Rorug01G0335900
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
45435726 .. 45438602
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0335900.1

Sequence Viewer

Length: 588 bp
ATGTCCGTAGTTCCGACGTATCCTACTCTCAGGTACCTGAGAACCAGGACCGCACGTGACCCGTCACGTGACTCCCCAACCTTTACTTCTTCGCTCAAAGTTTCAATCTTGGGATTCAGGGCGCCAAGTTCGCTGGTCATTTCCCGTAAATTCGATGAAATCCGGGGGCCGATGATAAGGGCTTTGAGCCCAGAAGGGTCGTTGCGAGAGCTCGATGATTCGCCGGTCTCCGTGGAGCTCGCGCCCATTTGCAGCGAGGCCCAGTTCGATCGGGTCGTCGCCGAGGCCCAACAGCTCCAGCAATCGTTCGTCGTCGTTTGGATGGCAAGCTGGTGCAGGAAGTGCATATATTTGAAACCAAAGTTGGAGAAGTTGGCAGCCGAGTACTATCCAAGATTGCTGTTCTACAGTGTTGATGTCAATTCAGTTCCACACAAGCTTGTTGCTCGCGCTGAAGTCACTAAAATGCCTACTATACAGCTCTGGAAAGATGGCAAGAAACAAGCTGAGGTAATCGGTGGTCATGGCAAAGCATATTTAGTGATTAATGAAGTTCGTGCAATGATTGAAACAGACGATAGCAAATAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

9.26

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 85 - 180 2.9e-16 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 2 cut(s) 33, 121
AccII CGCG 2 cut(s) 242, 450
AciI CCGC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 474
AcvI CACGTG 2 cut(s) 56, 68
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 35, 386
AgsI TTSAA 3 cut(s) 105, 355, 569
AjnI CCWGG 1 cut(s) 44
AjuI GAANNNNNNNTTGG 4 cut(s) 70, 102, 347, 379
AluBI AGCT 7 cut(s) 211, 238, 295, 330, 439, 481, 506
AluI AGCT 7 cut(s) 211, 238, 295, 330, 439, 481, 506
Alw21I GWGCWC 2 cut(s) 213, 240
Alw26I GTCTC 1 cut(s) 232
AoxI GGCC 3 cut(s) 167, 258, 285
ApeKI GCWGC 2 cut(s) 252, 377
ApoI RAATTY 1 cut(s) 149
AseI ATTAAT 1 cut(s) 546
Asp718I GGTACC 1 cut(s) 33
AspLEI GCGC 3 cut(s) 124, 244, 452
AspS9I GGNCC 4 cut(s) 48, 167, 259, 286
AsuC2I CCSGG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 48
BanI GGYRCC 2 cut(s) 33, 121
BanII GRGCYC 3 cut(s) 191, 213, 240
BbrPI CACGTG 2 cut(s) 56, 68
Bbv12I GWGCWC 2 cut(s) 213, 240
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 264, 389
BccI CCATC 2 cut(s) 316, 485
BciT130I CCWGG 1 cut(s) 46
BciVI GTATCC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 232
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 125
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 2 cut(s) 253, 378
BlsI GCNGC 2 cut(s) 254, 379
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 46, 164
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 4 cut(s) 48, 167, 259, 286
BmiI GGNNCC 3 cut(s) 35, 123, 168
BmrFI CCNGG 2 cut(s) 46, 164
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 164
BsaAI YACGTR 2 cut(s) 56, 68
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 163, 231, 282
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 163, 231, 282
BseGI GGATG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 29, 43, 498
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 264, 389
BsgI GTGCAG 1 cut(s) 355
Bsh1236I CGCG 2 cut(s) 242, 450
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 169, 260, 287
BshNI GGYRCC 2 cut(s) 33, 121
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 213, 240
BsiSI CCGG 2 cut(s) 163, 224
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 3 cut(s) 169, 260, 287
Bso31I GGTCTC 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 191, 213, 240
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 51
BspANI GGCC 3 cut(s) 169, 260, 287
BspCNI CTCAG 3 cut(s) 30, 42, 499
BspFNI CGCG 2 cut(s) 242, 450
BspLI GGNNCC 3 cut(s) 35, 123, 168
BspT107I GGYRCC 2 cut(s) 33, 121
BspTNI GGTCTC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 163, 231, 282
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 342
BstBAI YACGTR 2 cut(s) 56, 68
BstC8I GCNNGC 3 cut(s) 240, 328, 448
BstDEI CTNAG 3 cut(s) 29, 38, 507
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 2 cut(s) 242, 450
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 124, 244, 452
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 130, 342
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 44, 162
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 2 cut(s) 242, 450
BstV1I GCAGC 2 cut(s) 264, 389
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 3 cut(s) 169, 260, 287
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 3 cut(s) 240, 328, 448
CfoI GCGC 3 cut(s) 124, 244, 452
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 4 cut(s) 48, 167, 259, 286
Csp6I GTAC 2 cut(s) 34, 385
CviAII CATG 1 cut(s) 524
CviQI GTAC 2 cut(s) 34, 385
DdeI CTNAG 3 cut(s) 29, 38, 507
DinI GGCGCC 1 cut(s) 123
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Ecl136II GAGCTC 2 cut(s) 211, 238
Eco24I GRGCYC 3 cut(s) 191, 213, 240
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 48
Eco53kI GAGCTC 2 cut(s) 211, 238
Eco57I CTGAAG 1 cut(s) 474
Eco72I CACGTG 2 cut(s) 56, 68
EcoICRI GAGCTC 2 cut(s) 211, 238
EcoRII CCWGG 1 cut(s) 44
EcoT38I GRGCYC 3 cut(s) 191, 213, 240
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
FaeI CATG 1 cut(s) 527
FaiI YATR 5 cut(s) 347, 349, 476, 525, 535
FatI CATG 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 253, 378
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 3 cut(s) 191, 213, 240
Fsp4HI GCNGC 2 cut(s) 253, 378
GlaI GCGC 3 cut(s) 123, 243, 451
GluI GCNGC 2 cut(s) 253, 378
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 3 cut(s) 169, 260, 287
HapII CCGG 2 cut(s) 163, 224
HhaI GCGC 3 cut(s) 124, 244, 452
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 1 cut(s) 527
Hin6I GCGC 3 cut(s) 122, 242, 450
HinP1I GCGC 3 cut(s) 122, 242, 450
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 71, 114, 218
HpaII CCGG 2 cut(s) 163, 224
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 484
Hpy99I CGWCG 4 cut(s) 19, 281, 314, 317
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 3 cut(s) 17, 55, 67
HpyCH4V TGCA 4 cut(s) 252, 336, 345, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 342
HpyF3I CTNAG 3 cut(s) 29, 38, 507
HpySE526I ACGT 3 cut(s) 17, 55, 67
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 527
HspAI GCGC 3 cut(s) 122, 242, 450
KasI GGCGCC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 2 cut(s) 235, 300
Lsp1109I GCAGC 2 cut(s) 264, 389
MaeII ACGT 3 cut(s) 17, 55, 67
MaeIII GTNAC 4 cut(s) 56, 63, 68, 457
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 3 cut(s) 191, 213, 240
MluCI AATT 2 cut(s) 149, 421
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 38, 345
MnlI CCTC 3 cut(s) 250, 277, 502
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 464
MspI CCGG 2 cut(s) 163, 224
MspR9I CCNGG 2 cut(s) 46, 164
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 2 cut(s) 242, 450
MwoI GCNNNNNNNGC 2 cut(s) 130, 342
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 1 cut(s) 164
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 527
NlaIV GGNNCC 3 cut(s) 35, 123, 168
NmeAIII GCCGAG 2 cut(s) 307, 406
NmuCI GTSAC 4 cut(s) 56, 63, 68, 457
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 2 cut(s) 114, 218
PkrI GCNGC 2 cut(s) 254, 379
Ple19I CGATCG 1 cut(s) 271
PleI GAGTC 1 cut(s) 65
PluTI GGCGCC 1 cut(s) 125
PmaCI CACGTG 2 cut(s) 56, 68
PmlI CACGTG 2 cut(s) 56, 68
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 2 cut(s) 56, 68
PshBI ATTAAT 1 cut(s) 546
Psp124BI GAGCTC 2 cut(s) 213, 240
Psp6I CCWGG 1 cut(s) 44
PspCI CACGTG 2 cut(s) 56, 68
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 35, 123, 168
PspPI GGNCC 4 cut(s) 48, 167, 259, 286
PvuI CGATCG 1 cut(s) 271
RsaI GTAC 2 cut(s) 35, 386
RsaNI GTAC 2 cut(s) 34, 385
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 2 cut(s) 213, 240
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 253, 378
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 4 cut(s) 48, 167, 259, 286
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 46, 164
SduI GDGCHC 3 cut(s) 191, 213, 240
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 123
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 2 cut(s) 149, 421
SsiI CCGC 1 cut(s) 51
SspDI GGCGCC 1 cut(s) 121
SstI GAGCTC 2 cut(s) 213, 240
StyD4I CCNGG 2 cut(s) 44, 162
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 3 cut(s) 20, 58, 70
TaqI TCGA 3 cut(s) 153, 213, 267
TasI AATT 2 cut(s) 149, 421
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 2 cut(s) 114, 218
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 4 cut(s) 56, 63, 68, 457
TseI GCWGC 2 cut(s) 252, 377
Tsp45I GTSAC 4 cut(s) 56, 63, 68, 457
TspDTI ATGAA 2 cut(s) 171, 564
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 48
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.