Rh1BG303500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
44001991 .. 44005153
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG303500.1

Sequence Viewer

Length: 1020 bp
ATGGGTGGGGGAATTCGCACAAGCGTGAAGGGGTGCCTCCTTTCGCAGCGGATCACTACGGCTTCAGATACAGTGCATGCAAACGAGAGCATCAATAGAAATTTCACTGCGCCCCAAGCTGCTGATTCAGAACAAGAGACGAGCACGGACTTGGATTCATCTAACTCATATTGGCTTAGTAGGTTTAGTGGTAGCATTCCTTGCTGGCCGATATTGGGCTCTGCTTCAAAGAGCAGGGTTTCAAACGGAACTAGAATCAGAGCTGAGAGTCTGCGTCACAGAGTGCCTTCATCTCCTCGAACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGGAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTACTGTCTTTAAGGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTAAAGGAATGGCTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGGTCGGGAGGAATGGTTTGGAGTTCTCACTTTCAACCACTTTCATGGACTTGCTGCGAAGGCTCTAGCATTTCTTCACAATGAAGCAAAAGTTATATACCGTGACTTTAAAACATCTAATATCCTGTTGGATTCAACCTACAATGTCAAGCTCTCTGATTTTGGTTTGGCCGTGGATGGGCGATCAATTGACAGACACCGAGGTGCCAAAACAAGGGTCATGGGCACATATGGATATGCAGCTCCCGAGTATATAGAAACAAGGGTCATGGGCACATATGGATATGCAGCTCCTGAGTATGTAGCTACAGGCCAGTTCTCCGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCTTTTCTTTGCCTATCAACAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAACATTGGAGAAGCTTCAGGAATCTAGTGACATGGAGGGCTTGGGGATCTCTCAAAATAAACGACGCCAAAATCCACATGTCAGTTCAATCAATGGTCCCAAATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

339

Amino Acids

37.34

Weight (kDa)

9.55

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 186 - 257 6.1e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 187 - 258 4e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 33, 707
AciI CCGC 2 cut(s) 49, 351
AclWI GGATC 3 cut(s) 59, 872, 968
AcoI YGGCCR 3 cut(s) 206, 672, 828
AcsI RAATTY 3 cut(s) 12, 100, 430
AcuI CTGAAG 2 cut(s) 48, 914
AcyI GRCGYC 1 cut(s) 979
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 6 cut(s) 215, 357, 458, 681, 717, 888
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 5 cut(s) 228, 243, 538, 639, 1002
AjnI CCWGG 2 cut(s) 356, 451
AleI CACNNNNGTG 2 cut(s) 23, 705
Alw21I GWGCWC 2 cut(s) 146, 838
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 3 cut(s) 59, 872, 968
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 6 cut(s) 206, 368, 672, 814, 828, 890
ApeKI GCWGC 7 cut(s) 46, 119, 440, 443, 557, 743, 791
ApoI RAATTY 3 cut(s) 12, 100, 430
ArsI GACNNNNNNTTYG 2 cut(s) 705, 737
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 1010
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 1 cut(s) 1010
BaeGI GKGCMC 2 cut(s) 731, 779
BalI TGGCCA 1 cut(s) 830
BanI GGYRCC 2 cut(s) 33, 707
BanII GRGCYC 2 cut(s) 221, 838
Bbv12I GWGCWC 2 cut(s) 146, 838
BbvI GCAGC 7 cut(s) 58, 106, 430, 452, 544, 755, 803
BccI CCATC 1 cut(s) 674
BceAI ACGGC 2 cut(s) 75, 659
BciT130I CCWGG 2 cut(s) 358, 453
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 252, 569, 939
BfmI CTRYAG 1 cut(s) 810
BglII AGATCT 1 cut(s) 312
BisI GCNGC 7 cut(s) 47, 120, 441, 444, 558, 744, 792
BlsI GCNGC 7 cut(s) 48, 121, 442, 445, 559, 745, 793
Bme1390I CCNGG 2 cut(s) 358, 453
Bme18I GGWCC 1 cut(s) 1010
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 1010
BmiI GGNNCC 3 cut(s) 35, 709, 1012
BmrFI CCNGG 2 cut(s) 358, 453
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 887
BsaHI GRCGYC 1 cut(s) 979
BsaJI CCNNGG 3 cut(s) 675, 703, 825
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 357, 458, 681, 717, 888
Bse1I ACTGG 1 cut(s) 817
BseBI CCWGG 2 cut(s) 358, 453
BseDI CCNNGG 3 cut(s) 675, 703, 825
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 6 cut(s) 215, 357, 458, 681, 717, 888
BseMII CTCAG 2 cut(s) 255, 789
BseNI ACTGG 1 cut(s) 817
BseRI GAGGAG 1 cut(s) 285
BseSI GKGCMC 2 cut(s) 731, 779
BseXI GCAGC 7 cut(s) 58, 106, 430, 452, 544, 755, 803
BshFI GGCC 6 cut(s) 208, 370, 674, 816, 830, 892
BshNI GGYRCC 2 cut(s) 33, 707
BsiHKAI GWGCWC 2 cut(s) 146, 838
BsiHKCI CYCGRG 1 cut(s) 749
BslFI GGGAC 1 cut(s) 996
BslI CCNNNNNNNGG 6 cut(s) 215, 357, 458, 681, 717, 888
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 996
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 6 cut(s) 208, 370, 674, 816, 830, 892
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 5 cut(s) 146, 221, 731, 779, 838
Bsp143I GATC 6 cut(s) 51, 312, 424, 686, 877, 960
BspACI CCGC 2 cut(s) 49, 351
BspANI GGCC 6 cut(s) 208, 370, 674, 816, 830, 892
BspCNI CTCAG 2 cut(s) 256, 790
BspLI GGNNCC 3 cut(s) 35, 709, 1012
BspPI GGATC 3 cut(s) 59, 872, 968
BspT107I GGYRCC 2 cut(s) 33, 707
BsrI ACTGG 1 cut(s) 817
BssECI CCNNGG 3 cut(s) 675, 703, 825
BssMI GATC 6 cut(s) 51, 312, 424, 686, 877, 960
BssNI GRCGYC 1 cut(s) 979
Bst2UI CCWGG 2 cut(s) 358, 453
Bst4CI ACNGT 3 cut(s) 73, 406, 605
BstACI GRCGYC 1 cut(s) 979
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 78, 206
BstDEI CTNAG 4 cut(s) 176, 264, 798, 887
BstDSI CCRYGG 2 cut(s) 675, 825
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 685
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 54, 315, 427, 689, 880, 963
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 6 cut(s) 51, 312, 424, 686, 877, 960
BstMWI GCNNNNNNNGC 4 cut(s) 116, 201, 563, 842
BstNI CCWGG 2 cut(s) 358, 453
BstNSI RCATGY 2 cut(s) 80, 995
BstSCI CCNGG 2 cut(s) 356, 451
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 2 cut(s) 731, 779
BstV1I GCAGC 7 cut(s) 58, 106, 430, 452, 544, 755, 803
BstX2I RGATCY 3 cut(s) 312, 877, 960
BstXI CCANNNNNNTGG 1 cut(s) 548
BstYI RGATCY 3 cut(s) 312, 877, 960
BsuRI GGCC 6 cut(s) 208, 370, 674, 816, 830, 892
BtgI CCRYGG 2 cut(s) 675, 825
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 78, 105
Cac8I GCNNGC 2 cut(s) 78, 206
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 1010
CseI GACGC 2 cut(s) 263, 987
Csp6I GTAC 1 cut(s) 402
CviAII CATG 7 cut(s) 77, 548, 724, 772, 898, 946, 992
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 4 cut(s) 176, 264, 798, 887
DpnI GATC 6 cut(s) 53, 314, 426, 688, 879, 962
DpnII GATC 6 cut(s) 51, 312, 424, 686, 877, 960
DraI TTTAAA 1 cut(s) 613
DraIII CACNNNGTG 1 cut(s) 283
EaeI YGGCCR 3 cut(s) 206, 672, 828
Ecl136II GAGCTC 1 cut(s) 836
Eco24I GRGCYC 2 cut(s) 221, 838
Eco47I GGWCC 1 cut(s) 1010
Eco53kI GAGCTC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 48, 914
Eco88I CYCGRG 1 cut(s) 749
EcoICRI GAGCTC 1 cut(s) 836
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRI GAATTC 2 cut(s) 12, 430
EcoRII CCWGG 2 cut(s) 356, 451
EcoT38I GRGCYC 2 cut(s) 221, 838
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 7 cut(s) 80, 551, 727, 775, 901, 949, 995
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 996
FatI CATG 7 cut(s) 76, 547, 723, 771, 897, 945, 991
FauNDI CATATG 2 cut(s) 733, 781
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 7 cut(s) 47, 120, 441, 444, 558, 744, 792
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 2 cut(s) 221, 838
Fsp4HI GCNGC 7 cut(s) 47, 120, 441, 444, 558, 744, 792
FspBI CTAG 3 cut(s) 252, 569, 939
GlaI GCGC 1 cut(s) 111
GluI GCNGC 7 cut(s) 47, 120, 441, 444, 558, 744, 792
HaeIII GGCC 6 cut(s) 208, 370, 674, 816, 830, 892
HgaI GACGC 2 cut(s) 263, 987
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 979
Hin1II CATG 7 cut(s) 80, 551, 727, 775, 901, 949, 995
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HindIII AAGCTT 2 cut(s) 884, 926
HinfI GANTC 6 cut(s) 125, 155, 255, 268, 635, 935
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 5 cut(s) 67, 130, 260, 429, 661
Hpy188III TCNNGA 4 cut(s) 509, 749, 797, 932
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 1 cut(s) 981
HpyAV CCTTC 3 cut(s) 22, 297, 556
HpyCH4III ACNGT 3 cut(s) 73, 406, 605
HpyCH4V TGCA 4 cut(s) 76, 80, 743, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 201, 563, 842
HpyF3I CTNAG 4 cut(s) 176, 264, 798, 887
Hsp92I GRCGYC 1 cut(s) 979
Hsp92II CATG 7 cut(s) 80, 551, 727, 775, 901, 949, 995
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 6 cut(s) 51, 312, 424, 686, 877, 960
LmnI GCTCC 2 cut(s) 751, 799
Lsp1109I GCAGC 7 cut(s) 58, 106, 430, 452, 544, 755, 803
LweI GCATC 1 cut(s) 99
MaeI CTAG 3 cut(s) 252, 569, 939
MaeIII GTNAC 3 cut(s) 275, 605, 941
MalI GATC 6 cut(s) 53, 314, 426, 688, 879, 962
MboI GATC 6 cut(s) 51, 312, 424, 686, 877, 960
MboII GAAGA 1 cut(s) 569
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 3 cut(s) 312, 877, 960
MhlI GDGCHC 5 cut(s) 146, 221, 731, 779, 838
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 4 cut(s) 12, 100, 430, 690
MluNI TGGCCA 1 cut(s) 830
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 8 cut(s) 47, 298, 306, 382, 474, 505, 698, 943
Mox20I TGGCCA 1 cut(s) 830
MscI TGGCCA 1 cut(s) 830
MseI TTAA 5 cut(s) 336, 411, 486, 612, 840
MslI CAYNNNNRTG 3 cut(s) 23, 546, 705
Msp20I TGGCCA 1 cut(s) 830
MspA1I CMGCKG 2 cut(s) 49, 443
MspR9I CCNGG 2 cut(s) 358, 453
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 2 cut(s) 358, 453
MwoI GCNNNNNNNGC 4 cut(s) 116, 201, 563, 842
NdeI CATATG 2 cut(s) 733, 781
NdeII GATC 6 cut(s) 51, 312, 424, 686, 877, 960
NlaIII CATG 7 cut(s) 80, 551, 727, 775, 901, 949, 995
NlaIV GGNNCC 3 cut(s) 35, 709, 1012
NmuCI GTSAC 3 cut(s) 275, 605, 941
NspI RCATGY 2 cut(s) 80, 995
OliI CACNNNNGTG 2 cut(s) 23, 705
PaeI GCATGC 1 cut(s) 80
PciI ACATGT 1 cut(s) 991
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 5 cut(s) 125, 155, 255, 635, 935
PkrI GCNGC 7 cut(s) 48, 121, 442, 445, 559, 745, 793
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 991
Psp124BI GAGCTC 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 356, 451
PspGI CCWGG 2 cut(s) 356, 451
PspN4I GGNNCC 3 cut(s) 35, 709, 1012
PspPI GGNCC 1 cut(s) 1010
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 3 cut(s) 312, 877, 960
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 3 cut(s) 23, 546, 705
SacI GAGCTC 1 cut(s) 838
SaqAI TTAA 5 cut(s) 336, 411, 486, 612, 840
SatI GCNGC 7 cut(s) 47, 120, 441, 444, 558, 744, 792
Sau3AI GATC 6 cut(s) 51, 312, 424, 686, 877, 960
Sau96I GGNCC 1 cut(s) 1010
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 358, 453
SduI GDGCHC 5 cut(s) 146, 221, 731, 779, 838
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 1 cut(s) 1010
SmiMI CAYNNNNRTG 3 cut(s) 23, 546, 705
SphI GCATGC 1 cut(s) 80
Sse9I AATT 4 cut(s) 12, 100, 430, 690
SsiI CCGC 2 cut(s) 49, 351
SspMI CTAG 3 cut(s) 252, 569, 939
SstI GAGCTC 1 cut(s) 838
StyD4I CCNGG 2 cut(s) 356, 451
TaaI ACNGT 3 cut(s) 73, 406, 605
TaqI TCGA 1 cut(s) 298
TasI AATT 4 cut(s) 12, 100, 430, 690
TfiI GAWTC 5 cut(s) 125, 155, 255, 635, 935
Tru1I TTAA 5 cut(s) 336, 411, 486, 612, 840
Tru9I TTAA 5 cut(s) 336, 411, 486, 612, 840
TscAI CASTG 2 cut(s) 78, 112
TseFI GTSAC 3 cut(s) 275, 605, 941
TseI GCWGC 7 cut(s) 46, 119, 440, 443, 557, 743, 791
Tsp45I GTSAC 3 cut(s) 275, 605, 941
TspDTI ATGAA 7 cut(s) 147, 279, 354, 423, 536, 600, 914
TspGWI ACGGA 3 cut(s) 161, 261, 814
TspRI CASTG 2 cut(s) 78, 112
VpaK11BI GGWCC 1 cut(s) 1010
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 3 cut(s) 12, 100, 430
XceI RCATGY 2 cut(s) 80, 995
XspI CTAG 3 cut(s) 252, 569, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.