RchiOBHm_Chr1g0367401
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000305
Physical Location & Seq
Forward (+)
57703018 .. 57705359
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59186

Sequence Viewer

Length: 855 bp
ATGTCATCTGTCTCAGTGTCTTCAACTCCTCGAACAGAGGGTGAAATCTTGATGTCTTCCAACCTGATGAACTTCTTCTTTATTGAACTGAAAACAGCCACAAGGAACTTTCGTCCTGACAGTATGATGGGTGAAGGCGGATTTGGTTGTGTTTTTAAGGGGTGGGTTGATGAGAATGCATTAACAGCTGCCAAGCATGGTACTGGAATGGTTATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTCCAGGGTCACAAGGAATGGTTGTGGCATAATCAAAAATTGGAGAATGTCTTAGACATTGGTTTTCAATTGATTGGAGTTGAAGGGCAATACAGAAATCAACTATCTTGGACAGCTCCGACACTCAAATCTTGTGAAGCTGATTGGTTATTGCTTGGATGCTTGGAGGATGACCACCGGCTTCTGGTGTATGAATTCATGTCTCGTGGCAGCTTGGACAATCATCTATTTAGAAGGGCTTCTTACTTTCAACCACTGTCGTGGTCCCTTCATATGAAGATTGCTCTTGGTACTGCTGAGGGTCTAGCATTTCTTCACAGTGATGAGGCAAAAGTGATCTATCAGGACTTTAAAACTTTTAATATCCTGTTGGATTCAGCCTGCAATGCCAAACTCTCTGATTTTGGTTTAGCCAAGGATGGACCAGCAGGTGATAAAAGCCACGTCTCAACAAGGGTCATGGGGACATATAGGTATGCGGCTCCTGAGTATATGGCCACTGGTCATTTAACCGCCAAAAGTGATGTATATAGTTTTGGGGTGTTATGCTCGAAATGTTGTCTGGAAGACAAGCTGTGGACAAGAACCGGCCTACAGGAGAACACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

31.78

Weight (kDa)

6.14

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 275 8e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 134 - 264 2.4e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 662
Acc36I ACCTGC 1 cut(s) 662
AciI CCGC 3 cut(s) 138, 722, 756
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 2 cut(s) 202, 535
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 5 cut(s) 24, 86, 311, 326, 494
AjiI CACGTC 1 cut(s) 688
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AleI CACNNNNGTG 1 cut(s) 502
AluBI AGCT 6 cut(s) 188, 359, 383, 456, 817, 851
AluI AGCT 6 cut(s) 188, 359, 383, 456, 817, 851
Alw26I GTCTC 4 cut(s) 16, 248, 450, 694
AoxI GGCC 2 cut(s) 738, 832
ApeKI GCWGC 2 cut(s) 188, 453
ApoI RAATTY 1 cut(s) 437
Asp700I GAANNNNTTC 2 cut(s) 74, 481
AspS9I GGNCC 2 cut(s) 507, 665
AsuHPI GGTGA 3 cut(s) 53, 143, 686
AvaII GGWCC 2 cut(s) 507, 665
BalI TGGCCA 1 cut(s) 740
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 3 cut(s) 12, 48, 816
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 175, 465
BccI CCATC 2 cut(s) 121, 656
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 4 cut(s) 16, 248, 450, 694
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 662
BisI GCNGC 3 cut(s) 189, 454, 723
BlsI GCNGC 3 cut(s) 190, 455, 724
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 2 cut(s) 507, 665
BmgBI CACGTC 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 507, 665
BmiI GGNNCC 2 cut(s) 509, 726
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 3 cut(s) 12, 48, 816
BpmI CTGGAG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 247, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 2 cut(s) 420, 830
Bse1I ACTGG 2 cut(s) 208, 748
Bse3DI GCAATG 1 cut(s) 634
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 247, 657
BseGI GGATG 3 cut(s) 407, 418, 667
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 3 cut(s) 27, 531, 720
BseNI ACTGG 2 cut(s) 208, 748
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 175, 465
BshFI GGCC 2 cut(s) 740, 834
BsiSI CCGG 2 cut(s) 421, 831
BslFI GGGAC 2 cut(s) 493, 721
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 4 cut(s) 16, 248, 450, 694
BsmBI CGTCTC 1 cut(s) 694
BsmFI GGGAC 2 cut(s) 493, 721
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 2 cut(s) 740, 834
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 579
BspACI CCGC 3 cut(s) 138, 722, 756
BspANI GGCC 2 cut(s) 740, 834
BspCNI CTCAG 3 cut(s) 26, 532, 721
BspLI GGNNCC 2 cut(s) 509, 726
BspMI ACCTGC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 634
BsrFI RCCGGY 2 cut(s) 420, 830
BsrI ACTGG 2 cut(s) 208, 748
BssAI RCCGGY 2 cut(s) 420, 830
BssECI CCNNGG 2 cut(s) 247, 657
BssMI GATC 1 cut(s) 579
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 122, 501, 563
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 5 cut(s) 13, 295, 540, 729, 852
BstF5I GGATG 3 cut(s) 407, 418, 667
BstKTI GATC 1 cut(s) 582
BstMAI GTCTC 4 cut(s) 16, 248, 450, 694
BstMBI GATC 1 cut(s) 579
BstMWI GCNNNNNNNGC 2 cut(s) 185, 629
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 175, 465
BstV2I GAAGAC 3 cut(s) 12, 48, 816
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 2 cut(s) 740, 834
BtrI CACGTC 1 cut(s) 688
BtsCI GGATG 3 cut(s) 407, 418, 667
BtsIMutI CAGTG 4 cut(s) 21, 497, 568, 741
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 1 cut(s) 625
Cfr10I RCCGGY 2 cut(s) 420, 830
Cfr13I GGNCC 2 cut(s) 507, 665
Csp6I GTAC 2 cut(s) 201, 534
CviAII CATG 3 cut(s) 197, 442, 703
CviQI GTAC 2 cut(s) 201, 534
DdeI CTNAG 5 cut(s) 13, 295, 540, 729, 852
DpnI GATC 1 cut(s) 581
DpnII GATC 1 cut(s) 579
DraI TTTAAA 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 507, 665
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 657
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 694
FaeI CATG 3 cut(s) 200, 445, 706
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FaqI GGGAC 2 cut(s) 493, 721
FatI CATG 3 cut(s) 196, 441, 702
FauNDI CATATG 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 189, 454, 723
FokI GGATG 3 cut(s) 414, 425, 674
Fsp4HI GCNGC 3 cut(s) 189, 454, 723
FspBI CTAG 1 cut(s) 548
GluI GCNGC 3 cut(s) 189, 454, 723
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 2 cut(s) 740, 834
HapII CCGG 2 cut(s) 421, 831
Hin1II CATG 3 cut(s) 200, 445, 706
HinfI GANTC 1 cut(s) 617
HpaII CCGG 2 cut(s) 421, 831
HphI GGTGA 3 cut(s) 53, 143, 686
Hpy166II GTNNAC 1 cut(s) 822
Hpy188I TCNGA 2 cut(s) 363, 643
Hpy188III TCNNGA 5 cut(s) 49, 116, 587, 728, 806
Hpy8I GTNNAC 1 cut(s) 822
HpyAV CCTTC 5 cut(s) 128, 233, 320, 471, 521
HpyCH4III ACNGT 3 cut(s) 122, 501, 563
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 2 cut(s) 179, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 629
HpyF3I CTNAG 5 cut(s) 13, 295, 540, 729, 852
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 3 cut(s) 200, 445, 706
Kzo9I GATC 1 cut(s) 579
LmnI GCTCC 2 cut(s) 364, 730
Lsp1109I GCAGC 2 cut(s) 175, 465
LweI GCATC 1 cut(s) 392
MaeI CTAG 1 cut(s) 548
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 581
MboI GATC 1 cut(s) 579
MboII GAAGA 7 cut(s) 12, 48, 67, 235, 532, 548, 821
MfeI CAATTG 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 3 cut(s) 281, 311, 437
MluNI TGGCCA 1 cut(s) 740
MmeI TCCRAC 3 cut(s) 84, 386, 594
MnlI CCTC 6 cut(s) 31, 39, 219, 403, 535, 562
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 181
MroXI GAANNNNTTC 2 cut(s) 74, 481
MscI TGGCCA 1 cut(s) 740
MseI TTAA 6 cut(s) 156, 182, 231, 594, 603, 752
MslI CAYNNNNRTG 2 cut(s) 502, 564
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 421, 831
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 185, 629
NdeI CATATG 1 cut(s) 516
NdeII GATC 1 cut(s) 579
NlaIII CATG 3 cut(s) 200, 445, 706
NlaIV GGNNCC 2 cut(s) 509, 726
NmuCI GTSAC 1 cut(s) 251
NsiI ATGCAT 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 502
PaqCI CACCTGC 1 cut(s) 662
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 2 cut(s) 74, 481
PfeI GAWTC 1 cut(s) 617
PkrI GCNGC 3 cut(s) 190, 455, 724
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 509, 726
PspPI GGNCC 2 cut(s) 507, 665
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 202, 535
RsaNI GTAC 2 cut(s) 201, 534
RseI CAYNNNNRTG 2 cut(s) 502, 564
SaqAI TTAA 6 cut(s) 156, 182, 231, 594, 603, 752
SatI GCNGC 3 cut(s) 189, 454, 723
Sau3AI GATC 1 cut(s) 579
Sau96I GGNCC 2 cut(s) 507, 665
ScrFI CCNGG 1 cut(s) 248
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 836
SinI GGWCC 2 cut(s) 507, 665
SmiMI CAYNNNNRTG 2 cut(s) 502, 564
Sse9I AATT 3 cut(s) 281, 311, 437
SsiI CCGC 3 cut(s) 138, 722, 756
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 122, 501, 563
TaiI ACGT 1 cut(s) 690
TaqI TCGA 2 cut(s) 31, 794
TasI AATT 3 cut(s) 281, 311, 437
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 6 cut(s) 156, 182, 231, 594, 603, 752
Tru9I TTAA 6 cut(s) 156, 182, 231, 594, 603, 752
TscAI CASTG 4 cut(s) 21, 504, 568, 748
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 2 cut(s) 188, 453
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 83, 430, 450, 503, 533
TspRI CASTG 4 cut(s) 21, 504, 568, 748
VpaK11BI GGWCC 2 cut(s) 507, 665
XapI RAATTY 1 cut(s) 437
XmnI GAANNNNTTC 2 cut(s) 74, 481
XspI CTAG 1 cut(s) 548
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.