Rh1BG303100
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
43960951 .. 43961334
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG303100.1

Sequence Viewer

Length: 384 bp
ATGCTCGAAATGATTTCCGGAAAACGAGTTTTTGACCGGAACCGGACACCCGGGGAACAGAACTTAGTTGAATGGGCCAAACCTTACCTTTTCAGCAAACACAGAGTCCTCCAAATTTTTGATCATCATATCAAAGGCCAGTTTTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAATATTGGAGAAGCTTCAGGAATCCAGTGATATGGATGGCTTGGGGATCTCTCAAAATAAACGACGCCAAATCCGCATGTCAGTTCAATCAATGGTCCCAAATACTGCAGGAGAAGTAGCATTGGAACCAGCAATTCAACATCCTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.51

Weight (kDa)

9.84

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 1 cut(s) 310
AclWI GGATC 2 cut(s) 194, 290
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 3 cut(s) 71, 323, 374
AluBI AGCT 3 cut(s) 158, 208, 250
AluI AGCT 3 cut(s) 158, 208, 250
Alw21I GWGCWC 1 cut(s) 160
AlwI GGATC 2 cut(s) 194, 290
Ama87I CYCGRG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 4 cut(s) 75, 136, 150, 212
ApoI RAATTY 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspS9I GGNCC 2 cut(s) 75, 331
AsuC2I CCSGG 2 cut(s) 51, 52
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BccI CCATC 1 cut(s) 266
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 51, 52
BfmI CTRYAG 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 51, 52
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 75, 331
BmiI GGNNCC 3 cut(s) 41, 333, 363
BmrFI CCNGG 2 cut(s) 51, 52
Bpu10I CCTNAGC 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 51, 52
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 50, 51
BsaWI WCCGGW 3 cut(s) 17, 36, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 139, 261
BseAI TCCGGA 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 50, 51
BseGI GGATG 2 cut(s) 277, 376
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 139, 261
BshFI GGCC 4 cut(s) 77, 138, 152, 214
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 18, 37, 43, 51
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 4 cut(s) 77, 138, 152, 214
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 121, 199, 282
BspACI CCGC 1 cut(s) 310
BspANI GGCC 4 cut(s) 77, 138, 152, 214
BspEI TCCGGA 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 41, 333, 363
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 2 cut(s) 194, 290
BsrI ACTGG 2 cut(s) 139, 261
BssECI CCNNGG 2 cut(s) 50, 51
BssMI GATC 3 cut(s) 121, 199, 282
BssNI GRCGYC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 64, 209
BstF5I GGATG 2 cut(s) 277, 376
BstKTI GATC 3 cut(s) 124, 202, 285
BstMBI GATC 3 cut(s) 121, 199, 282
BstMWI GCNNNNNNNGC 2 cut(s) 164, 309
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 49, 50
BstSFI CTRYAG 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 199, 282
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 2 cut(s) 199, 282
BsuRI GGCC 4 cut(s) 77, 138, 152, 214
BtsCI GGATG 2 cut(s) 277, 376
BtsIMutI CAGTG 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 75, 331
Cfr9I CCCGGG 1 cut(s) 50
CseI GACGC 1 cut(s) 309
CviAII CATG 2 cut(s) 220, 313
CviJI RGCY 8 cut(s) 77, 138, 152, 158, 208, 214, 250, 276
CviKI_1 RGCY 8 cut(s) 77, 138, 152, 158, 208, 214, 250, 276
DdeI CTNAG 2 cut(s) 64, 209
DpnI GATC 3 cut(s) 123, 201, 284
DpnII GATC 3 cut(s) 121, 199, 282
EaeI YGGCCR 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 223, 316
FaiI YATR 4 cut(s) 129, 221, 269, 314
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 219, 312
FbaI TGATCA 1 cut(s) 121
FokI GGATG 2 cut(s) 284, 363
FriOI GRGCYC 1 cut(s) 160
HaeIII GGCC 4 cut(s) 77, 138, 152, 214
HapII CCGG 4 cut(s) 18, 37, 43, 51
HgaI GACGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 2 cut(s) 223, 316
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 206, 248
HinfI GANTC 2 cut(s) 105, 257
HpaII CCGG 4 cut(s) 18, 37, 43, 51
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 18, 195, 254
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 179, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 309
HpyF3I CTNAG 2 cut(s) 64, 209
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 2 cut(s) 223, 316
Kpn2I TCCGGA 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 199, 282
MalI GATC 3 cut(s) 123, 201, 284
MboI GATC 3 cut(s) 121, 199, 282
MflI RGATCY 2 cut(s) 199, 282
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 114, 369
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 152
MroI TCCGGA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 4 cut(s) 18, 37, 43, 51
MspR9I CCNGG 2 cut(s) 51, 52
MwoI GCNNNNNNNGC 2 cut(s) 164, 309
NciI CCSGG 2 cut(s) 51, 52
NdeII GATC 3 cut(s) 121, 199, 282
NlaIII CATG 2 cut(s) 223, 316
NlaIV GGNNCC 3 cut(s) 41, 333, 363
NspI RCATGY 1 cut(s) 316
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 41, 333, 363
PspPI GGNCC 2 cut(s) 75, 331
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 199, 282
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 3 cut(s) 121, 199, 282
Sau96I GGNCC 2 cut(s) 75, 331
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 51, 52
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 85, 90, 160, 177, 210, 252
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 331
SmaI CCCGGG 1 cut(s) 52
Sse9I AATT 2 cut(s) 114, 369
SsiI CCGC 1 cut(s) 310
SspI AATATT 1 cut(s) 240
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 49, 50
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 114, 369
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 236
TspMI CCCGGG 1 cut(s) 50
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 114
XceI RCATGY 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.