Rw1G030520

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000305
Physical Location & Seq
Forward (+)
58450967 .. 58453583
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030520.1

Sequence Viewer

Length: 1212 bp
ATGAGTGGTGGGATTCGAACAAGCGTGAAGGGGTACCTTATTGCGAAACGTCTCAGTCTGACTGGGGAGATAGATACAGTGCATGAGATGAATGAGATCATCAACACAAATTTCACTGCACTCCAAGCTCACAATGTGCCTTCAACTCCTCAGACAGAGGGTGAAATCTTGTTGAAAAGATTTCTCTTCAATGAACTGAAAATAGCAACCTGGAACTTTCATCCTGATAATATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGTAATTCATCAACAGCTGCCAAGGCTGGTAGTGGCATGTTAATTGCTGTGAAGATGATTGACCAAGAAGGTTTCCAGGGTCAAGAGGAATGGTTGACAGAAATTTACTATCTAGGAAGGTTGCGACATCCAAATCTTGTGAAGTTGTTGGGTTATTGCTTTGAGGACAACCACCGGCTCCTGGTTTATGAATTTATGCCTCATGGAAGCTTGGAGATTCATCTATATGGAAGGGATTCTTACCTTGAACCACTTTCATGGACCCTGCGTATGAAGATTGCCCTTGGTATTGCCAAGGTTCTTGCATTTCTTCATGGTACTGAGGGAAAAGTGATCCATCGGGACGTTAAAACTTCTAATATTCTGCTCGATTCAACCTACAATGCCAAACTCTCTGATTTTGGTTTGGCAAAGGATGTACCAGCTGGTGATGAAAGCCATGTCTTAACAAGGGTGGTGGGGACACATGGGTATGGAGCTCCTGAGTATATTTCTACAGGTCATTTATCCTGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTGGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTACCTTGCCAGCAAAAGCAGAGCTCTCAAATTTTTTGATGCTCGTATTGAAGGCCAGTACTCTGTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTTGGGAATCTCACAAAATGAGCCTCGCCAAACTCCTTGTGCCAATTTAAGCAATCGCAGGAGAAGTACAAGCTGGATCAGCTTCAGGCCATGTGCTTCCCGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

403

Amino Acids

44.94

Weight (kDa)

7.22

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 76 - 352 7.4e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 77 - 355 6.8e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 1 cut(s) 1198
AclWI GGATC 2 cut(s) 607, 1181
AcsI RAATTY 4 cut(s) 109, 381, 470, 935
AcuI CTGAAG 2 cut(s) 1058, 1165
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 5 cut(s) 35, 598, 699, 965, 1165
AfiI CCNNNNNNNGG 2 cut(s) 460, 1032
AgsI TTSAA 8 cut(s) 144, 175, 190, 527, 654, 830, 893, 956
AjnI CCWGG 4 cut(s) 209, 354, 459, 872
AloI GAACNNNNNNTCC 2 cut(s) 834, 866
Alw21I GWGCWC 3 cut(s) 760, 931, 982
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 2 cut(s) 607, 1181
Ama87I CYCGRG 1 cut(s) 1025
AoxI GGCC 4 cut(s) 897, 958, 1034, 1184
ApeKI GCWGC 4 cut(s) 296, 989, 1069, 1200
ApoI RAATTY 4 cut(s) 109, 381, 470, 935
Asp700I GAANNNNTTC 1 cut(s) 514
Asp718I GGTACC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 540, 897
AsuHPI GGTGA 3 cut(s) 173, 719, 1097
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 540
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 3 cut(s) 760, 931, 982
BbsI GAAGAC 1 cut(s) 850
Bbv12I GWGCWC 3 cut(s) 760, 931, 982
BbvI GCAGC 3 cut(s) 283, 1001, 1081
BccI CCATC 2 cut(s) 272, 624
BciT130I CCWGG 4 cut(s) 211, 356, 461, 874
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 774
BisI GCNGC 4 cut(s) 297, 990, 1070, 1201
BlsI GCNGC 4 cut(s) 298, 991, 1071, 1202
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 4 cut(s) 211, 356, 461, 874
Bme18I GGWCC 1 cut(s) 540
BmeT110I CYCGRG 1 cut(s) 1025
BmgT120I GGNCC 2 cut(s) 540, 897
BmiI GGNNCC 3 cut(s) 35, 458, 542
BmrFI CCNGG 4 cut(s) 211, 356, 461, 874
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 934, 998
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 850
Bpu14I TTCGAA 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 1006
BsaBI GATNNNNATC 1 cut(s) 1012
BsaJI CCNNGG 6 cut(s) 300, 355, 562, 573, 872, 873
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 1032
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 67, 961
Bse8I GATNNNNATC 1 cut(s) 1012
BseBI CCWGG 4 cut(s) 211, 356, 461, 874
BseCI ATCGAT 1 cut(s) 1006
BseDI CCNNGG 6 cut(s) 300, 355, 562, 573, 872, 873
BseGI GGATG 3 cut(s) 220, 406, 700
BseJI GATNNNNATC 1 cut(s) 1012
BseLI CCNNNNNNNGG 2 cut(s) 460, 1032
BseMII CTCAG 4 cut(s) 67, 164, 591, 753
BseNI ACTGG 2 cut(s) 67, 961
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 3 cut(s) 283, 1001, 1081
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 4 cut(s) 899, 960, 1036, 1186
BshNI GGYRCC 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 1006
BsiHKAI GWGCWC 3 cut(s) 760, 931, 982
BsiHKCI CYCGRG 1 cut(s) 1025
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 2 cut(s) 635, 754
BslI CCNNNNNNNGG 2 cut(s) 460, 1032
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 635, 754
BsnI GGCC 4 cut(s) 899, 960, 1036, 1186
BsoBI CYCGRG 1 cut(s) 1025
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 3 cut(s) 760, 931, 982
Bsp143I GATC 3 cut(s) 96, 612, 1173
BspACI CCGC 1 cut(s) 1198
BspANI GGCC 4 cut(s) 899, 960, 1036, 1186
BspCNI CTCAG 4 cut(s) 66, 163, 592, 754
BspDI ATCGAT 1 cut(s) 1006
BspLI GGNNCC 3 cut(s) 35, 458, 542
BspPI GGATC 2 cut(s) 607, 1181
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 453
BsrI ACTGG 2 cut(s) 67, 961
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 6 cut(s) 300, 355, 562, 573, 872, 873
BssMI GATC 3 cut(s) 96, 612, 1173
BssT1I CCWWGG 3 cut(s) 300, 562, 573
Bst2UI CCWGG 4 cut(s) 211, 356, 461, 874
Bst4CI ACNGT 2 cut(s) 79, 866
Bst6I CTCTTC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 916
BstDEI CTNAG 4 cut(s) 53, 150, 600, 762
BstF5I GGATG 3 cut(s) 220, 406, 700
BstKTI GATC 3 cut(s) 99, 615, 1176
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 96, 612, 1173
BstMWI GCNNNNNNNGC 5 cut(s) 125, 302, 986, 998, 1176
BstNI CCWGG 4 cut(s) 211, 356, 461, 874
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 4 cut(s) 209, 354, 459, 872
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 3 cut(s) 283, 1001, 1081
BstV2I GAAGAC 1 cut(s) 850
BstXI CCANNNNNNTGG 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 1006
BsuRI GGCC 4 cut(s) 899, 960, 1036, 1186
BsuTUI ATCGAT 1 cut(s) 1006
BtsCI GGATG 3 cut(s) 220, 406, 700
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 84, 114
Cac8I GCNNGC 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 540, 897
ClaI ATCGAT 1 cut(s) 1006
Csp6I GTAC 5 cut(s) 34, 597, 698, 964, 1164
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviQI GTAC 5 cut(s) 34, 597, 698, 964, 1164
DdeI CTNAG 4 cut(s) 53, 150, 600, 762
DpnI GATC 3 cut(s) 98, 614, 1175
DpnII GATC 3 cut(s) 96, 612, 1173
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 3 cut(s) 758, 929, 980
Eco130I CCWWGG 3 cut(s) 300, 562, 573
Eco24I GRGCYC 3 cut(s) 760, 931, 982
Eco47I GGWCC 1 cut(s) 540
Eco53kI GAGCTC 3 cut(s) 758, 929, 980
Eco57I CTGAAG 2 cut(s) 1058, 1165
Eco88I CYCGRG 1 cut(s) 1025
EcoICRI GAGCTC 3 cut(s) 758, 929, 980
EcoRII CCWGG 4 cut(s) 209, 354, 459, 872
EcoT14I CCWWGG 3 cut(s) 300, 562, 573
EcoT22I ATGCAT 1 cut(s) 1013
EcoT38I GRGCYC 3 cut(s) 760, 931, 982
ErhI CCWWGG 3 cut(s) 300, 562, 573
Esp3I CGTCTC 1 cut(s) 56
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 2 cut(s) 635, 754
FauI CCCGC 1 cut(s) 1205
Fnu4HI GCNGC 4 cut(s) 297, 990, 1070, 1201
FokI GGATG 3 cut(s) 207, 393, 707
FriOI GRGCYC 3 cut(s) 760, 931, 982
Fsp4HI GCNGC 4 cut(s) 297, 990, 1070, 1201
FspBI CTAG 1 cut(s) 392
GluI GCNGC 4 cut(s) 297, 990, 1070, 1201
HaeIII GGCC 4 cut(s) 899, 960, 1036, 1186
HapII CCGG 1 cut(s) 454
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 6 cut(s) 13, 496, 515, 650, 1079, 1104
HpaII CCGG 1 cut(s) 454
HphI GGTGA 3 cut(s) 173, 719, 1097
Hpy166II GTNNAC 2 cut(s) 375, 869
Hpy188I TCNGA 3 cut(s) 60, 153, 676
Hpy188III TCNNGA 7 cut(s) 224, 362, 620, 761, 840, 854, 1076
Hpy8I GTNNAC 2 cut(s) 375, 869
HpyAV CCTTC 6 cut(s) 22, 150, 341, 390, 504, 950
HpyCH4III ACNGT 2 cut(s) 79, 866
HpyCH4IV ACGT 2 cut(s) 49, 624
HpyCH4V TGCA 6 cut(s) 82, 119, 584, 792, 1001, 1011
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 302, 986, 998, 1176
HpyF3I CTNAG 4 cut(s) 53, 150, 600, 762
HpySE526I ACGT 2 cut(s) 49, 624
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 3 cut(s) 96, 612, 1173
LmnI GCTCC 4 cut(s) 462, 755, 763, 977
Lsp1109I GCAGC 3 cut(s) 283, 1001, 1081
LweI GCATC 2 cut(s) 934, 998
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 49, 624
MaeIII GTNAC 2 cut(s) 1054, 1085
MalI GATC 3 cut(s) 98, 614, 1175
MboI GATC 3 cut(s) 96, 612, 1173
MboII GAAGA 5 cut(s) 178, 343, 565, 581, 855
MhlI GDGCHC 3 cut(s) 760, 931, 982
MluCI AATT 8 cut(s) 109, 283, 321, 381, 470, 883, 935, 1141
MnlI CCTC 9 cut(s) 151, 159, 358, 436, 489, 595, 1042, 1087, 1131
Mph1103I ATGCAT 1 cut(s) 1013
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 6 cut(s) 264, 320, 627, 725, 984, 1145
MslI CAYNNNNRTG 3 cut(s) 504, 535, 750
MspA1I CMGCKG 2 cut(s) 296, 704
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 4 cut(s) 211, 356, 461, 874
MvaI CCWGG 4 cut(s) 211, 356, 461, 874
MwoI GCNNNNNNNGC 5 cut(s) 125, 302, 986, 998, 1176
NdeII GATC 3 cut(s) 96, 612, 1173
NlaIV GGNNCC 3 cut(s) 35, 458, 542
NmuCI GTSAC 2 cut(s) 1054, 1085
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 16
PasI CCCWGGG 1 cut(s) 873
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 6 cut(s) 13, 496, 515, 650, 1079, 1104
PkrI GCNGC 4 cut(s) 298, 991, 1071, 1202
Psp124BI GAGCTC 3 cut(s) 760, 931, 982
Psp6I CCWGG 4 cut(s) 209, 354, 459, 872
PspGI CCWGG 4 cut(s) 209, 354, 459, 872
PspN4I GGNNCC 3 cut(s) 35, 458, 542
PspPI GGNCC 2 cut(s) 540, 897
PvuII CAGCTG 2 cut(s) 296, 704
RsaI GTAC 5 cut(s) 35, 598, 699, 965, 1165
RsaNI GTAC 5 cut(s) 34, 597, 698, 964, 1164
RseI CAYNNNNRTG 3 cut(s) 504, 535, 750
SacI GAGCTC 3 cut(s) 760, 931, 982
SaqAI TTAA 6 cut(s) 264, 320, 627, 725, 984, 1145
SatI GCNGC 4 cut(s) 297, 990, 1070, 1201
Sau3AI GATC 3 cut(s) 96, 612, 1173
Sau96I GGNCC 2 cut(s) 540, 897
ScaI AGTACT 1 cut(s) 965
ScrFI CCNGG 4 cut(s) 211, 356, 461, 874
SduI GDGCHC 3 cut(s) 760, 931, 982
SfaNI GCATC 2 cut(s) 934, 998
SfcI CTRYAG 1 cut(s) 774
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 3 cut(s) 504, 535, 750
Sse9I AATT 8 cut(s) 109, 283, 321, 381, 470, 883, 935, 1141
SsiI CCGC 1 cut(s) 1198
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 3 cut(s) 760, 931, 982
StyD4I CCNGG 4 cut(s) 209, 354, 459, 872
StyI CCWWGG 3 cut(s) 300, 562, 573
TaaI ACNGT 2 cut(s) 79, 866
TaiI ACGT 2 cut(s) 52, 627
TaqI TCGA 3 cut(s) 16, 648, 1006
TasI AATT 8 cut(s) 109, 283, 321, 381, 470, 883, 935, 1141
TatI WGTACW 2 cut(s) 963, 1163
TfiI GAWTC 6 cut(s) 13, 496, 515, 650, 1079, 1104
Tru1I TTAA 6 cut(s) 264, 320, 627, 725, 984, 1145
Tru9I TTAA 6 cut(s) 264, 320, 627, 725, 984, 1145
TscAI CASTG 2 cut(s) 84, 121
TseFI GTSAC 2 cut(s) 1054, 1085
TseI GCWGC 4 cut(s) 296, 989, 1069, 1200
Tsp45I GTSAC 2 cut(s) 1054, 1085
TspRI CASTG 2 cut(s) 84, 121
VpaK11BI GGWCC 1 cut(s) 540
XapI RAATTY 4 cut(s) 109, 381, 470, 935
XceI RCATGY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 965
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.