FvH4_7g22592

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000305
Physical Location & Seq
Forward (+)
17790179 .. 17793868
3690 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22592.t1

Sequence Viewer

Length: 1284 bp
ATGAGTGGTGGGATTCGTACAAGCGTGAAGGGGTTCCTGAATGCAAAACGCCTCGCTTTGTCTTCGAAAATAGATACAGTGCATGAGACAAATGAGAACATCAACGAGAACATCACTCGCAATTTCACTGCGCTCCAAGCCGCTGCTGATTCTGTGGATAAGATGAAAGCACAAGAGACTCCAATGTTCAGTATATGTGATGTGCCTTCAACTCCTCAGACACAGGGTGAGAATTTGCTAAGAAGATTCTTCTATAACGAACTGAAAACAGCGACCTGGAACTTTCATCCTGAAAATAAGCTGGGCGAAGGTAGTTTTGGTCAAGTTTTTAAGGGGTGGGTTGATGACAATACATCAACAGCTGCTAAGCCCGGAACTGGCATGTTAGTTGCTGTGAAGAACATTAACCGAGAAGGTTTACAGGGTCATGAAGAATGGTTGACAGAAATTTACTACCTGGGAAGGCTGCATCATCCAAATGTTGTGAAGTTGTTGGGTTATTGCTTCGAGGATGACCACCAGCTTCTGGTTTATGAATTTATGGCTTATCGAAGCTTGGAAGTTCATCTATTTGGATGGGTGTCTTACCTTCAACCACTTTCGTGGATCCTGCGTATGAAGATTGCTCTTGGTGCTGCCAAGTCCCTAGCATTTATTCATAGTAGTGAGGGAAAAGTGATCCATCGAGACTTTAAAAGTTCTAATATCCTACTGGATTCAAACTACAATGCCAAACTCTCTGATTTTGGTTTTGCCAAGGATGGACCAGCCGGTGGTAGTAGCCATGTCTCGACAAGGGTAATGGGGACATACGGATATGCAGCTCCAGAGTATGTTGCTACAGGTCATTTAACCGGTAAGAATGATGTGTATGGTTTCGGAGTTGTTATGCTCGAATTGTTGTCTGGAAGAAAAGTTCTTGAAATCAGCCGGCCAACCAGGGAACAGGATCTAGTTGAATGGGCTAAACCATACCTTGCCAGCAAACGTGGAGTTCTCAAAATTTTTGATGCTCGTATCAAAGGCCAGTATTCTGTGGCTGCAGCTCGTAAAGCGGCTAACCTTGCAAGTCGATGCTTATCAGTAGAACCCAGGTTGAGGCCAAACATGAATGAGGTGGTAACAGCATTGGAGCAGCTTCAGGAATCAGGTAACATTGAGGGGTCAGGAATCTCTCTAAACGAGCTTCGCCAATCTCTATATTCTAATTCAAACAGTGCTAAATCAAGCTGGAAAAGTTGGATCAGCTTCAGGTCATCTGTTTCTTGCGGCTACATAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

428

Amino Acids

47.54

Weight (kDa)

9.02

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 95 - 374 4.9e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 98 - 377 5.6e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 526, 773
AciI CCGC 3 cut(s) 141, 1055, 1269
AclWI GGATC 5 cut(s) 601, 614, 673, 957, 1250
AcoI YGGCCR 1 cut(s) 932
AcsI RAATTY 4 cut(s) 232, 447, 536, 1002
AcuI CTGAAG 2 cut(s) 1124, 1234
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 4 cut(s) 377, 526, 773, 1098
AgeI ACCGGT 1 cut(s) 854
AgsI TTSAA 6 cut(s) 210, 593, 720, 923, 959, 1212
AjnI CCWGG 4 cut(s) 275, 456, 938, 1091
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AleI CACNNNNGTG 1 cut(s) 601
AloI GAACNNNNNNTCC 2 cut(s) 900, 932
Alw26I GTCTC 4 cut(s) 80, 170, 681, 793
AlwI GGATC 5 cut(s) 601, 614, 673, 957, 1250
AlwNI CAGNNNCTG 1 cut(s) 526
AoxI GGCC 3 cut(s) 932, 1024, 1100
ApeKI GCWGC 8 cut(s) 143, 362, 466, 635, 821, 1040, 1043, 1135
ApoI RAATTY 4 cut(s) 232, 447, 536, 1002
AsiGI ACCGGT 1 cut(s) 854
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 764
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 239
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 764
BamHI GGATCC 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 8 cut(s) 130, 349, 453, 622, 833, 1027, 1055, 1147
BccI CCATC 3 cut(s) 570, 690, 755
BciT130I CCWGG 4 cut(s) 277, 458, 940, 1093
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 4 cut(s) 80, 170, 681, 793
BfaI CTAG 2 cut(s) 647, 953
BfmI CTRYAG 2 cut(s) 840, 1041
BlpI GCTNAGC 1 cut(s) 366
Bme1390I CCNGG 5 cut(s) 277, 372, 458, 940, 1093
Bme18I GGWCC 1 cut(s) 764
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 2 cut(s) 35, 608
BmrFI CCNGG 5 cut(s) 277, 372, 458, 940, 1093
BmsI GCATC 3 cut(s) 478, 1000, 1064
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 810
Bpu1102I GCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 1078
BsaJI CCNNGG 4 cut(s) 457, 756, 939, 1091
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 4 cut(s) 377, 526, 773, 1098
Bse118I RCCGGY 3 cut(s) 770, 854, 930
Bse1I ACTGG 3 cut(s) 382, 717, 1027
Bse8I GATNNNNATC 1 cut(s) 1078
BseBI CCWGG 4 cut(s) 277, 458, 940, 1093
BseDI CCNNGG 4 cut(s) 457, 756, 939, 1091
BseGI GGATG 5 cut(s) 286, 472, 517, 581, 766
BseJI GATNNNNATC 1 cut(s) 1078
BseLI CCNNNNNNNGG 4 cut(s) 377, 526, 773, 1098
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 3 cut(s) 382, 717, 1027
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 8 cut(s) 130, 349, 453, 622, 833, 1027, 1055, 1147
BseYI CCCAGC 1 cut(s) 301
BshFI GGCC 3 cut(s) 934, 1026, 1102
BshTI ACCGGT 1 cut(s) 854
BsiSI CCGG 4 cut(s) 372, 771, 855, 931
BslFI GGGAC 2 cut(s) 628, 820
BslI CCNNNNNNNGG 4 cut(s) 377, 526, 773, 1098
BsmAI GTCTC 4 cut(s) 80, 170, 681, 793
BsmFI GGGAC 2 cut(s) 628, 820
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 3 cut(s) 934, 1026, 1102
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 4 cut(s) 606, 678, 949, 1242
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 3 cut(s) 141, 1055, 1269
BspANI GGCC 3 cut(s) 934, 1026, 1102
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 35, 608
BspMAI CTGCAG 1 cut(s) 1045
BspPI GGATC 5 cut(s) 601, 614, 673, 957, 1250
BspT104I TTCGAA 1 cut(s) 65
BsrFI RCCGGY 3 cut(s) 770, 854, 930
BsrI ACTGG 3 cut(s) 382, 717, 1027
BssAI RCCGGY 3 cut(s) 770, 854, 930
BssECI CCNNGG 4 cut(s) 457, 756, 939, 1091
BssMI GATC 4 cut(s) 606, 678, 949, 1242
BssT1I CCWWGG 1 cut(s) 756
Bst2UI CCWGG 4 cut(s) 277, 458, 940, 1093
Bst4CI ACNGT 2 cut(s) 79, 1217
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 932, 982
BstDEI CTNAG 3 cut(s) 216, 239, 366
BstF5I GGATG 5 cut(s) 286, 472, 517, 581, 766
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 4 cut(s) 609, 681, 952, 1245
BstMAI GTCTC 4 cut(s) 80, 170, 681, 793
BstMBI GATC 4 cut(s) 606, 678, 949, 1242
BstMWI GCNNNNNNNGC 4 cut(s) 137, 632, 1052, 1064
BstNI CCWGG 4 cut(s) 277, 458, 940, 1093
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 5 cut(s) 275, 370, 456, 938, 1091
BstSFI CTRYAG 2 cut(s) 840, 1041
BstV1I GCAGC 8 cut(s) 130, 349, 453, 622, 833, 1027, 1055, 1147
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 606, 949
BstXI CCANNNNNNTGG 1 cut(s) 603
BstYI RGATCY 2 cut(s) 606, 949
BsuRI GGCC 3 cut(s) 934, 1026, 1102
BtsCI GGATG 5 cut(s) 286, 472, 517, 581, 766
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 84, 126, 1222
Cac8I GCNNGC 2 cut(s) 932, 982
CaiI CAGNNNCTG 1 cut(s) 526
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 3 cut(s) 770, 854, 930
Cfr13I GGNCC 1 cut(s) 764
Csp6I GTAC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 854
CviAII CATG 5 cut(s) 83, 382, 428, 785, 1108
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 216, 239, 366
DpnI GATC 4 cut(s) 608, 680, 951, 1244
DpnII GATC 4 cut(s) 606, 678, 949, 1242
DraI TTTAAA 1 cut(s) 694
DraIII CACNNNGTG 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 756
Eco47I GGWCC 1 cut(s) 764
Eco57I CTGAAG 2 cut(s) 1124, 1234
EcoRII CCWGG 4 cut(s) 275, 456, 938, 1091
EcoT14I CCWWGG 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 5 cut(s) 86, 385, 431, 788, 1111
FaqI GGGAC 2 cut(s) 628, 820
FatI CATG 5 cut(s) 82, 381, 427, 784, 1107
FokI GGATG 5 cut(s) 273, 459, 524, 588, 773
FspBI CTAG 2 cut(s) 647, 953
GlaI GCGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 3 cut(s) 934, 1026, 1102
HapII CCGG 4 cut(s) 372, 771, 855, 931
HhaI GCGC 1 cut(s) 133
Hin1II CATG 5 cut(s) 86, 385, 431, 788, 1111
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 7 cut(s) 13, 149, 178, 246, 716, 1145, 1170
HpaII CCGG 4 cut(s) 372, 771, 855, 931
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 419, 441
Hpy188I TCNGA 3 cut(s) 219, 742, 881
Hpy8I GTNNAC 2 cut(s) 419, 441
HpyAV CCTTC 6 cut(s) 22, 216, 302, 407, 456, 599
HpyCH4III ACNGT 2 cut(s) 79, 1217
HpyCH4IV ACGT 1 cut(s) 988
HpyCH4V TGCA 6 cut(s) 44, 82, 469, 821, 1043, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 632, 1052, 1064
HpyF3I CTNAG 3 cut(s) 216, 239, 366
HpySE526I ACGT 1 cut(s) 988
Hsp92II CATG 5 cut(s) 86, 385, 431, 788, 1111
HspAI GCGC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 930
KroNI GCCGGC 1 cut(s) 932
Kzo9I GATC 4 cut(s) 606, 678, 949, 1242
LmnI GCTCC 3 cut(s) 138, 829, 1132
Lsp1109I GCAGC 8 cut(s) 130, 349, 453, 622, 833, 1027, 1055, 1147
LweI GCATC 3 cut(s) 478, 1000, 1064
MaeI CTAG 2 cut(s) 647, 953
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 2 cut(s) 1120, 1151
MalI GATC 4 cut(s) 608, 680, 951, 1244
MboI GATC 4 cut(s) 606, 678, 949, 1242
MboII GAAGA 7 cut(s) 54, 241, 255, 409, 443, 631, 921
MflI RGATCY 2 cut(s) 606, 949
MluCI AATT 7 cut(s) 121, 232, 447, 536, 896, 1002, 1207
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 1220
MnlI CCTC 7 cut(s) 62, 225, 502, 661, 1092, 1108, 1153
MroNI GCCGGC 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 4 cut(s) 330, 405, 693, 851
MslI CAYNNNNRTG 3 cut(s) 477, 601, 663
MspA1I CMGCKG 2 cut(s) 143, 362
MspI CCGG 4 cut(s) 372, 771, 855, 931
MspR9I CCNGG 5 cut(s) 277, 372, 458, 940, 1093
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 4 cut(s) 277, 458, 940, 1093
MwoI GCNNNNNNNGC 4 cut(s) 137, 632, 1052, 1064
NaeI GCCGGC 1 cut(s) 932
NciI CCSGG 1 cut(s) 372
NdeII GATC 4 cut(s) 606, 678, 949, 1242
NgoMIV GCCGGC 1 cut(s) 930
NlaIII CATG 5 cut(s) 86, 385, 431, 788, 1111
NlaIV GGNNCC 2 cut(s) 35, 608
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 601
PagI TCATGA 1 cut(s) 427
PctI GAATGC 1 cut(s) 46
PdiI GCCGGC 1 cut(s) 932
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 6 cut(s) 13, 149, 246, 716, 1145, 1170
PflMI CCANNNNNTGG 2 cut(s) 526, 773
PinAI ACCGGT 1 cut(s) 854
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 4 cut(s) 275, 456, 938, 1091
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 4 cut(s) 275, 456, 938, 1091
PspN4I GGNNCC 2 cut(s) 35, 608
PspPI GGNCC 1 cut(s) 764
PstI CTGCAG 1 cut(s) 1045
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 2 cut(s) 606, 949
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 3 cut(s) 477, 601, 663
SaqAI TTAA 4 cut(s) 330, 405, 693, 851
Sau3AI GATC 4 cut(s) 606, 678, 949, 1242
Sau96I GGNCC 1 cut(s) 764
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 5 cut(s) 277, 372, 458, 940, 1093
SfaNI GCATC 3 cut(s) 478, 1000, 1064
SfcI CTRYAG 2 cut(s) 840, 1041
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 764
SmiMI CAYNNNNRTG 3 cut(s) 477, 601, 663
Sse9I AATT 7 cut(s) 121, 232, 447, 536, 896, 1002, 1207
SsiI CCGC 3 cut(s) 141, 1055, 1269
SspMI CTAG 2 cut(s) 647, 953
StyD4I CCNGG 5 cut(s) 275, 370, 456, 938, 1091
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 2 cut(s) 79, 1217
TaiI ACGT 1 cut(s) 991
TaqI TCGA 7 cut(s) 65, 507, 550, 685, 791, 894, 1072
TasI AATT 7 cut(s) 121, 232, 447, 536, 896, 1002, 1207
TauI GCSGC 3 cut(s) 143, 1058, 1272
TfiI GAWTC 6 cut(s) 13, 149, 246, 716, 1145, 1170
Tru1I TTAA 4 cut(s) 330, 405, 693, 851
Tru9I TTAA 4 cut(s) 330, 405, 693, 851
TscAI CASTG 3 cut(s) 84, 133, 1222
TseI GCWGC 8 cut(s) 143, 362, 466, 635, 821, 1040, 1043, 1135
TspDTI ATGAA 8 cut(s) 179, 275, 444, 549, 554, 632, 647, 1124
TspGWI ACGGA 1 cut(s) 828
TspRI CASTG 3 cut(s) 84, 133, 1222
Van91I CCANNNNNTGG 2 cut(s) 526, 773
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 4 cut(s) 232, 447, 536, 1002
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 647, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.