Rmu_sc0002690.1_g000002
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002690.1
OG0000305
Physical Location & Seq
Forward (+)
10835 .. 14465
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002690.1_g000002.1.cds

Sequence Viewer

Length: 786 bp
atgcaaagaaacaactgtcctcttcgagagcaaacacgcagactctgcgcaataggttgcaaaacacccgtctcgggggcaaccatgcaaaataccagaaaaaagcagggccgccttcgcctctctgaaattcccaagccagcccgagtggccggacaacctggaggagctccgagtacttactcgccatcctccacagcccggaaagccaagtcactcatcttccgaaaagatgacgtcgactggacaaaggttgagatcttgctaaagagcttcttttttaatgaactaaaaaccgccaccagaaacttttggcctgataatgtggtgggtgagggtggttttggtactgtctttaaggggtggattgatcagaattcattagcagctgccaagcctggtcatctaaacaccaaatgtgatgtgtatggttttggagctgttgtgctcgaattgttgtcaggaaaacgagtttttgacaggaatcggccacccggggaacagaaattagttaaatgggcaaaaccttaccatgtcagcaaacagagagtcctccaaattttttattctcatattaaaggccagttttctgtggccaaagctcttaaagcagttgaccttgcatttctttgcctatcgagagatcccaagcttaggccaaacatgaataatgtggtaaaaacattggagaagcttcaggaatccagtgacatggatggcttggggatctctcaaaataaacgtcgccaatatccacatggcagtttaatcaatggtcccaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

261

Amino Acids

29.18

Weight (kDa)

10.2

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
Acc16I TGCGCA 1 cut(s) 49
AccI GTMKAC 1 cut(s) 240
AciI CCGC 2 cut(s) 112, 297
AclWI GGATC 2 cut(s) 638, 734
AcoI YGGCCR 3 cut(s) 150, 488, 594
AcsI RAATTY 3 cut(s) 129, 376, 558
AcuI CTGAAG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 178, 349
AfiI CCNNNNNNNGG 4 cut(s) 74, 75, 201, 654
AjnI CCWGG 2 cut(s) 160, 397
AluBI AGCT 7 cut(s) 170, 273, 389, 440, 602, 652, 694
AluI AGCT 7 cut(s) 170, 273, 389, 440, 602, 652, 694
Alw21I GWGCWC 2 cut(s) 172, 450
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 2 cut(s) 638, 734
AlwNI CAGNNNCTG 1 cut(s) 45
Ama87I CYCGRG 3 cut(s) 73, 144, 494
AoxI GGCC 7 cut(s) 109, 150, 314, 488, 580, 594, 656
ApeKI GCWGC 2 cut(s) 386, 389
ApoI RAATTY 3 cut(s) 129, 376, 558
ArsI GACNNNNNNTTYG 6 cut(s) 54, 86, 534, 566, 727, 759
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 109, 776
AsuC2I CCSGG 3 cut(s) 202, 495, 496
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 3 cut(s) 73, 144, 494
AvaII GGWCC 1 cut(s) 776
BalI TGGCCA 1 cut(s) 596
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 2 cut(s) 172, 450
BbvI GCAGC 2 cut(s) 376, 398
BccI CCATC 2 cut(s) 196, 710
BciT130I CCWGG 2 cut(s) 162, 399
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 3 cut(s) 202, 495, 496
BcoDI GTCTC 1 cut(s) 76
BglI GCCNNNNNGGC 1 cut(s) 149
BglII AGATCT 1 cut(s) 258
BisI GCNGC 3 cut(s) 112, 387, 390
BlsI GCNGC 3 cut(s) 113, 388, 391
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 5 cut(s) 162, 202, 399, 495, 496
Bme18I GGWCC 1 cut(s) 776
BmeT110I CYCGRG 3 cut(s) 73, 144, 494
BmgT120I GGNCC 2 cut(s) 109, 776
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 5 cut(s) 162, 202, 399, 495, 496
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 653
BpuMI CCSGG 3 cut(s) 202, 495, 496
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 494, 495
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 75, 201, 654
Bse1I ACTGG 3 cut(s) 248, 583, 705
BseBI CCWGG 2 cut(s) 162, 399
BseDI CCNNGG 2 cut(s) 494, 495
BseGI GGATG 2 cut(s) 188, 721
BseLI CCNNNNNNNGG 4 cut(s) 74, 75, 201, 654
BseNI ACTGG 3 cut(s) 248, 583, 705
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 376, 398
BshFI GGCC 7 cut(s) 111, 152, 316, 490, 582, 596, 658
BsiHKAI GWGCWC 2 cut(s) 172, 450
BsiHKCI CYCGRG 3 cut(s) 73, 144, 494
BsiSI CCGG 3 cut(s) 153, 202, 495
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 4 cut(s) 74, 75, 201, 654
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 762
BsnI GGCC 7 cut(s) 111, 152, 316, 490, 582, 596, 658
BsoBI CYCGRG 3 cut(s) 73, 144, 494
Bsp1286I GDGCHC 2 cut(s) 172, 450
Bsp143I GATC 4 cut(s) 258, 370, 643, 726
BspACI CCGC 2 cut(s) 112, 297
BspANI GGCC 7 cut(s) 111, 152, 316, 490, 582, 596, 658
BspLI GGNNCC 1 cut(s) 778
BspPI GGATC 2 cut(s) 638, 734
BsrI ACTGG 3 cut(s) 248, 583, 705
BssECI CCNNGG 2 cut(s) 494, 495
BssMI GATC 4 cut(s) 258, 370, 643, 726
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 162, 399
Bst4CI ACNGT 2 cut(s) 17, 352
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 653
BstF5I GGATG 2 cut(s) 188, 721
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 4 cut(s) 261, 373, 646, 729
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 4 cut(s) 258, 370, 643, 726
BstMWI GCNNNNNNNGC 5 cut(s) 45, 117, 149, 206, 608
BstNI CCWGG 2 cut(s) 162, 399
BstSCI CCNGG 5 cut(s) 160, 200, 397, 493, 494
BstV1I GCAGC 2 cut(s) 376, 398
BstX2I RGATCY 3 cut(s) 258, 643, 726
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 3 cut(s) 258, 643, 726
BsuRI GGCC 7 cut(s) 111, 152, 316, 490, 582, 596, 658
BtsCI GGATG 2 cut(s) 188, 721
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 109, 776
Cfr9I CCCGGG 1 cut(s) 494
Csp6I GTAC 2 cut(s) 177, 348
CviAII CATG 5 cut(s) 85, 533, 664, 712, 758
CviQI GTAC 2 cut(s) 177, 348
DdeI CTNAG 1 cut(s) 653
DpnI GATC 4 cut(s) 260, 372, 645, 728
DpnII GATC 4 cut(s) 258, 370, 643, 726
EaeI YGGCCR 3 cut(s) 150, 488, 594
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 680
Eco88I CYCGRG 3 cut(s) 73, 144, 494
EcoICRI GAGCTC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 160, 397
EcoT38I GRGCYC 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 5 cut(s) 88, 536, 667, 715, 761
FaiI YATR 7 cut(s) 86, 429, 534, 573, 665, 713, 759
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 762
FatI CATG 5 cut(s) 84, 532, 663, 711, 757
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 112, 387, 390
FokI GGATG 2 cut(s) 175, 728
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 112, 387, 390
FspI TGCGCA 1 cut(s) 49
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 112, 387, 390
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 7 cut(s) 111, 152, 316, 490, 582, 596, 658
HapII CCGG 3 cut(s) 153, 202, 495
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 5 cut(s) 88, 536, 667, 715, 761
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 2 cut(s) 241, 616
HindII GTYRAC 2 cut(s) 241, 616
HindIII AAGCTT 2 cut(s) 650, 692
HinfI GANTC 4 cut(s) 42, 484, 549, 701
HpaII CCGG 3 cut(s) 153, 202, 495
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 241, 616
Hpy188I TCNGA 4 cut(s) 127, 174, 227, 375
Hpy188III TCNNGA 4 cut(s) 26, 462, 639, 698
Hpy8I GTNNAC 2 cut(s) 241, 616
Hpy99I CGWCG 2 cut(s) 242, 747
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 17, 352
HpyCH4IV ACGT 2 cut(s) 237, 742
HpyCH4V TGCA 4 cut(s) 4, 60, 88, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 117, 149, 206, 608
HpyF3I CTNAG 1 cut(s) 653
HpySE526I ACGT 2 cut(s) 237, 742
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 5 cut(s) 88, 536, 667, 715, 761
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 258, 370, 643, 726
LmnI GCTCC 3 cut(s) 167, 175, 437
Lsp1109I GCAGC 2 cut(s) 376, 398
MaeII ACGT 2 cut(s) 237, 742
MaeIII GTNAC 2 cut(s) 213, 707
MalI GATC 4 cut(s) 260, 372, 645, 728
MboI GATC 4 cut(s) 258, 370, 643, 726
MboII GAAGA 2 cut(s) 14, 214
MflI RGATCY 3 cut(s) 258, 643, 726
MhlI GDGCHC 2 cut(s) 172, 450
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 5 cut(s) 129, 376, 452, 506, 558
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 2 cut(s) 36, 558
MnlI CCTC 6 cut(s) 30, 131, 158, 202, 328, 563
Mox20I TGGCCA 1 cut(s) 596
MscI TGGCCA 1 cut(s) 596
MseI TTAA 6 cut(s) 282, 357, 513, 576, 606, 767
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 3 cut(s) 153, 202, 495
MspR9I CCNGG 5 cut(s) 162, 202, 399, 495, 496
MvaI CCWGG 2 cut(s) 162, 399
MwoI GCNNNNNNNGC 5 cut(s) 45, 117, 149, 206, 608
NciI CCSGG 3 cut(s) 202, 495, 496
NdeII GATC 4 cut(s) 258, 370, 643, 726
NlaIII CATG 5 cut(s) 88, 536, 667, 715, 761
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 2 cut(s) 213, 707
NsbI TGCGCA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 484, 701
PkrI GCNGC 3 cut(s) 113, 388, 391
PleI GAGTC 2 cut(s) 36, 557
PpsI GAGTC 2 cut(s) 36, 557
Psp124BI GAGCTC 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 160, 397
PspGI CCWGG 2 cut(s) 160, 397
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 2 cut(s) 109, 776
PstNI CAGNNNCTG 1 cut(s) 45
PsuI RGATCY 3 cut(s) 258, 643, 726
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 178, 349
RsaNI GTAC 2 cut(s) 177, 348
SacI GAGCTC 1 cut(s) 172
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 6 cut(s) 282, 357, 513, 576, 606, 767
SatI GCNGC 3 cut(s) 112, 387, 390
Sau3AI GATC 4 cut(s) 258, 370, 643, 726
Sau96I GGNCC 2 cut(s) 109, 776
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 2 cut(s) 36, 558
ScrFI CCNGG 5 cut(s) 162, 202, 399, 495, 496
SduI GDGCHC 2 cut(s) 172, 450
SinI GGWCC 1 cut(s) 776
SmaI CCCGGG 1 cut(s) 496
Sse9I AATT 5 cut(s) 129, 376, 452, 506, 558
SsiI CCGC 2 cut(s) 112, 297
SstI GAGCTC 1 cut(s) 172
StyD4I CCNGG 5 cut(s) 160, 200, 397, 493, 494
TaaI ACNGT 2 cut(s) 17, 352
TaiI ACGT 2 cut(s) 240, 745
TaqI TCGA 4 cut(s) 25, 240, 450, 638
TasI AATT 5 cut(s) 129, 376, 452, 506, 558
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 2 cut(s) 484, 701
Tru1I TTAA 6 cut(s) 282, 357, 513, 576, 606, 767
Tru9I TTAA 6 cut(s) 282, 357, 513, 576, 606, 767
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 2 cut(s) 213, 707
TseI GCWGC 2 cut(s) 386, 389
Tsp45I GTSAC 2 cut(s) 213, 707
TspDTI ATGAA 3 cut(s) 300, 369, 680
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 3 cut(s) 129, 376, 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XmaI CCCGGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 240
ZraI GACGTC 1 cut(s) 238
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.