RLG00000027278
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000305
Physical Location & Seq
Reverse (-)
10234061 .. 10262841
28781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027278

Sequence Viewer

Length: 945 bp
ATGAGTGGTGGGATTCGTACAAGCGTGAAGGGGTACCTTATTGCCAAACGCCTGGCTTTCACTGGGGAAATTGATACAGTGCATGAGGTGAATGACATCATCAATAGCAATTTGACTGGGACGCAAGCTTCTGATGATTTAGTAGATAAGAGACCACAAGATCATCCGGTGACGAGTCGTGCTTCAACTTCATATGGGCTCAGTATAGGTGATGATAGCATTCTTCACTTGCCAATGTTGAGCAATGCTGCAAAGAGCATGGATTCAAATTGGAATAGAATCTGCAGAGCTGTGAGTCTGCCCAATGATGCAGTGTCTTCTTGTCCTCGGACAGAAGGGGAGATTTTGCTGAGGAGATTCTTCTTAAATGAACTTAAAATAGCGACCTGGAACTTCCATCCTGATAATATGGTGGGCGAAGGTGGTTTTGGTTCTGTTTTCAAGGGGTGGGTTGACGACTCATCAACAGCTGCCAACCCTGGTAAGGGCATGTTGATTGCTGTGAAGAGGATTAACAAAGAAGGCTTCTTGGGTCACGAGCAATGGTTGACAGAAATTTACTACCTAGGACGGCTGCGTCATCCAAATCTTGTGAAATTGTTGGGTTATTGCTTTGAAGATGATCATCGGCTTCTGGTGTTTGAATTTATGTCTCGTGGCGGCTTGGATAATCATATATTTGGAAGGGATTCTTGTCTTCAACCACTTTCATGGAACCTGCGTATGAAGATTTCCCTTGAGGCTGCTAATGTTCTAGCATTTCTTCACAATGGTGAGGAAACAGTAATCCATCGGGACATTGCAAGTTCTAATATCCTGTTGGATTCAACTTACAATGCCAAACTATCCGACTTTGGTTTCGCAAAGGATGGACCCGCAGGTGATACAAGACATGTCTCAACAGCAGTGATGGGGGCACATGGGTCATTTAACTGCCAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

315

Amino Acids

34.69

Weight (kDa)

6.17

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 133 - 295 2.3e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 135 - 295 1.4e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 869
AasI GACNNNNNNGTC 1 cut(s) 576
Acc36I ACCTGC 2 cut(s) 726, 869
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 2 cut(s) 660, 876
AcsI RAATTY 2 cut(s) 555, 644
AfaI GTAC 2 cut(s) 19, 35
AfiI CCNNNNNNNGG 2 cut(s) 484, 485
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 7 cut(s) 186, 267, 442, 617, 644, 701, 828
AjnI CCWGG 3 cut(s) 51, 386, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AleI CACNNNNGTG 1 cut(s) 771
AluBI AGCT 3 cut(s) 128, 290, 470
AluI AGCT 3 cut(s) 128, 290, 470
Alw26I GTCTC 3 cut(s) 145, 657, 901
ApeKI GCWGC 4 cut(s) 248, 470, 574, 743
ApoI RAATTY 2 cut(s) 555, 644
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
Asp700I GAANNNNTTC 1 cut(s) 688
Asp718I GGTACC 1 cut(s) 33
AspA2I CCTAGG 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 872
AsuHPI GGTGA 5 cut(s) 100, 181, 221, 785, 893
AvaII GGWCC 1 cut(s) 872
AvrII CCTAGG 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 2 cut(s) 536, 654
BbsI GAAGAC 2 cut(s) 309, 689
BbvCI CCTCAGC 1 cut(s) 350
BbvI GCAGC 4 cut(s) 235, 457, 561, 730
BccI CCATC 4 cut(s) 405, 798, 863, 904
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 3 cut(s) 53, 388, 480
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 145, 657, 901
BfaI CTAG 2 cut(s) 566, 755
BfmI CTRYAG 1 cut(s) 283
BfuAI ACCTGC 2 cut(s) 726, 869
BisI GCNGC 5 cut(s) 249, 471, 575, 661, 744
BlnI CCTAGG 1 cut(s) 565
BlsI GCNGC 5 cut(s) 250, 472, 576, 662, 745
Bme1390I CCNGG 3 cut(s) 53, 388, 480
Bme18I GGWCC 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 872
BmiI GGNNCC 3 cut(s) 35, 716, 874
BmrFI CCNGG 3 cut(s) 53, 388, 480
BmrI ACTGGG 2 cut(s) 72, 126
BmsI GCATC 1 cut(s) 298
BmuI ACTGGG 2 cut(s) 72, 126
BpiI GAAGAC 2 cut(s) 309, 689
Bpu10I CCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 758
BsaBI GATNNNNATC 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 326, 478, 565
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 485
Bse1I ACTGG 2 cut(s) 67, 121
Bse3DI GCAATG 3 cut(s) 250, 548, 798
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 3 cut(s) 53, 388, 480
BseDI CCNNGG 3 cut(s) 326, 478, 565
BseGI GGATG 4 cut(s) 163, 397, 580, 874
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 2 cut(s) 484, 485
BseMI GCAATG 3 cut(s) 250, 548, 798
BseMII CTCAG 2 cut(s) 214, 341
BseNI ACTGG 2 cut(s) 67, 121
BseRI GAGGAG 1 cut(s) 367
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 4 cut(s) 235, 457, 561, 730
BshNI GGYRCC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 133, 809
BslI CCNNNNNNNGG 2 cut(s) 484, 485
BsmAI GTCTC 3 cut(s) 145, 657, 901
BsmFI GGGAC 2 cut(s) 133, 809
BsmI GAATGC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 201, 919
Bsp143I GATC 2 cut(s) 160, 622
BspACI CCGC 2 cut(s) 660, 876
BspCNI CTCAG 2 cut(s) 213, 342
BspLI GGNNCC 3 cut(s) 35, 716, 874
BspMAI CTGCAG 1 cut(s) 287
BspMI ACCTGC 2 cut(s) 726, 869
BspT107I GGYRCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 145
BsrDI GCAATG 3 cut(s) 250, 548, 798
BsrI ACTGG 2 cut(s) 67, 121
BssECI CCNNGG 3 cut(s) 326, 478, 565
BssMI GATC 2 cut(s) 160, 622
BssSI CACGAG 2 cut(s) 536, 654
BssT1I CCWWGG 1 cut(s) 565
Bst2BI CACGAG 2 cut(s) 536, 654
Bst2UI CCWGG 3 cut(s) 53, 388, 480
Bst4CI ACNGT 2 cut(s) 79, 784
Bst6I CTCTTC 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 200, 350
BstF5I GGATG 4 cut(s) 163, 397, 580, 874
BstKTI GATC 2 cut(s) 163, 625
BstMAI GTCTC 3 cut(s) 145, 657, 901
BstMBI GATC 2 cut(s) 160, 622
BstNI CCWGG 3 cut(s) 53, 388, 480
BstNSI RCATGY 2 cut(s) 493, 896
BstSCI CCNGG 3 cut(s) 51, 386, 478
BstSFI CTRYAG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 919
BstV1I GCAGC 4 cut(s) 235, 457, 561, 730
BstV2I GAAGAC 2 cut(s) 309, 689
BstXI CCANNNNNNTGG 2 cut(s) 52, 711
BtsCI GGATG 4 cut(s) 163, 397, 580, 874
BtsI GCAGTG 2 cut(s) 318, 912
BtsIMutI CAGTG 4 cut(s) 60, 84, 318, 912
BveI ACCTGC 2 cut(s) 726, 869
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 872
CseI GACGC 2 cut(s) 130, 566
Csp6I GTAC 2 cut(s) 18, 34
CviAII CATG 6 cut(s) 83, 259, 490, 711, 893, 920
CviQI GTAC 2 cut(s) 18, 34
DdeI CTNAG 2 cut(s) 200, 350
DpnI GATC 2 cut(s) 162, 624
DpnII GATC 2 cut(s) 160, 622
DrdI GACNNNNNNGTC 1 cut(s) 576
DseDI GACNNNNNNGTC 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 872
EcoRII CCWGG 3 cut(s) 51, 386, 478
EcoT14I CCWWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 6 cut(s) 86, 262, 493, 714, 896, 923
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 2 cut(s) 133, 809
FatI CATG 6 cut(s) 82, 258, 489, 710, 892, 919
FauI CCCGC 1 cut(s) 883
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 5 cut(s) 249, 471, 575, 661, 744
FokI GGATG 4 cut(s) 150, 384, 567, 881
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 5 cut(s) 249, 471, 575, 661, 744
FspBI CTAG 2 cut(s) 566, 755
GluI GCNGC 5 cut(s) 249, 471, 575, 661, 744
HapII CCGG 1 cut(s) 167
HgaI GACGC 2 cut(s) 130, 566
Hin1II CATG 6 cut(s) 86, 262, 493, 714, 896, 923
HincII GTYRAC 2 cut(s) 454, 549
HindII GTYRAC 2 cut(s) 454, 549
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 9 cut(s) 13, 175, 263, 279, 295, 357, 458, 689, 824
HpaII CCGG 1 cut(s) 167
HphI GGTGA 5 cut(s) 100, 181, 221, 785, 893
Hpy166II GTNNAC 2 cut(s) 454, 549
Hpy188I TCNGA 3 cut(s) 133, 330, 850
Hpy188III TCNNGA 3 cut(s) 401, 536, 794
Hpy8I GTNNAC 2 cut(s) 454, 549
HpyAV CCTTC 5 cut(s) 22, 329, 413, 515, 678
HpyCH4III ACNGT 2 cut(s) 79, 784
HpyCH4V TGCA 5 cut(s) 82, 251, 285, 311, 803
HpyF3I CTNAG 2 cut(s) 200, 350
Hsp92II CATG 6 cut(s) 86, 262, 493, 714, 896, 923
KpnI GGTACC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 2 cut(s) 160, 622
Lsp1109I GCAGC 4 cut(s) 235, 457, 561, 730
LweI GCATC 1 cut(s) 298
MaeI CTAG 2 cut(s) 566, 755
MaeIII GTNAC 2 cut(s) 169, 533
MalI GATC 2 cut(s) 162, 624
MboI GATC 2 cut(s) 160, 622
MboII GAAGA 8 cut(s) 215, 309, 352, 517, 629, 689, 739, 755
MhlI GDGCHC 2 cut(s) 201, 919
MluCI AATT 6 cut(s) 69, 109, 268, 555, 596, 644
MlyI GAGTC 3 cut(s) 184, 304, 452
MmeI TCCRAC 2 cut(s) 801, 873
MnlI CCTC 6 cut(s) 79, 336, 345, 501, 733, 769
MroXI GAANNNNTTC 1 cut(s) 688
MseI TTAA 4 cut(s) 365, 375, 513, 930
MslI CAYNNNNRTG 2 cut(s) 709, 771
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 53, 388, 480
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 3 cut(s) 53, 388, 480
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 160, 622
NlaIII CATG 6 cut(s) 86, 262, 493, 714, 896, 923
NlaIV GGNNCC 3 cut(s) 35, 716, 874
NmuCI GTSAC 2 cut(s) 169, 533
NspI RCATGY 2 cut(s) 493, 896
OliI CACNNNNGTG 1 cut(s) 771
PaqCI CACCTGC 1 cut(s) 869
PciI ACATGT 1 cut(s) 892
PctI GAATGC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 6 cut(s) 13, 263, 279, 357, 689, 824
PkrI GCNGC 5 cut(s) 250, 472, 576, 662, 745
PleI GAGTC 3 cut(s) 183, 303, 452
PpsI GAGTC 3 cut(s) 183, 303, 452
PscI ACATGT 1 cut(s) 892
Psp6I CCWGG 3 cut(s) 51, 386, 478
PspGI CCWGG 3 cut(s) 51, 386, 478
PspN4I GGNNCC 3 cut(s) 35, 716, 874
PspPI GGNCC 1 cut(s) 872
PstI CTGCAG 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 19, 35
RsaNI GTAC 2 cut(s) 18, 34
RseI CAYNNNNRTG 2 cut(s) 709, 771
SaqAI TTAA 4 cut(s) 365, 375, 513, 930
SatI GCNGC 5 cut(s) 249, 471, 575, 661, 744
Sau3AI GATC 2 cut(s) 160, 622
Sau96I GGNCC 1 cut(s) 872
SchI GAGTC 3 cut(s) 184, 304, 452
ScrFI CCNGG 3 cut(s) 53, 388, 480
SduI GDGCHC 2 cut(s) 201, 919
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 1 cut(s) 872
SmiMI CAYNNNNRTG 2 cut(s) 709, 771
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 6 cut(s) 69, 109, 268, 555, 596, 644
SsiI CCGC 2 cut(s) 660, 876
SspMI CTAG 2 cut(s) 566, 755
StyD4I CCNGG 3 cut(s) 51, 386, 478
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 2 cut(s) 79, 784
TasI AATT 6 cut(s) 69, 109, 268, 555, 596, 644
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 6 cut(s) 13, 263, 279, 357, 689, 824
Tru1I TTAA 4 cut(s) 365, 375, 513, 930
Tru9I TTAA 4 cut(s) 365, 375, 513, 930
TscAI CASTG 4 cut(s) 67, 84, 318, 912
TseFI GTSAC 2 cut(s) 169, 533
TseI GCWGC 4 cut(s) 248, 470, 574, 743
Tsp45I GTSAC 2 cut(s) 169, 533
TspDTI ATGAA 4 cut(s) 180, 384, 699, 740
TspRI CASTG 4 cut(s) 67, 84, 318, 912
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 2 cut(s) 555, 644
XceI RCATGY 2 cut(s) 493, 896
XmaJI CCTAGG 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 688
XspI CTAG 2 cut(s) 566, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.