Rh1AG342500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
57820068 .. 57821317
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG342500.1

Sequence Viewer

Length: 666 bp
ATGCCGGACTTCATTATTGTTGGAACAGGGGGTTCTTACTCTCAATCACTGTCATGGACGCTTCGTATGAAGATTGCCTTTGGTGCTGCTAAGGTGCTAGCATTTCTTCACAGTGGTGAGGTAAAAGTGATCCATCGGAACATAAAAAGTTCGAAGATCCTGCTGGATTCAACCTACAATGCGAAACTCTGTAGTTTTTGTCTGGCCAAGGATGGGCCAGAAGGTGATAGAAGTCATATCTCAACTAGGGTCATGGGGACATCTGGACATGCAGCTCCTGAATATGTGGCCACAGGTCATTTGACTGCCAAATGTGATGTATATGCGTTTGGAGTTGTTATGCTCGAAATGTTGTCTGGAAAACGAGCTATGGACAAGAACTCGCCAACTGGGGAATCCAATTTGGTTGAGTGGAGTCAATGGACCAATTCTGACATTGTCAGCAAACACAAAGTTCTCCAAATTATCGATGCTCGTGTTGAAGGACAGTACTCTGTTGCTACAGCTCTTAAAGCAGCTGACCTTGCATTTTGCTGCCTATCAACAGATCCCAAGCTTAGGCCAAACATGAATGATGTGGTAAAAGTTTTGGAGGAGCTTCAGGAATCTGGTGACATGTCTCATAACGAACCTCGCCACAATCCTCATGCCAGTTCAAGTAACTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

221

Amino Acids

24.07

Weight (kDa)

7.11

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 15 - 197 9.7e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 25 - 195 8e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 124, 151, 542
AcoI YGGCCR 2 cut(s) 204, 288
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 2 cut(s) 213, 558
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 3 cut(s) 171, 482, 657
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 6 cut(s) 275, 368, 506, 518, 556, 598
AluI AGCT 6 cut(s) 275, 368, 506, 518, 556, 598
Alw26I GTCTC 1 cut(s) 624
AlwI GGATC 3 cut(s) 124, 151, 542
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 4 cut(s) 204, 215, 288, 560
ApeKI GCWGC 4 cut(s) 86, 272, 515, 534
AspS9I GGNCC 2 cut(s) 215, 423
AsuHPI GGTGA 3 cut(s) 128, 236, 623
AsuII TTCGAA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 423
BalI TGGCCA 2 cut(s) 206, 290
BauI CACGAG 1 cut(s) 474
BbvI GCAGC 4 cut(s) 73, 284, 521, 527
BccI CCATC 2 cut(s) 141, 206
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 2 cut(s) 98, 246
BfmI CTRYAG 2 cut(s) 190, 501
BisI GCNGC 4 cut(s) 87, 273, 516, 535
BlsI GCNGC 4 cut(s) 88, 274, 517, 536
BmcAI AGTACT 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 215, 423
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 460
BmtI GCTAGC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 399
Bpu10I CCTNAGC 2 cut(s) 90, 557
Bpu14I TTCGAA 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 558
Bse1I ACTGG 2 cut(s) 394, 651
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 213, 558
BseNI ACTGG 2 cut(s) 394, 651
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 4 cut(s) 73, 284, 521, 527
BshFI GGCC 4 cut(s) 206, 217, 290, 562
BshVI ATCGAT 1 cut(s) 468
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 213, 558
BsmAI GTCTC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 4 cut(s) 206, 217, 290, 562
Bsp119I TTCGAA 1 cut(s) 152
Bsp143I GATC 3 cut(s) 129, 156, 547
BspANI GGCC 4 cut(s) 206, 217, 290, 562
BspDI ATCGAT 1 cut(s) 468
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 3 cut(s) 124, 151, 542
BspT104I TTCGAA 1 cut(s) 152
BsrI ACTGG 2 cut(s) 394, 651
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 129, 156, 547
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 51, 113, 489
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 90, 557
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 3 cut(s) 132, 159, 550
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 3 cut(s) 129, 156, 547
BstMWI GCNNNNNNNGC 3 cut(s) 83, 512, 524
BstNSI RCATGY 2 cut(s) 272, 619
BstSFI CTRYAG 2 cut(s) 190, 501
BstV1I GCAGC 4 cut(s) 73, 284, 521, 527
BstX2I RGATCY 2 cut(s) 156, 547
BstYI RGATCY 2 cut(s) 156, 547
Bsu15I ATCGAT 1 cut(s) 468
BsuRI GGCC 4 cut(s) 206, 217, 290, 562
BsuTUI ATCGAT 1 cut(s) 468
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 47, 118
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 215, 423
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 490
CviAII CATG 6 cut(s) 54, 253, 269, 568, 616, 647
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 90, 557
DpnI GATC 3 cut(s) 131, 158, 549
DpnII GATC 3 cut(s) 129, 156, 547
EaeI YGGCCR 2 cut(s) 204, 288
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 6 cut(s) 57, 256, 272, 571, 619, 650
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 271
FatI CATG 6 cut(s) 53, 252, 268, 567, 615, 646
Fnu4HI GCNGC 4 cut(s) 87, 273, 516, 535
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 4 cut(s) 87, 273, 516, 535
FspBI CTAG 2 cut(s) 98, 246
GluI GCNGC 4 cut(s) 87, 273, 516, 535
HaeIII GGCC 4 cut(s) 206, 217, 290, 562
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 67
Hin1II CATG 6 cut(s) 57, 256, 272, 571, 619, 650
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 4 cut(s) 167, 395, 415, 605
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 128, 236, 623
Hpy188I TCNGA 2 cut(s) 138, 433
Hpy188III TCNNGA 4 cut(s) 264, 278, 357, 602
HpyAV CCTTC 2 cut(s) 215, 476
HpyCH4III ACNGT 3 cut(s) 51, 113, 489
HpyCH4V TGCA 2 cut(s) 272, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 512, 524
HpyF3I CTNAG 2 cut(s) 90, 557
Hsp92II CATG 6 cut(s) 57, 256, 272, 571, 619, 650
Kzo9I GATC 3 cut(s) 129, 156, 547
LmnI GCTCC 2 cut(s) 280, 595
Lsp1109I GCAGC 4 cut(s) 73, 284, 521, 527
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 98, 246
MaeIII GTNAC 2 cut(s) 611, 659
MalI GATC 3 cut(s) 131, 158, 549
MboI GATC 3 cut(s) 129, 156, 547
MboII GAAGA 3 cut(s) 82, 98, 166
MflI RGATCY 2 cut(s) 156, 547
MlsI TGGCCA 2 cut(s) 206, 290
MluCI AATT 3 cut(s) 400, 427, 462
MluNI TGGCCA 2 cut(s) 206, 290
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 4 cut(s) 112, 586, 642, 654
Mox20I TGGCCA 2 cut(s) 206, 290
MscI TGGCCA 2 cut(s) 206, 290
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 2 cut(s) 52, 114
Msp20I TGGCCA 2 cut(s) 206, 290
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 83, 512, 524
NdeII GATC 3 cut(s) 129, 156, 547
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 6 cut(s) 57, 256, 272, 571, 619, 650
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 2 cut(s) 272, 619
NspV TTCGAA 1 cut(s) 152
OliI CACNNNNGTG 1 cut(s) 114
PciI ACATGT 1 cut(s) 615
PfeI GAWTC 3 cut(s) 167, 395, 605
PflFI GACNNNGTC 1 cut(s) 437
PkrI GCNGC 4 cut(s) 88, 274, 517, 536
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PscI ACATGT 1 cut(s) 615
PspPI GGNCC 2 cut(s) 215, 423
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 156, 547
PsyI GACNNNGTC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 2 cut(s) 52, 114
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 87, 273, 516, 535
Sau3AI GATC 3 cut(s) 129, 156, 547
Sau96I GGNCC 2 cut(s) 215, 423
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 1 cut(s) 424
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 190, 501
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 52, 114
Sse9I AATT 3 cut(s) 400, 427, 462
SspMI CTAG 2 cut(s) 98, 246
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 51, 113, 489
TaqI TCGA 3 cut(s) 152, 345, 468
TasI AATT 3 cut(s) 400, 427, 462
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 3 cut(s) 167, 395, 605
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 2 cut(s) 54, 118
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 4 cut(s) 86, 272, 515, 534
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 2 cut(s) 83, 584
TspRI CASTG 2 cut(s) 54, 118
Tth111I GACNNNGTC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 423
XceI RCATGY 2 cut(s) 272, 619
XspI CTAG 2 cut(s) 98, 246
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.