RchiOBHm_Chr1g0367581
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000305
Physical Location & Seq
Forward (+)
57937932 .. 57939975
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59202

Sequence Viewer

Length: 789 bp
ATGGCGACCTGGAACTTCCATCCTGATAATATGGTGGGCGAAGGTGGTTTTGGTTCTGTTTTCAAGGGGTGGGTTGATGACTCATCAACAGCTGCCAACCCTGGTAAGGGCATGTTGATTGCTGTGAAGAGGATTAACAAAGAAGGTTTCTTGGGTCACGAGCTATGGTTGACAGAAATTTACTACCTAGGAAGGCTGCGTCATCCAAATCTTGTGAAATTGTTGGGTTATTGCTTTGAAGATGATCATCGGCTTCTGGTGTTTGAATTTATGTCTCGTGGCTCAAACATATCCACTTGCCATTTTGTGAAACGGGAGGGGAACAAGGTTGCTCACCGGTTAGCAAAAGAGGCTTTAAAAATTAGTCAACCGTTCCTTTGTTTGGAGTCGGGGCCTATTTGGCTCCATCAGTCTGTCAGAGCCGGATCCCTGGACAAAAGCCTTTCGACTGTGCAACAGAATTTAGTTGACTTGGCCAAACCTTACCTCGCCAGCAAACGCAGAGTTCTCAAAGTTTTTGATCCTCGTTTAAAAGGCCAGTACTCTGTGGCTGGAGCTCTTAAAGCAGCTAATCTTGCAAAACAATGCTTATCAGAAGAACCTGAGTTTAGGCCAAACATGACTGAGATGGTAAAAGCATTGGAGCAGCTTCAGGAACCTGAAGACATGAAGGGTTTGAAGATTCCTCAAAATGAGCCTTGCCAGAGTCTTCGTGCCAATTCAAACAATCGCAGGAGAAGCACAAGTTGGATCAGCTTCATGCCATCTGCTTCCCGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

29.59

Weight (kDa)

9.43

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 7 - 106 8.5e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 123 1.7e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 775
AclWI GGATC 4 cut(s) 420, 433, 515, 758
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 3 cut(s) 177, 266, 460
AcuI CTGAAG 2 cut(s) 635, 681
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 106, 107, 382
AgeI ACCGGT 1 cut(s) 336
AgsI TTSAA 5 cut(s) 64, 239, 266, 679, 723
AjnI CCWGG 3 cut(s) 8, 100, 429
AjuI GAANNNNNNNTTGG 4 cut(s) 33, 65, 730, 762
AluBI AGCT 7 cut(s) 92, 163, 557, 569, 649, 756, 780
AluI AGCT 7 cut(s) 92, 163, 557, 569, 649, 756, 780
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 4 cut(s) 420, 433, 515, 758
AoxI GGCC 4 cut(s) 392, 474, 535, 611
ApeKI GCWGC 5 cut(s) 92, 196, 566, 646, 777
ApoI RAATTY 3 cut(s) 177, 266, 460
AsiGI ACCGGT 1 cut(s) 336
AspA2I CCTAGG 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 326
AvrII CCTAGG 1 cut(s) 187
BalI TGGCCA 1 cut(s) 476
BamHI GGATCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 559
BauI CACGAG 2 cut(s) 158, 276
BbsI GAAGAC 2 cut(s) 669, 701
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 4 cut(s) 79, 183, 578, 658
BccI CCATC 4 cut(s) 27, 414, 622, 772
BciT130I CCWGG 3 cut(s) 10, 102, 431
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 188
BglI GCCNNNNNGGC 1 cut(s) 400
BisI GCNGC 5 cut(s) 93, 197, 567, 647, 778
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 5 cut(s) 94, 198, 568, 648, 779
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 3 cut(s) 10, 102, 431
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 4 cut(s) 393, 404, 427, 657
BmrFI CCNGG 3 cut(s) 10, 102, 431
BpiI GAAGAC 2 cut(s) 669, 701
BpmI CTGGAG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 100, 187, 429
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 107, 382
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 3 cut(s) 10, 102, 431
BseDI CCNNGG 3 cut(s) 100, 187, 429
BseGI GGATG 2 cut(s) 19, 202
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 3 cut(s) 106, 107, 382
BseMII CTCAG 2 cut(s) 594, 615
BseNI ACTGG 1 cut(s) 538
BseXI GCAGC 4 cut(s) 79, 183, 578, 658
BshFI GGCC 4 cut(s) 394, 476, 537, 613
BshTI ACCGGT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 559
BsiSI CCGG 2 cut(s) 337, 423
BslI CCNNNNNNNGG 3 cut(s) 106, 107, 382
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 4 cut(s) 394, 476, 537, 613
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 4 cut(s) 244, 425, 520, 750
BspACI CCGC 1 cut(s) 775
BspANI GGCC 4 cut(s) 394, 476, 537, 613
BspCNI CTCAG 2 cut(s) 595, 616
BspLI GGNNCC 4 cut(s) 393, 404, 427, 657
BspPI GGATC 4 cut(s) 420, 433, 515, 758
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 1 cut(s) 538
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 100, 187, 429
BssMI GATC 4 cut(s) 244, 425, 520, 750
BssSI CACGAG 2 cut(s) 158, 276
BssT1I CCWWGG 1 cut(s) 187
Bst2BI CACGAG 2 cut(s) 158, 276
Bst2UI CCWGG 3 cut(s) 10, 102, 431
Bst4CI ACNGT 2 cut(s) 372, 451
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 2 cut(s) 603, 624
BstF5I GGATG 2 cut(s) 19, 202
BstKTI GATC 4 cut(s) 247, 428, 523, 753
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 4 cut(s) 244, 425, 520, 750
BstMWI GCNNNNNNNGC 5 cut(s) 350, 400, 563, 575, 738
BstNI CCWGG 3 cut(s) 10, 102, 431
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 8, 100, 429
BstV1I GCAGC 4 cut(s) 79, 183, 578, 658
BstV2I GAAGAC 2 cut(s) 669, 701
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 4 cut(s) 394, 476, 537, 613
BtsCI GGATG 2 cut(s) 19, 202
Cac8I GCNNGC 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 541
CspAI ACCGGT 1 cut(s) 336
CviAII CATG 4 cut(s) 112, 619, 667, 760
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 603, 624
DpnI GATC 4 cut(s) 246, 427, 522, 752
DpnII GATC 4 cut(s) 244, 425, 520, 750
DraI TTTAAA 2 cut(s) 357, 531
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 557
Eco57I CTGAAG 2 cut(s) 635, 681
EcoICRI GAGCTC 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 8, 100, 429
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 4 cut(s) 115, 622, 670, 763
FatI CATG 4 cut(s) 111, 618, 666, 759
FauI CCCGC 1 cut(s) 782
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 93, 197, 567, 647, 778
FokI GGATG 2 cut(s) 6, 189
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 5 cut(s) 93, 197, 567, 647, 778
FspBI CTAG 1 cut(s) 188
GluI GCNGC 5 cut(s) 93, 197, 567, 647, 778
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 4 cut(s) 394, 476, 537, 613
HapII CCGG 2 cut(s) 337, 423
HgaI GACGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 115, 622, 670, 763
HincII GTYRAC 3 cut(s) 171, 368, 469
HindII GTYRAC 3 cut(s) 171, 368, 469
HinfI GANTC 4 cut(s) 80, 386, 682, 706
HpaII CCGG 2 cut(s) 337, 423
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 3 cut(s) 171, 368, 469
Hpy188I TCNGA 2 cut(s) 419, 595
Hpy188III TCNNGA 3 cut(s) 23, 158, 653
Hpy8I GTNNAC 3 cut(s) 171, 368, 469
HpyAV CCTTC 4 cut(s) 35, 137, 186, 664
HpyCH4III ACNGT 2 cut(s) 372, 451
HpyCH4V TGCA 2 cut(s) 454, 578
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 400, 563, 575, 738
HpyF3I CTNAG 2 cut(s) 603, 624
Hsp92II CATG 4 cut(s) 115, 622, 670, 763
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 244, 425, 520, 750
LmnI GCTCC 3 cut(s) 408, 554, 643
Lsp1109I GCAGC 4 cut(s) 79, 183, 578, 658
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 155
MalI GATC 4 cut(s) 246, 427, 522, 752
MboI GATC 4 cut(s) 244, 425, 520, 750
MboII GAAGA 6 cut(s) 139, 251, 608, 674, 691, 701
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 1 cut(s) 559
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 6 cut(s) 177, 218, 266, 360, 460, 718
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 3 cut(s) 74, 395, 715
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 6 cut(s) 123, 310, 343, 497, 534, 696
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 4 cut(s) 135, 356, 530, 561
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 2 cut(s) 337, 423
MspR9I CCNGG 3 cut(s) 10, 102, 431
MvaI CCWGG 3 cut(s) 10, 102, 431
MwoI GCNNNNNNNGC 5 cut(s) 350, 400, 563, 575, 738
NdeII GATC 4 cut(s) 244, 425, 520, 750
NlaIII CATG 4 cut(s) 115, 622, 670, 763
NlaIV GGNNCC 4 cut(s) 393, 404, 427, 657
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 115
PfeI GAWTC 1 cut(s) 682
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 5 cut(s) 94, 198, 568, 648, 779
PleI GAGTC 3 cut(s) 74, 394, 714
PpsI GAGTC 3 cut(s) 74, 394, 714
Psp124BI GAGCTC 1 cut(s) 559
Psp6I CCWGG 3 cut(s) 8, 100, 429
PspGI CCWGG 3 cut(s) 8, 100, 429
PspN4I GGNNCC 4 cut(s) 393, 404, 427, 657
PspPI GGNCC 1 cut(s) 392
PsuI RGATCY 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SacI GAGCTC 1 cut(s) 559
SaqAI TTAA 4 cut(s) 135, 356, 530, 561
SatI GCNGC 5 cut(s) 93, 197, 567, 647, 778
Sau3AI GATC 4 cut(s) 244, 425, 520, 750
Sau96I GGNCC 1 cut(s) 392
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 3 cut(s) 74, 395, 715
ScrFI CCNGG 3 cut(s) 10, 102, 431
SduI GDGCHC 1 cut(s) 559
Sse9I AATT 6 cut(s) 177, 218, 266, 360, 460, 718
SsiI CCGC 1 cut(s) 775
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 559
StyD4I CCNGG 3 cut(s) 8, 100, 429
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 372, 451
TaqI TCGA 1 cut(s) 446
TasI AATT 6 cut(s) 177, 218, 266, 360, 460, 718
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 682
Tru1I TTAA 4 cut(s) 135, 356, 530, 561
Tru9I TTAA 4 cut(s) 135, 356, 530, 561
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 5 cut(s) 92, 196, 566, 646, 777
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 683, 748
XapI RAATTY 3 cut(s) 177, 266, 460
XceI RCATGY 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 187
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.