Rorug01G0335800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000305
Physical Location & Seq
Forward (+)
45429015 .. 45435012
5998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0335800.1

Sequence Viewer

Length: 1644 bp
ATGAAGAACTCGGTGTCGGATCGCAGTTTTTACATTGACAGTGAAGAAGAAGATGATGAGGAGAAGGACAACAAAAGCATAGAAGACGCGAATGATTCTGATTCTTCGGGTTCGGAAGCCGAGCACCGCCGGCAGCAGCAGATTCAGCCCAGTTCTTACAATACCCAATGGCCTCAGAGTTACAGGCAATCCATTGACCTGTATAGTAGTGTGCCATCCCCTGGAATTGGGTTTCTAGGCACTCCTTCACTGTCAAGATTAGGAAGCTCGTTTCTTTCCTCATCACTAACGAGAAGGCACACTCCCGAAACATTACCTTTTTTGGCAAAACCTACGGTACCAACCCTTGCTGAGCAACAACAGCAGAGACGAAGTTCTCATTCTCTACTTCCACCAATTTCTTCAAGGAGGTCTTCAGTAAAAAAAGATGATAAATCCAGGATTTCTCATGAACATCATCCAATGCCTCGCCACAGCTCATTCGCGCAAGCTGTGGTTAATGGAATCAATGTTCTTTGTGGAGTGGGAATTCTATCGACACCATATGCACTCAAAGAAGGAGGATGGATCGGGCTTTCCATTTTGTTTATTTTTGCAGTGCTGTCGTTCTACACTGGATTGCTTCTGCGTTACTGCTTGGATAGTCAACCTGGGCTTGAGACTTACCCAGACATTGGCCAAGCTGCATTTGGTAAACCTGGCCGAATTGCTATCTCGATAGTACTGTACGTTGAATTATATGCTTGTTGCATAGAATATATAATCTTGGAGGGTGACAACTTGTCTTCGCTATTCCCAAATGCACACCTGAACTTGGGTGGATTTGAGTTAAATGCACACGTTTTGTTTGCAATTTTGACCGCCCTTGCTGTTCTACCTACTGTTTGGCTTCGAGACCTCAGTGTTCTTAGCTATATCTCAGCTGGTGGAGTTATTGCGTCGATCTTGGTAGTGCTTTGCTTGTTTTGGGTTGGTCTAGTAGATGGTGTTGGCTTTGAGAGCAAAGGGACTCCACTGAACCTTGCAACTCTTCCTGTTGCTATGGGTCTCTATGGTTACTGCTACTCAGGACACGCTGTATTCCCAAACATTTATACTTCATTGGAAAAACCAAACCAATACCCTGCAATTCTCTTAACATGCTTTTGCATATGTACTTTCATGTATGCTGGAGTTGCTGTCATGGGTTACACAATGTTTGGAGAAGCAACACTGTCACAGTTCACTCTCAACATGCCTCACAATTTGGTTGCCTCAAAGATCGCTGTGTGGACTACGGTAGTCAACCCATTTACCAAATATGCATTAACTATATCTCCCGTGGCAATGAGTCTGGAGGAGCTGGTACCATCAGACAAATCTCGCACGTACTCTATCTTTATTAGAACAGGGCTGGTGCTCTCTACCCTGGTGGTCGGTCTTTGTTTACCTTTCTTTGGTCTCATGATGTCATTGATCGGATCTTTATTCACAATGCTTGTAGCCTTGATACTTCCTTGTGCTTGTTATCTGAGTATCCTCAAGGGACGAGTAACTCGTTTTCAGATGATACTTTGTATTATAATTATTACAGTAGGTGTCGTAGCATCTGGTTTCGGAACATATTCAGCTGTAACTAAAATCGTAGAGAATTTGAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

547

Amino Acids

59.73

Weight (kDa)

6.27

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 158 - 537 2.7e-68 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1562
Acc65I GGTACC 2 cut(s) 337, 1345
AccB1I GGYRCC 2 cut(s) 337, 1345
AccB7I CCANNNNNTGG 2 cut(s) 221, 674
AccII CGCG 2 cut(s) 89, 485
AciI CCGC 2 cut(s) 127, 861
AclWI GGATC 3 cut(s) 27, 575, 1468
AcoI YGGCCR 2 cut(s) 676, 700
AcsI RAATTY 2 cut(s) 528, 1630
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 6 cut(s) 339, 723, 728, 1156, 1347, 1370
AfiI CCNNNNNNNGG 5 cut(s) 221, 227, 674, 814, 1436
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 2 cut(s) 405, 734
AhdI GACNNNNNGTC 1 cut(s) 781
AjnI CCWGG 5 cut(s) 220, 437, 649, 697, 1407
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 9 cut(s) 267, 477, 491, 683, 912, 923, 1342, 1610, 1641
AluI AGCT 9 cut(s) 267, 477, 491, 683, 912, 923, 1342, 1610, 1641
Alw21I GWGCWC 2 cut(s) 126, 1401
Alw26I GTCTC 5 cut(s) 361, 653, 888, 1052, 1445
AlwI GGATC 3 cut(s) 27, 575, 1468
AoxI GGCC 3 cut(s) 170, 676, 700
ApeKI GCWGC 4 cut(s) 133, 136, 683, 1638
ApoI RAATTY 2 cut(s) 528, 1630
Asp700I GAANNNNTTC 1 cut(s) 1603
Asp718I GGTACC 2 cut(s) 337, 1345
AspLEI GCGC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 785
BalI TGGCCA 1 cut(s) 678
BanI GGYRCC 2 cut(s) 337, 1345
BbsI GAAGAC 3 cut(s) 90, 405, 777
Bbv12I GWGCWC 2 cut(s) 126, 1401
BbvI GCAGC 3 cut(s) 145, 148, 670
BccI CCATC 4 cut(s) 223, 558, 977, 1357
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 5 cut(s) 222, 439, 651, 699, 1409
BciVI GTATCC 1 cut(s) 1526
BcoDI GTCTC 5 cut(s) 361, 653, 888, 1052, 1445
BfaI CTAG 2 cut(s) 236, 977
BfuI GTATCC 1 cut(s) 1526
BisI GCNGC 4 cut(s) 134, 137, 684, 1639
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 4 cut(s) 135, 138, 685, 1640
BmcAI AGTACT 1 cut(s) 723
Bme1390I CCNGG 5 cut(s) 222, 439, 651, 699, 1409
BmeRI GACNNNNNGTC 1 cut(s) 781
BmiI GGNNCC 2 cut(s) 339, 1347
BmrFI CCNGG 5 cut(s) 222, 439, 651, 699, 1409
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 1595
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 3 cut(s) 90, 405, 777
BpmI CTGGAG 2 cut(s) 1191, 1355
Bpu1102I GCTNAGC 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 677, 1505
BsaAI YACGTR 1 cut(s) 1368
BsaI GGTCTC 3 cut(s) 888, 1052, 1445
BsaJI CCNNGG 4 cut(s) 220, 650, 1320, 1407
BsaXI ACNNNNNCTCC 4 cut(s) 1164, 1194, 1300, 1330
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 227, 674, 814, 1436
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 150, 619
Bse3DI GCAATG 1 cut(s) 1332
BseBI CCWGG 5 cut(s) 222, 439, 651, 699, 1409
BseDI CCNNGG 4 cut(s) 220, 650, 1320, 1407
BseGI GGATG 3 cut(s) 215, 457, 569
BseLI CCNNNNNNNGG 5 cut(s) 221, 227, 674, 814, 1436
BseMI GCAATG 1 cut(s) 1332
BseMII CTCAG 6 cut(s) 188, 342, 913, 933, 1080, 1502
BseNI ACTGG 2 cut(s) 150, 619
BseRI GAGGAG 2 cut(s) 74, 1352
BseXI GCAGC 3 cut(s) 145, 148, 670
Bsh1236I CGCG 2 cut(s) 89, 485
BshFI GGCC 3 cut(s) 172, 678, 702
BshNI GGYRCC 2 cut(s) 337, 1345
BsiHKAI GWGCWC 2 cut(s) 126, 1401
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 2 cut(s) 1021, 1539
BslI CCNNNNNNNGG 5 cut(s) 221, 227, 674, 814, 1436
BsmAI GTCTC 5 cut(s) 361, 653, 888, 1052, 1445
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 1021, 1539
BsnI GGCC 3 cut(s) 172, 678, 702
Bso31I GGTCTC 3 cut(s) 888, 1052, 1445
Bsp1286I GDGCHC 2 cut(s) 126, 1401
Bsp143I GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 127, 861
BspANI GGCC 3 cut(s) 172, 678, 702
BspCNI CTCAG 6 cut(s) 187, 343, 912, 932, 1079, 1503
BspFNI CGCG 2 cut(s) 89, 485
BspHI TCATGA 2 cut(s) 448, 1443
BspLI GGNNCC 2 cut(s) 339, 1347
BspPI GGATC 3 cut(s) 27, 575, 1468
BspT107I GGYRCC 2 cut(s) 337, 1345
BspTNI GGTCTC 3 cut(s) 888, 1052, 1445
BsrDI GCAATG 1 cut(s) 1332
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 2 cut(s) 150, 619
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 4 cut(s) 220, 650, 1320, 1407
BssMI GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
Bst2UI CCWGG 5 cut(s) 222, 439, 651, 699, 1409
Bst4CI ACNGT 9 cut(s) 41, 252, 337, 726, 883, 1215, 1221, 1279, 1573
Bst6I CTCTTC 1 cut(s) 1035
BstBAI YACGTR 1 cut(s) 1368
BstC8I GCNNGC 2 cut(s) 131, 489
BstDEI CTNAG 7 cut(s) 174, 351, 899, 908, 919, 1066, 1511
BstDSI CCRYGG 1 cut(s) 1320
BstF5I GGATG 3 cut(s) 215, 457, 569
BstFNI CGCG 2 cut(s) 89, 485
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 6 cut(s) 22, 570, 945, 1263, 1458, 1463
BstMAI GTCTC 5 cut(s) 361, 653, 888, 1052, 1445
BstMBI GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
BstMWI GCNNNNNNNGC 5 cut(s) 130, 145, 361, 999, 1175
BstNI CCWGG 5 cut(s) 222, 439, 651, 699, 1409
BstNSI RCATGY 2 cut(s) 1143, 1237
BstSCI CCNGG 5 cut(s) 220, 437, 649, 697, 1407
BstUI CGCG 2 cut(s) 89, 485
BstV1I GCAGC 3 cut(s) 145, 148, 670
BstV2I GAAGAC 3 cut(s) 90, 405, 777
BstX2I RGATCY 1 cut(s) 1460
BstYI RGATCY 1 cut(s) 1460
BsuI GTATCC 1 cut(s) 1526
BsuRI GGCC 3 cut(s) 172, 678, 702
BtgI CCRYGG 1 cut(s) 1320
BtsCI GGATG 3 cut(s) 215, 457, 569
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 7 cut(s) 46, 248, 603, 612, 907, 1013, 1211
Cac8I GCNNGC 2 cut(s) 131, 489
CciI TCATGA 2 cut(s) 448, 1443
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 129
CseI GACGC 2 cut(s) 95, 927
Csp6I GTAC 6 cut(s) 338, 722, 727, 1155, 1346, 1369
CviAII CATG 6 cut(s) 449, 1140, 1162, 1183, 1234, 1444
CviQI GTAC 6 cut(s) 338, 722, 727, 1155, 1346, 1369
DdeI CTNAG 7 cut(s) 174, 351, 899, 908, 919, 1066, 1511
DpnI GATC 6 cut(s) 21, 569, 944, 1262, 1457, 1462
DpnII GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
DriI GACNNNNNGTC 1 cut(s) 781
EaeI YGGCCR 2 cut(s) 676, 700
Eam1104I CTCTTC 1 cut(s) 1035
Eam1105I GACNNNNNGTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 1035
Eco31I GGTCTC 3 cut(s) 888, 1052, 1445
Eco57I CTGAAG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 528
EcoRII CCWGG 5 cut(s) 220, 437, 649, 697, 1407
EcoT22I ATGCAT 1 cut(s) 1306
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 6 cut(s) 452, 1143, 1165, 1186, 1237, 1447
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 2 cut(s) 1021, 1539
FatI CATG 6 cut(s) 448, 1139, 1161, 1182, 1233, 1443
FauNDI CATATG 2 cut(s) 544, 1151
Fnu4HI GCNGC 4 cut(s) 134, 137, 684, 1639
FokI GGATG 3 cut(s) 202, 444, 576
Fsp4HI GCNGC 4 cut(s) 134, 137, 684, 1639
FspBI CTAG 2 cut(s) 236, 977
GlaI GCGC 1 cut(s) 486
GluI GCNGC 4 cut(s) 134, 137, 684, 1639
GsuI CTGGAG 2 cut(s) 1191, 1355
HaeIII GGCC 3 cut(s) 172, 678, 702
HapII CCGG 1 cut(s) 130
HgaI GACGC 2 cut(s) 95, 927
HhaI GCGC 1 cut(s) 487
Hin1II CATG 6 cut(s) 452, 1143, 1165, 1186, 1237, 1447
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HincII GTYRAC 2 cut(s) 647, 1285
HindII GTYRAC 2 cut(s) 647, 1285
HinfI GANTC 6 cut(s) 95, 101, 142, 504, 1009, 1330
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 785
Hpy166II GTNNAC 6 cut(s) 647, 695, 1224, 1272, 1285, 1427
Hpy188I TCNGA 9 cut(s) 19, 100, 115, 177, 1354, 1460, 1512, 1545, 1598
Hpy188III TCNNGA 8 cut(s) 255, 305, 449, 715, 893, 1068, 1334, 1444
Hpy8I GTNNAC 6 cut(s) 647, 695, 1224, 1272, 1285, 1427
Hpy99I CGWCG 1 cut(s) 943
HpyAV CCTTC 4 cut(s) 58, 255, 288, 551
HpyCH4III ACNGT 9 cut(s) 41, 252, 337, 726, 883, 1215, 1221, 1279, 1573
HpyCH4IV ACGT 3 cut(s) 729, 840, 1367
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 145, 361, 999, 1175
HpyF3I CTNAG 7 cut(s) 174, 351, 899, 908, 919, 1066, 1511
HpySE526I ACGT 3 cut(s) 729, 840, 1367
Hsp92II CATG 6 cut(s) 452, 1143, 1165, 1186, 1237, 1447
HspAI GCGC 1 cut(s) 485
KpnI GGTACC 2 cut(s) 341, 1349
KroI GCCGGC 1 cut(s) 129
KroNI GCCGGC 1 cut(s) 131
Kzo9I GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
LmnI GCTCC 1 cut(s) 1339
Lsp1109I GCAGC 3 cut(s) 145, 148, 670
LweI GCATC 1 cut(s) 1595
MaeI CTAG 2 cut(s) 236, 977
MaeII ACGT 3 cut(s) 729, 840, 1367
MaeIII GTNAC 8 cut(s) 179, 629, 773, 1055, 1187, 1215, 1531, 1612
MalI GATC 6 cut(s) 21, 569, 944, 1262, 1457, 1462
MboI GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
MflI RGATCY 1 cut(s) 1460
MhlI GDGCHC 2 cut(s) 126, 1401
MlsI TGGCCA 1 cut(s) 678
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 2 cut(s) 1003, 1339
Mox20I TGGCCA 1 cut(s) 678
Mph1103I ATGCAT 1 cut(s) 1306
MroNI GCCGGC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 1603
MscI TGGCCA 1 cut(s) 678
MseI TTAA 4 cut(s) 498, 830, 1136, 1307
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 3 cut(s) 923, 1610, 1641
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 5 cut(s) 222, 439, 651, 699, 1409
MvaI CCWGG 5 cut(s) 222, 439, 651, 699, 1409
MvnI CGCG 2 cut(s) 89, 485
MwoI GCNNNNNNNGC 5 cut(s) 130, 145, 361, 999, 1175
NaeI GCCGGC 1 cut(s) 131
NdeI CATATG 2 cut(s) 544, 1151
NdeII GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
NgoMIV GCCGGC 1 cut(s) 129
NlaIII CATG 6 cut(s) 452, 1143, 1165, 1186, 1237, 1447
NlaIV GGNNCC 2 cut(s) 339, 1347
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 773, 1215
NsiI ATGCAT 1 cut(s) 1306
NspI RCATGY 2 cut(s) 1143, 1237
PagI TCATGA 2 cut(s) 448, 1443
PcsI WCGNNNNNNNCGW 1 cut(s) 1534
PdiI GCCGGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 1603
PfeI GAWTC 4 cut(s) 95, 101, 142, 504
PflMI CCANNNNNTGG 2 cut(s) 221, 674
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 4 cut(s) 135, 138, 685, 1640
PleI GAGTC 2 cut(s) 1003, 1338
PpsI GAGTC 2 cut(s) 1003, 1338
Ppu21I YACGTR 1 cut(s) 1368
PsiI TTATAA 1 cut(s) 1562
Psp6I CCWGG 5 cut(s) 220, 437, 649, 697, 1407
PspGI CCWGG 5 cut(s) 220, 437, 649, 697, 1407
PspN4I GGNNCC 2 cut(s) 339, 1347
PsuI RGATCY 1 cut(s) 1460
PvuII CAGCTG 3 cut(s) 923, 1610, 1641
RsaI GTAC 6 cut(s) 339, 723, 728, 1156, 1347, 1370
RsaNI GTAC 6 cut(s) 338, 722, 727, 1155, 1346, 1369
SaqAI TTAA 4 cut(s) 498, 830, 1136, 1307
SatI GCNGC 4 cut(s) 134, 137, 684, 1639
Sau3AI GATC 6 cut(s) 19, 567, 942, 1260, 1455, 1460
ScaI AGTACT 1 cut(s) 723
SchI GAGTC 2 cut(s) 1003, 1339
ScrFI CCNGG 5 cut(s) 222, 439, 651, 699, 1409
SduI GDGCHC 2 cut(s) 126, 1401
SfaNI GCATC 1 cut(s) 1595
SmlI CTYRAG 2 cut(s) 656, 1520
SmoI CTYRAG 2 cut(s) 656, 1520
SsiI CCGC 2 cut(s) 127, 861
SspMI CTAG 2 cut(s) 236, 977
StyD4I CCNGG 5 cut(s) 220, 437, 649, 697, 1407
TaaI ACNGT 9 cut(s) 41, 252, 337, 726, 883, 1215, 1221, 1279, 1573
TaiI ACGT 3 cut(s) 732, 843, 1370
TaqI TCGA 4 cut(s) 536, 716, 892, 941
TaqII GACCGA 1 cut(s) 1406
TatI WGTACW 2 cut(s) 721, 1154
TfiI GAWTC 4 cut(s) 95, 101, 142, 504
Tru1I TTAA 4 cut(s) 498, 830, 1136, 1307
Tru9I TTAA 4 cut(s) 498, 830, 1136, 1307
TscAI CASTG 7 cut(s) 46, 255, 603, 619, 907, 1020, 1218
TseFI GTSAC 2 cut(s) 773, 1215
TseI GCWGC 4 cut(s) 133, 136, 683, 1638
Tsp45I GTSAC 2 cut(s) 773, 1215
TspDTI ATGAA 4 cut(s) 17, 465, 1089, 1150
TspRI CASTG 7 cut(s) 46, 255, 603, 619, 907, 1020, 1218
Van91I CCANNNNNTGG 2 cut(s) 221, 674
XapI RAATTY 2 cut(s) 528, 1630
XceI RCATGY 2 cut(s) 1143, 1237
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 1603
XspI CTAG 2 cut(s) 236, 977
ZrmI AGTACT 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 1306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.