Rw1G030470
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000305
Physical Location & Seq
Forward (+)
58415110 .. 58419800
4691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030470.1

Sequence Viewer

Length: 654 bp
ATGGATTCAACTACAAATGGGCTCAGTATCTGTGATGGTAACATTCCTTGCTTCCCAATTTTGAGCTCTACTGCAAAGAACTTGGCTTCATATGGAACTAGAAGTGCTGAGAGTCTGCCTCAAGCCACAAGGAACTTTCGTCCTGACAGTATGATGGGTGAAGGCGGATTTGGTTGTGTTTTTAAGGGCTGGGTTGATGAGAATGCATTAACCGCTGCCAAGCATGGTACTGGAATGGTTATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTCCAGGGTCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTCCGACACTCAAATCTTGTGAAGCTGATTGGTTATTGCTTGGATGCTTGGAGGATGACCACCGGCTTCTGGTGTATGAATTCATGTCTCGTGGCAGCTTGGACAATCATCTATTTAGAAATTGCTCTTGGTACTGCTGAGGGTCTAGGATTTCTTCACGGTGATGAGGCAAAAGTGATCTATCAGGACTTTAAAACTTTTAATATCCTGTTGGATTCAGCCTGCAATGCCAAACTCTCTGATTTTGGTTTAGCCAAGGATGGACCAGCAGGTGATAAAAGCCACGTCTCAACAAGGGTCATGGGGACATATAGGTCATTTAACCGCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

217

Amino Acids

23.76

Weight (kDa)

7.59

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 49 - 206 6.5e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 50 - 201 2.4e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 578
AasI GACNNNNNNGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 578
AciI CCGC 3 cut(s) 165, 213, 643
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 2 cut(s) 229, 451
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 1 cut(s) 9
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 4 cut(s) 153, 185, 429, 461
AluBI AGCT 4 cut(s) 66, 319, 343, 416
AluI AGCT 4 cut(s) 66, 319, 343, 416
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 3 cut(s) 275, 410, 610
AlwNI CAGNNNCTG 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 215, 413
ApoI RAATTY 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 3 cut(s) 170, 491, 602
AvaII GGWCC 1 cut(s) 581
BanII GRGCYC 2 cut(s) 24, 68
BauI CACGAG 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 202, 425
BccI CCATC 3 cut(s) 29, 148, 572
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 275, 410, 610
BfaI CTAG 2 cut(s) 99, 464
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 2 cut(s) 216, 414
BlsI GCNGC 2 cut(s) 217, 415
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 581
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 581
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 352
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 274, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 550
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 274, 573
BseGI GGATG 3 cut(s) 367, 378, 583
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 3 cut(s) 37, 99, 447
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 202, 425
BseYI CCCAGC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 3 cut(s) 275, 410, 610
BsmBI CGTCTC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 24, 68
Bsp143I GATC 1 cut(s) 495
BspACI CCGC 3 cut(s) 165, 213, 643
BspCNI CTCAG 3 cut(s) 36, 100, 448
BspMI ACCTGC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 274, 573
BssMI GATC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 149, 479
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 3 cut(s) 23, 108, 456
BstF5I GGATG 3 cut(s) 367, 378, 583
BstKTI GATC 1 cut(s) 498
BstMAI GTCTC 3 cut(s) 275, 410, 610
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 2 cut(s) 212, 545
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 202, 425
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 3 cut(s) 367, 378, 583
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 541
CaiI CAGNNNCTG 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 228, 450
CviAII CATG 3 cut(s) 224, 402, 619
CviQI GTAC 2 cut(s) 228, 450
DdeI CTNAG 3 cut(s) 23, 108, 456
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
DraI TTTAAA 1 cut(s) 511
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 24, 68
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 581
Eco53kI GAGCTC 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 24, 68
ErhI CCWWGG 1 cut(s) 573
Esp3I CGTCTC 1 cut(s) 610
FaeI CATG 3 cut(s) 227, 405, 622
FaiI YATR 9 cut(s) 91, 93, 152, 225, 395, 403, 620, 628, 630
FaqI GGGAC 1 cut(s) 637
FatI CATG 3 cut(s) 223, 401, 618
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 216, 414
FokI GGATG 3 cut(s) 374, 385, 590
FriOI GRGCYC 2 cut(s) 24, 68
Fsp4HI GCNGC 2 cut(s) 216, 414
FspBI CTAG 2 cut(s) 99, 464
GluI GCNGC 2 cut(s) 216, 414
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 257
HapII CCGG 1 cut(s) 381
Hin1II CATG 3 cut(s) 227, 405, 622
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 3 cut(s) 5, 112, 533
HpaII CCGG 1 cut(s) 381
HphI GGTGA 3 cut(s) 170, 491, 602
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 323, 559
Hpy188III TCNNGA 2 cut(s) 143, 503
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 2 cut(s) 155, 260
HpyCH4III ACNGT 2 cut(s) 149, 479
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 3 cut(s) 74, 206, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 545
HpyF3I CTNAG 3 cut(s) 23, 108, 456
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 3 cut(s) 227, 405, 622
Kzo9I GATC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 2 cut(s) 202, 425
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 99, 464
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 38, 278
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 2 cut(s) 262, 464
MhlI GDGCHC 2 cut(s) 24, 68
MluCI AATT 3 cut(s) 57, 397, 438
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 346, 510
MnlI CCTC 5 cut(s) 129, 246, 363, 451, 478
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 6 cut(s) 183, 209, 258, 510, 519, 639
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 212, 545
NdeI CATATG 1 cut(s) 91
NdeII GATC 1 cut(s) 495
NlaIII CATG 3 cut(s) 227, 405, 622
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 208
PaqCI CACCTGC 1 cut(s) 578
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 5, 533
PkrI GCNGC 2 cut(s) 217, 415
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 30
RsaI GTAC 2 cut(s) 229, 451
RsaNI GTAC 2 cut(s) 228, 450
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 6 cut(s) 183, 209, 258, 510, 519, 639
SatI GCNGC 2 cut(s) 216, 414
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 24, 68
SetI ASST 8 cut(s) 68, 271, 321, 345, 418, 592, 606, 635
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 57, 397, 438
SsiI CCGC 3 cut(s) 165, 213, 643
SspMI CTAG 2 cut(s) 99, 464
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 149, 479
TaiI ACGT 1 cut(s) 606
TasI AATT 3 cut(s) 57, 397, 438
TfiI GAWTC 2 cut(s) 5, 533
Tru1I TTAA 6 cut(s) 183, 209, 258, 510, 519, 639
Tru9I TTAA 6 cut(s) 183, 209, 258, 510, 519, 639
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 215, 413
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 78, 390, 410
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 1 cut(s) 397
XspI CTAG 2 cut(s) 99, 464
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.