Rmu_sc0009775.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009775.1
OG0000305
Physical Location & Seq
Forward (+)
1 .. 4059
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009775.1_g000001.1.cds

Sequence Viewer

Length: 567 bp
gggtaccttaatgctcaacgagccagtttggcagtagacccagtgcatgaaaatgtgaccatcaacagcaatatcaccaccgcccaagatccagttgaggagatgacaatggattcaactacaaatgggctcagtatctgtgatggtaacattccttgcttcccaattttgagctctactgcaaagaacttggcttcatatggaactagaagtgctgagagtctgcctcaagccacaaggaactttcgtcctgacagtatgatgggtgaaggcggatttggttgtgtttttaagggctgggttgatgagaatgcattaacagctgccaagcatggtactggaatggttgttgctgtgaagaggcttaaccaagaaggtctccagggtcacaaggaatggttgacagaaatcaactatcttggacagctccgacactcaaatcttgtgaagctgattggttattgcttggaggatgaccaccggcttctggtgtatgaattcatgtctcgtggcagcttggacaatcatctatttagaagggcttcttactttcaaccactgtcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

20.77

Weight (kDa)

5.85

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 3
AccB1I GGYRCC 1 cut(s) 3
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 81, 273
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 497
AfaI GTAC 2 cut(s) 5, 337
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 2 cut(s) 117, 554
AjnI CCWGG 1 cut(s) 381
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 5 cut(s) 174, 323, 427, 451, 516
AluI AGCT 5 cut(s) 174, 323, 427, 451, 516
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 383, 510
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 323, 513
ApoI RAATTY 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 541
Asp718I GGTACC 1 cut(s) 3
AsuHPI GGTGA 2 cut(s) 67, 278
BanI GGYRCC 1 cut(s) 3
BanII GRGCYC 2 cut(s) 132, 176
BauI CACGAG 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 310, 525
BccI CCATC 3 cut(s) 68, 137, 256
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 383, 510
BfaI CTAG 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 2 cut(s) 324, 514
BlsI GCNGC 2 cut(s) 325, 515
Bme1390I CCNGG 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 5
BmrFI CCNGG 1 cut(s) 383
BmrI ACTGGG 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 480
Bse1I ACTGG 4 cut(s) 24, 41, 92, 343
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 145, 207
BseNI ACTGG 4 cut(s) 24, 41, 92, 343
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 310, 525
BseYI CCCAGC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 3
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 2 cut(s) 383, 510
BsmI GAATGC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 132, 176
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 2 cut(s) 81, 273
BspCNI CTCAG 2 cut(s) 144, 208
BspLI GGNNCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 3
BspTNI GGTCTC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 480
BsrI ACTGG 4 cut(s) 24, 41, 92, 343
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 2 cut(s) 257, 561
Bst6I CTCTTC 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 131, 216
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 383, 510
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 20, 29, 320
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 310, 525
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 48, 557
CaiI CAGNNNCTG 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 480
Csp6I GTAC 2 cut(s) 4, 336
CviAII CATG 3 cut(s) 47, 332, 502
CviQI GTAC 2 cut(s) 4, 336
DdeI CTNAG 2 cut(s) 131, 216
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 132, 176
Eco31I GGTCTC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 132, 176
FaeI CATG 3 cut(s) 50, 335, 505
FaiI YATR 7 cut(s) 48, 199, 201, 260, 333, 495, 503
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FatI CATG 3 cut(s) 46, 331, 501
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 324, 514
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 2 cut(s) 132, 176
Fsp4HI GCNGC 2 cut(s) 324, 514
FspBI CTAG 1 cut(s) 207
GluI GCNGC 2 cut(s) 324, 514
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 365
HapII CCGG 1 cut(s) 481
Hin1II CATG 3 cut(s) 50, 335, 505
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 2 cut(s) 113, 220
HpaII CCGG 1 cut(s) 481
HphI GGTGA 2 cut(s) 67, 278
Hpy166II GTNNAC 2 cut(s) 37, 402
Hpy188I TCNGA 1 cut(s) 431
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 37, 402
HpyAV CCTTC 3 cut(s) 263, 368, 531
HpyCH4III ACNGT 2 cut(s) 257, 561
HpyCH4V TGCA 3 cut(s) 46, 182, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 29, 320
HpyF3I CTNAG 2 cut(s) 131, 216
Hsp92II CATG 3 cut(s) 50, 335, 505
KpnI GGTACC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 432
Lsp1109I GCAGC 2 cut(s) 310, 525
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 55, 146, 386
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 132, 176
MluCI AATT 2 cut(s) 165, 497
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 4 cut(s) 91, 237, 354, 463
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 4 cut(s) 9, 291, 317, 366
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 20, 29, 320
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 50, 335, 505
NlaIV GGNNCC 1 cut(s) 5
NmuCI GTSAC 2 cut(s) 55, 386
NsiI ATGCAT 1 cut(s) 316
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 325, 515
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 5, 337
RsaNI GTAC 2 cut(s) 4, 336
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 176
SaqAI TTAA 4 cut(s) 9, 291, 317, 366
SatI GCNGC 2 cut(s) 324, 514
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 2 cut(s) 132, 176
SetI ASST 7 cut(s) 9, 176, 325, 379, 429, 453, 518
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 165, 497
SsiI CCGC 2 cut(s) 81, 273
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 257, 561
TasI AATT 2 cut(s) 165, 497
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 4 cut(s) 9, 291, 317, 366
Tru9I TTAA 4 cut(s) 9, 291, 317, 366
TscAI CASTG 2 cut(s) 48, 564
TseFI GTSAC 2 cut(s) 55, 386
TseI GCWGC 2 cut(s) 323, 513
Tsp45I GTSAC 2 cut(s) 55, 386
TspDTI ATGAA 4 cut(s) 63, 186, 490, 510
TspRI CASTG 2 cut(s) 48, 564
XapI RAATTY 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.