Rroxscaffold_4G00289450

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000305
Physical Location & Seq
Reverse (-)
10077677 .. 10079484
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289450.1

Sequence Viewer

Length: 747 bp
ATGGTTGAAATTTACTACCTAGGAAGGCTGCATCATCCAAATGTTGTGAAGTTGTTGGGTTATTGCTTCGAGGATGACCACCGGCTTCTGGTTTATGAATTTATGGCTCATGGAAGCTTGGAGGTTTATCTATTTGGATGGGCTTCTTACCTTCAACCACTTTCGTGGATCCTGCGCATGAAGATTGCCCTTGTTGCTGCCAAATCTCTAGCATTTATTCATAATAGTGAGGCAAAAGTGATCCATCGGGACTTCAAAAGTTCTAATATCCTACTGGATTCAGATGGACCAGCAGGTGATAGTAGCCATGTCTCGACAAGGGTGATGGGGACATATGGGTATGCAGCTCCAGAGTATGTTGCTACAGAAAACCAGTTCTTGACACCAGCCGGGCAACGTACCAGGGAAAAAGATCTAGTTGAATGGGCCATACCATACCTTGCCAGCAAACGCAGAGTTCTCAAAATTTTTGATGCTCGTATTAAAGGCCAGTACTCTGTGGCCGCAGCTCGTAAAGCAGCTAACCTTGCAAATCAATGCTTATCAACAGAACCCGAATTCAGGCCAAACATGAATAAGGTGGTAAAAGCATTGGAGCAGCTTCAGGAATCAGGTGACATTGAGGACCTAGGAGTCTCTCATAACGAGCCTCGCCAATCTCTTTATTCCAATTCAAGCAGTGTCATATCAAACTGGGGAAGTTGGACCAGCTTCAGGTCATCTGCTTCTAGCAGCTACATAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.96

Weight (kDa)

8.42

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 125 1.9e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 95 1.5e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 284
AasI GACNNNNNNGTC 1 cut(s) 632
Acc16I TGCGCA 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 284
AciI CCGC 1 cut(s) 504
AclWI GGATC 3 cut(s) 163, 176, 235
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 4 cut(s) 9, 98, 465, 557
AcuI CTGAAG 2 cut(s) 587, 697
AfaI GTAC 2 cut(s) 400, 494
AfiI CCNNNNNNNGG 3 cut(s) 88, 561, 714
AgsI TTSAA 5 cut(s) 8, 155, 256, 422, 675
AjnI CCWGG 1 cut(s) 401
AleI CACNNNNGTG 1 cut(s) 163
AluBI AGCT 7 cut(s) 117, 347, 509, 521, 601, 711, 735
AluI AGCT 7 cut(s) 117, 347, 509, 521, 601, 711, 735
Alw26I GTCTC 2 cut(s) 316, 640
AlwI GGATC 3 cut(s) 163, 176, 235
AoxI GGCC 4 cut(s) 426, 487, 501, 563
ApeKI GCWGC 7 cut(s) 28, 197, 344, 506, 518, 598, 732
ApoI RAATTY 4 cut(s) 9, 98, 465, 557
AspA2I CCTAGG 2 cut(s) 19, 628
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 4 cut(s) 287, 426, 625, 705
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 3 cut(s) 308, 334, 626
AvaII GGWCC 3 cut(s) 287, 625, 705
AvrII CCTAGG 2 cut(s) 19, 628
BamHI GGATCC 1 cut(s) 168
BbvI GCAGC 6 cut(s) 15, 184, 356, 518, 530, 610
BccI CCATC 4 cut(s) 132, 252, 278, 319
BciT130I CCWGG 1 cut(s) 403
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 316, 640
BfaI CTAG 5 cut(s) 20, 209, 416, 629, 729
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 412
BisI GCNGC 8 cut(s) 29, 198, 345, 504, 507, 519, 599, 733
BlnI CCTAGG 2 cut(s) 19, 628
BlsI GCNGC 8 cut(s) 30, 199, 346, 505, 508, 520, 600, 734
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 2 cut(s) 391, 403
Bme18I GGWCC 3 cut(s) 287, 625, 705
BmgT120I GGNCC 4 cut(s) 287, 426, 625, 705
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 391, 403
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 2 cut(s) 40, 463
BmuI ACTGGG 1 cut(s) 703
BpmI CTGGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 19, 402, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 561, 714
Bse118I RCCGGY 1 cut(s) 81
Bse1I ACTGG 4 cut(s) 279, 373, 490, 698
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 3 cut(s) 19, 402, 628
BseGI GGATG 3 cut(s) 34, 79, 143
BseLI CCNNNNNNNGG 3 cut(s) 88, 561, 714
BseNI ACTGG 4 cut(s) 279, 373, 490, 698
BseXI GCAGC 6 cut(s) 15, 184, 356, 518, 530, 610
BshFI GGCC 4 cut(s) 428, 489, 503, 565
BsiSI CCGG 2 cut(s) 82, 390
BslFI GGGAC 2 cut(s) 263, 343
BslI CCNNNNNNNGG 3 cut(s) 88, 561, 714
BsmAI GTCTC 2 cut(s) 316, 640
BsmFI GGGAC 2 cut(s) 263, 343
BsnI GGCC 4 cut(s) 428, 489, 503, 565
Bsp143I GATC 3 cut(s) 168, 240, 412
BspACI CCGC 1 cut(s) 504
BspANI GGCC 4 cut(s) 428, 489, 503, 565
BspLI GGNNCC 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 3 cut(s) 163, 176, 235
BsrFI RCCGGY 1 cut(s) 81
BsrI ACTGG 4 cut(s) 279, 373, 490, 698
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 19, 402, 628
BssMI GATC 3 cut(s) 168, 240, 412
BssT1I CCWWGG 2 cut(s) 19, 628
Bst2UI CCWGG 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 445
BstF5I GGATG 3 cut(s) 34, 79, 143
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 3 cut(s) 171, 243, 415
BstMAI GTCTC 2 cut(s) 316, 640
BstMBI GATC 3 cut(s) 168, 240, 412
BstMWI GCNNNNNNNGC 3 cut(s) 194, 515, 527
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 389, 401
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 6 cut(s) 15, 184, 356, 518, 530, 610
BstX2I RGATCY 2 cut(s) 168, 412
BstXI CCANNNNNNTGG 1 cut(s) 165
BstYI RGATCY 2 cut(s) 168, 412
BsuRI GGCC 4 cut(s) 428, 489, 503, 565
BtsCI GGATG 3 cut(s) 34, 79, 143
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 685
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 4 cut(s) 287, 426, 625, 705
Csp6I GTAC 2 cut(s) 399, 493
CviAII CATG 4 cut(s) 110, 178, 308, 571
CviQI GTAC 2 cut(s) 399, 493
DpnI GATC 3 cut(s) 170, 242, 414
DpnII GATC 3 cut(s) 168, 240, 412
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 19, 628
Eco47I GGWCC 3 cut(s) 287, 625, 705
Eco57I CTGAAG 2 cut(s) 587, 697
EcoO109I RGGNCCY 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 401
EcoT14I CCWWGG 2 cut(s) 19, 628
ErhI CCWWGG 2 cut(s) 19, 628
FaeI CATG 4 cut(s) 113, 181, 311, 574
FaqI GGGAC 2 cut(s) 263, 343
FatI CATG 4 cut(s) 109, 177, 307, 570
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 8 cut(s) 29, 198, 345, 504, 507, 519, 599, 733
FokI GGATG 3 cut(s) 21, 86, 150
Fsp4HI GCNGC 8 cut(s) 29, 198, 345, 504, 507, 519, 599, 733
FspBI CTAG 5 cut(s) 20, 209, 416, 629, 729
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 1 cut(s) 176
GluI GCNGC 8 cut(s) 29, 198, 345, 504, 507, 519, 599, 733
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 4 cut(s) 428, 489, 503, 565
HapII CCGG 2 cut(s) 82, 390
HhaI GCGC 1 cut(s) 177
Hin1II CATG 4 cut(s) 113, 181, 311, 574
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 3 cut(s) 278, 608, 633
HpaII CCGG 2 cut(s) 82, 390
HphI GGTGA 3 cut(s) 308, 334, 626
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 5 cut(s) 248, 313, 350, 379, 605
HpyAV CCTTC 2 cut(s) 18, 161
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 3 cut(s) 31, 344, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 515, 527
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 4 cut(s) 113, 181, 311, 574
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 168, 240, 412
LmnI GCTCC 2 cut(s) 352, 595
Lsp1109I GCAGC 6 cut(s) 15, 184, 356, 518, 530, 610
LweI GCATC 2 cut(s) 40, 463
MaeI CTAG 5 cut(s) 20, 209, 416, 629, 729
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 614
MalI GATC 3 cut(s) 170, 242, 414
MboI GATC 3 cut(s) 168, 240, 412
MboII GAAGA 1 cut(s) 193
MflI RGATCY 2 cut(s) 168, 412
MluCI AATT 5 cut(s) 9, 98, 465, 557, 670
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 5 cut(s) 64, 115, 223, 616, 660
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 3 cut(s) 39, 163, 225
MspI CCGG 2 cut(s) 82, 390
MspR9I CCNGG 2 cut(s) 391, 403
MvaI CCWGG 1 cut(s) 403
MwoI GCNNNNNNNGC 3 cut(s) 194, 515, 527
NciI CCSGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 334
NdeII GATC 3 cut(s) 168, 240, 412
NlaIII CATG 4 cut(s) 113, 181, 311, 574
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 614
NsbI TGCGCA 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 278, 608
PkrI GCNGC 8 cut(s) 30, 199, 346, 505, 508, 520, 600, 734
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PpuMI RGGWCCY 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 4 cut(s) 287, 426, 625, 705
PspPPI RGGWCCY 1 cut(s) 625
PsuI RGATCY 2 cut(s) 168, 412
RsaI GTAC 2 cut(s) 400, 494
RsaNI GTAC 2 cut(s) 399, 493
RseI CAYNNNNRTG 3 cut(s) 39, 163, 225
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 8 cut(s) 29, 198, 345, 504, 507, 519, 599, 733
Sau3AI GATC 3 cut(s) 168, 240, 412
Sau96I GGNCC 4 cut(s) 287, 426, 625, 705
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 2 cut(s) 391, 403
SfaNI GCATC 2 cut(s) 40, 463
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 3 cut(s) 287, 625, 705
SmiMI CAYNNNNRTG 3 cut(s) 39, 163, 225
Sse9I AATT 5 cut(s) 9, 98, 465, 557, 670
SsiI CCGC 1 cut(s) 504
SspMI CTAG 5 cut(s) 20, 209, 416, 629, 729
StyD4I CCNGG 2 cut(s) 389, 401
StyI CCWWGG 2 cut(s) 19, 628
TaiI ACGT 1 cut(s) 400
TaqI TCGA 2 cut(s) 69, 314
TasI AATT 5 cut(s) 9, 98, 465, 557, 670
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 2 cut(s) 278, 608
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 7 cut(s) 28, 197, 344, 506, 518, 598, 732
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 111, 194, 209, 587
TspRI CASTG 1 cut(s) 685
VpaK11BI GGWCC 3 cut(s) 287, 625, 705
XapI RAATTY 4 cut(s) 9, 98, 465, 557
XmaJI CCTAGG 2 cut(s) 19, 628
XspI CTAG 5 cut(s) 20, 209, 416, 629, 729
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.