Rroxscaffold_6G00420130

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000305
Physical Location & Seq
Forward (+)
41468634 .. 41468930
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420130.1

Sequence Viewer

Length: 297 bp
ATGATTTTCTGGAAATTTCTCCTTCTATTTCCGCTACTAGCCCTAGCTTTCTTCCCCATCTTCTTCCATTCCCACCTCCTACTGCGGCCGTTGATCATAAGCACGCCGAGCCCCATTTCAAGGAGCTTGAGGAAGAGCTTAGGCTACAGTGTACCACCATGGAAGACAATCCCCGAGGAATGTGTAGAGTATGTGAAGGACTACTTCACCGGCTGGGATTATGGTATTGATTTGGAGAGGGTTTCTAACGATGCTGGGGTTTATACCATGAGTGTTGAATTGAGTGGTACAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

98

Amino Acids

11.29

Weight (kDa)

6.04

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 85
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 2 cut(s) 153, 289
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 2 cut(s) 120, 278
AluBI AGCT 3 cut(s) 47, 126, 138
AluI AGCT 3 cut(s) 47, 126, 138
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 73
BclI TGATCA 1 cut(s) 93
BfaI CTAG 2 cut(s) 38, 44
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
BmeT110I CYCGRG 1 cut(s) 173
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 158, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 158, 174
BseLI CCNNNNNNNGG 1 cut(s) 120
BseX3I CGGCCG 1 cut(s) 86
BseYI CCCAGC 2 cut(s) 213, 254
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 120
BsnI GGCC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 2 cut(s) 32, 85
BspANI GGCC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 158, 174
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 149, 292
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 158
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 170
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 158
BtsIMutI CAGTG 2 cut(s) 154, 297
Cac8I GCNNGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 209
Csp6I GTAC 2 cut(s) 152, 288
CviAII CATG 2 cut(s) 159, 268
CviJI RGCY 8 cut(s) 41, 47, 88, 111, 126, 138, 144, 213
CviKI_1 RGCY 8 cut(s) 41, 47, 88, 111, 126, 138, 144, 213
CviQI GTAC 2 cut(s) 152, 288
DdeI CTNAG 1 cut(s) 139
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 113
Eco52I CGGCCG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 162, 271
FaiI YATR 6 cut(s) 98, 160, 192, 222, 264, 269
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 2 cut(s) 158, 267
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 2 cut(s) 38, 44
GluI GCNGC 1 cut(s) 86
GsaI CCCAGC 2 cut(s) 217, 258
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 162, 271
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 32, 190
HpyCH4III ACNGT 2 cut(s) 149, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 2 cut(s) 162, 271
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 199, 223, 240
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 38, 44
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 5 cut(s) 43, 52, 55, 145, 175
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 2 cut(s) 14, 278
MnlI CCTC 4 cut(s) 86, 123, 169, 231
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 108
NcoI CCATGG 1 cut(s) 158
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 162, 271
NmeAIII GCCGAG 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 87
PspFI CCCAGC 2 cut(s) 213, 254
RsaI GTAC 2 cut(s) 153, 289
RsaNI GTAC 2 cut(s) 152, 288
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 113
SetI ASST 4 cut(s) 49, 78, 128, 140
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 2 cut(s) 14, 278
SsiI CCGC 2 cut(s) 32, 85
SspMI CTAG 2 cut(s) 38, 44
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 149, 292
TasI AATT 2 cut(s) 14, 278
TauI GCSGC 1 cut(s) 88
TscAI CASTG 2 cut(s) 154, 297
TspRI CASTG 2 cut(s) 154, 297
XapI RAATTY 1 cut(s) 14
XspI CTAG 2 cut(s) 38, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.