Rroxscaffold_6G00421370
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
42545638 .. 42548418
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421370.1

Sequence Viewer

Length: 678 bp
ATGACGACGACGTCGACTGGGTCCGAACCCATGGCGGTGAATTCCACCAATGCAGACCTGCATGTGTCATCTGTCTCAGTGCCTTCAACTCCTTGGACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGGAACTTTCAGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTACTGTCTTTAAAGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTAAAGGAACGGCTGTTGCTATAAAGAGGCTTAACCAAGAAAGTCATCTAAACACCAAATGTGATGTGTATGGTTTTGGAGCTGTTATGCTCGAATTGTTGTCTGGAAAACGAGTTTTTGACCGGAGCCGGCCACCCGGGGAACAGAGATTAGTTAAATGGGCCAAACCTTACCTTGTCAGCAAACAGAGAGTCCTCCAAATTTTTGATTCTCATATTAAAGGCCAGTTTTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATCGAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAACATTGGAGAAGCTTCAAGAATCCAGTGACATGGATGGCTTGGGGATCTCTCAAAATAAACGTTGCCAATATCCACATGGCAGTTTAATCAATGGTACCAAATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

24.79

Weight (kDa)

9.56

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 66
Acc65I GGTACC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 668
AccI GTMKAC 1 cut(s) 14
AciI CCGC 2 cut(s) 35, 147
AclI AACGTT 1 cut(s) 634
AclWI GGATC 2 cut(s) 530, 626
AcoI YGGCCR 2 cut(s) 380, 486
AcsI RAATTY 3 cut(s) 40, 226, 450
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 199, 670
AfiI CCNNNNNNNGG 3 cut(s) 153, 254, 546
AgsI TTSAA 2 cut(s) 87, 590
AjnI CCWGG 2 cut(s) 152, 247
AluBI AGCT 6 cut(s) 123, 239, 332, 494, 544, 586
AluI AGCT 6 cut(s) 123, 239, 332, 494, 544, 586
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 530, 626
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 5 cut(s) 380, 411, 472, 486, 548
ApeKI GCWGC 2 cut(s) 236, 239
ApoI RAATTY 3 cut(s) 40, 226, 450
ArsI GACNNNNNNTTYG 2 cut(s) 426, 458
Asp718I GGTACC 1 cut(s) 668
AspS9I GGNCC 2 cut(s) 21, 411
AsuC2I CCSGG 2 cut(s) 387, 388
AsuHPI GGTGA 2 cut(s) 49, 194
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 488
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 2 cut(s) 226, 248
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 154, 249
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 387, 388
BcoDI GTCTC 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 66
BglII AGATCT 1 cut(s) 108
BisI GCNGC 2 cut(s) 237, 240
BlsI GCNGC 2 cut(s) 238, 241
Bme1390I CCNGG 4 cut(s) 154, 249, 387, 388
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 21, 411
BmiI GGNNCC 3 cut(s) 22, 377, 670
BmrFI CCNGG 4 cut(s) 154, 249, 387, 388
BmrI ACTGGG 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 387, 388
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 30, 92, 386, 387
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 254, 546
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 3 cut(s) 22, 475, 597
BseBI CCWGG 2 cut(s) 154, 249
BseDI CCNNGG 4 cut(s) 30, 92, 386, 387
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 3 cut(s) 153, 254, 546
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 22, 475, 597
BseXI GCAGC 2 cut(s) 226, 248
BshFI GGCC 5 cut(s) 382, 413, 474, 488, 550
BshNI GGYRCC 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 3 cut(s) 373, 379, 387
BslI CCNNNNNNNGG 3 cut(s) 153, 254, 546
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 5 cut(s) 382, 413, 474, 488, 550
BsoBI CYCGRG 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 4 cut(s) 108, 220, 535, 618
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 35, 147
BspANI GGCC 5 cut(s) 382, 413, 474, 488, 550
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 22, 377, 670
BspMI ACCTGC 1 cut(s) 66
BspPI GGATC 2 cut(s) 530, 626
BspT107I GGYRCC 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 3 cut(s) 22, 475, 597
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 4 cut(s) 30, 92, 386, 387
BssMI GATC 4 cut(s) 108, 220, 535, 618
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 30, 92
Bst2UI CCWGG 2 cut(s) 154, 249
Bst4CI ACNGT 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 76, 545
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 613
BstKTI GATC 4 cut(s) 111, 223, 538, 621
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 108, 220, 535, 618
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 2 cut(s) 154, 249
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 4 cut(s) 152, 247, 385, 386
BstV1I GCAGC 2 cut(s) 226, 248
BstX2I RGATCY 3 cut(s) 108, 535, 618
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 3 cut(s) 108, 535, 618
BsuRI GGCC 5 cut(s) 382, 413, 474, 488, 550
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 613
BtsIMutI CAGTG 2 cut(s) 84, 604
BveI ACCTGC 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 21, 411
Cfr9I CCCGGG 1 cut(s) 386
Csp6I GTAC 2 cut(s) 198, 669
CviAII CATG 5 cut(s) 31, 62, 556, 604, 650
CviQI GTAC 2 cut(s) 198, 669
DdeI CTNAG 2 cut(s) 76, 545
DpnI GATC 4 cut(s) 110, 222, 537, 620
DpnII GATC 4 cut(s) 108, 220, 535, 618
DraI TTTAAA 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 380, 486
Ecl136II GAGCTC 1 cut(s) 494
Eco130I CCWWGG 2 cut(s) 30, 92
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 494
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRI GAATTC 2 cut(s) 40, 226
EcoRII CCWGG 2 cut(s) 152, 247
EcoT14I CCWWGG 2 cut(s) 30, 92
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 30, 92
FaeI CATG 5 cut(s) 34, 65, 559, 607, 653
FaiI YATR 9 cut(s) 32, 63, 272, 321, 338, 465, 557, 605, 651
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 5 cut(s) 30, 61, 555, 603, 649
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 237, 240
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 2 cut(s) 237, 240
GluI GCNGC 2 cut(s) 237, 240
HaeIII GGCC 5 cut(s) 382, 413, 474, 488, 550
HapII CCGG 3 cut(s) 373, 379, 387
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 5 cut(s) 34, 65, 559, 607, 653
HincII GTYRAC 2 cut(s) 15, 508
HindII GTYRAC 2 cut(s) 15, 508
HindIII AAGCTT 2 cut(s) 542, 584
HinfI GANTC 3 cut(s) 441, 458, 593
HpaII CCGG 3 cut(s) 373, 379, 387
HphI GGTGA 2 cut(s) 49, 194
Hpy166II GTNNAC 2 cut(s) 15, 508
Hpy188I TCNGA 2 cut(s) 25, 225
Hpy188III TCNNGA 3 cut(s) 354, 531, 590
Hpy8I GTNNAC 2 cut(s) 15, 508
Hpy99I CGWCG 3 cut(s) 10, 13, 16
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 11, 634
HpyCH4V TGCA 3 cut(s) 53, 61, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 76, 545
HpySE526I ACGT 2 cut(s) 11, 634
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 34, 65, 559, 607, 653
KpnI GGTACC 1 cut(s) 672
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 108, 220, 535, 618
LmnI GCTCC 2 cut(s) 329, 375
Lsp1109I GCAGC 2 cut(s) 226, 248
MaeII ACGT 2 cut(s) 11, 634
MaeIII GTNAC 1 cut(s) 599
MalI GATC 4 cut(s) 110, 222, 537, 620
MboI GATC 4 cut(s) 108, 220, 535, 618
MflI RGATCY 3 cut(s) 108, 535, 618
MhlI GDGCHC 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 4 cut(s) 40, 226, 344, 450
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 1 cut(s) 450
MnlI CCTC 4 cut(s) 94, 178, 270, 455
Mox20I TGGCCA 1 cut(s) 488
MroNI GCCGGC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 488
MseI TTAA 7 cut(s) 132, 207, 282, 405, 468, 498, 659
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 373, 379, 387
MspR9I CCNGG 4 cut(s) 154, 249, 387, 388
MvaI CCWGG 2 cut(s) 154, 249
MwoI GCNNNNNNNGC 1 cut(s) 500
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 2 cut(s) 387, 388
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 108, 220, 535, 618
NgoMIV GCCGGC 1 cut(s) 378
NlaIII CATG 5 cut(s) 34, 65, 559, 607, 653
NlaIV GGNNCC 3 cut(s) 22, 377, 670
NmuCI GTSAC 1 cut(s) 599
NspI RCATGY 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 458, 593
PflFI GACNNNGTC 2 cut(s) 10, 19
PkrI GCNGC 2 cut(s) 238, 241
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 634
Psp6I CCWGG 2 cut(s) 152, 247
PspGI CCWGG 2 cut(s) 152, 247
PspN4I GGNNCC 3 cut(s) 22, 377, 670
PspPI GGNCC 2 cut(s) 21, 411
PsuI RGATCY 3 cut(s) 108, 535, 618
PsyI GACNNNGTC 2 cut(s) 10, 19
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 199, 670
RsaNI GTAC 2 cut(s) 198, 669
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 496
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 7 cut(s) 132, 207, 282, 405, 468, 498, 659
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 4 cut(s) 108, 220, 535, 618
Sau96I GGNCC 2 cut(s) 21, 411
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 4 cut(s) 154, 249, 387, 388
SduI GDGCHC 1 cut(s) 496
SinI GGWCC 1 cut(s) 21
SmaI CCCGGG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 4 cut(s) 40, 226, 344, 450
SsiI CCGC 2 cut(s) 35, 147
SstI GAGCTC 1 cut(s) 496
StyD4I CCNGG 4 cut(s) 152, 247, 385, 386
StyI CCWWGG 2 cut(s) 30, 92
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 14, 637
TaqI TCGA 3 cut(s) 14, 342, 530
TasI AATT 4 cut(s) 40, 226, 344, 450
TfiI GAWTC 2 cut(s) 458, 593
Tru1I TTAA 7 cut(s) 132, 207, 282, 405, 468, 498, 659
Tru9I TTAA 7 cut(s) 132, 207, 282, 405, 468, 498, 659
TscAI CASTG 2 cut(s) 84, 604
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 2 cut(s) 236, 239
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 3 cut(s) 150, 219, 572
TspMI CCCGGG 1 cut(s) 386
TspRI CASTG 2 cut(s) 84, 604
Tth111I GACNNNGTC 2 cut(s) 10, 19
VpaK11BI GGWCC 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 3 cut(s) 40, 226, 450
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XmaI CCCGGG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 14
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.