RLG00000001400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
15058746 .. 15060233
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001400

Sequence Viewer

Length: 399 bp
ATGTTGCGCCCAGGTCATCTAAACACCAAATGTGATGTGTATGGTTTTGGAGCTGTTATGCTTGAATTGTTGTCAGGAAAACGAGTTTTTGACCAGAGCCGGCCACCCGGGGAACAAAAATTAGTTAAATGGGCCAAACCTTACCTTCTCAGCAAACAGAGAGTCCTCCAAATTTGTTATTCTCATATTAAAGGCCAGTTTTCTGTGGCCAGAGCTCTTAAAGCAGTTGACCTTGCATTTCTTTGCCTATTGAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAACATTGGAGAAGCTTCAGGAATCCAGTGACATGGATGGCTTGGGGATCTCTCAAAATAAACGTCGCCAATATCCACATGGCAGTTTAATCAATGGCCCCAAATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.93

Weight (kDa)

9.97

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 251, 347
AcoI YGGCCR 2 cut(s) 101, 207
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 4 cut(s) 53, 215, 265, 307
AluI AGCT 4 cut(s) 53, 215, 265, 307
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 251, 347
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 6 cut(s) 101, 132, 193, 207, 269, 388
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 4 cut(s) 147, 179, 340, 372
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 132, 389
AsuC2I CCSGG 2 cut(s) 108, 109
AvaI CYCGRG 1 cut(s) 107
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 2 cut(s) 108, 109
Bme1390I CCNGG 3 cut(s) 12, 108, 109
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 132, 389
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 3 cut(s) 12, 108, 109
Bpu10I CCTNAGC 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 108, 109
BsaJI CCNNGG 3 cut(s) 10, 107, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 196, 318
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 10, 107, 108
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 196, 318
BshFI GGCC 6 cut(s) 103, 134, 195, 209, 271, 390
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 100, 108
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 6 cut(s) 103, 134, 195, 209, 271, 390
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 256, 339
BspANI GGCC 6 cut(s) 103, 134, 195, 209, 271, 390
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 2 cut(s) 251, 347
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 2 cut(s) 196, 318
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 3 cut(s) 10, 107, 108
BssMI GATC 2 cut(s) 256, 339
Bst2UI CCWGG 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 149, 266
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 259, 342
BstMBI GATC 2 cut(s) 256, 339
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 10, 106, 107
BstX2I RGATCY 2 cut(s) 256, 339
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 2 cut(s) 256, 339
BsuRI GGCC 6 cut(s) 103, 134, 195, 209, 271, 390
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 132, 389
Cfr9I CCCGGG 1 cut(s) 107
CviAII CATG 3 cut(s) 277, 325, 371
DdeI CTNAG 2 cut(s) 149, 266
DpnI GATC 2 cut(s) 258, 341
DpnII GATC 2 cut(s) 256, 339
EaeI YGGCCR 2 cut(s) 101, 207
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 3 cut(s) 280, 328, 374
FaiI YATR 6 cut(s) 42, 59, 186, 278, 326, 372
FatI CATG 3 cut(s) 276, 324, 370
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 217
GlaI GCGC 1 cut(s) 8
HaeIII GGCC 6 cut(s) 103, 134, 195, 209, 271, 390
HapII CCGG 2 cut(s) 100, 108
HhaI GCGC 1 cut(s) 9
Hin1II CATG 3 cut(s) 280, 328, 374
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 2 cut(s) 263, 305
HinfI GANTC 2 cut(s) 162, 314
HpaII CCGG 2 cut(s) 100, 108
Hpy166II GTNNAC 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 75, 311
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 149, 266
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 280, 328, 374
HspAI GCGC 1 cut(s) 7
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 256, 339
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 9 cut(s) 24, 60, 107, 113, 121, 209, 223, 296, 331
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 258, 341
MboI GATC 2 cut(s) 256, 339
MflI RGATCY 2 cut(s) 256, 339
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 3 cut(s) 65, 119, 171
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 1 cut(s) 176
Mox20I TGGCCA 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 99
MscI TGGCCA 1 cut(s) 209
MseI TTAA 4 cut(s) 126, 189, 219, 380
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 2 cut(s) 100, 108
MspR9I CCNGG 3 cut(s) 12, 108, 109
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 221
NaeI GCCGGC 1 cut(s) 101
NciI CCSGG 2 cut(s) 108, 109
NdeII GATC 2 cut(s) 256, 339
NgoMIV GCCGGC 1 cut(s) 99
NlaIII CATG 3 cut(s) 280, 328, 374
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 320
PdiI GCCGGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 314
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 2 cut(s) 132, 389
PsuI RGATCY 2 cut(s) 256, 339
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 4 cut(s) 126, 189, 219, 380
Sau3AI GATC 2 cut(s) 256, 339
Sau96I GGNCC 2 cut(s) 132, 389
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 3 cut(s) 12, 108, 109
SduI GDGCHC 1 cut(s) 217
SetI ASST 9 cut(s) 16, 55, 142, 147, 217, 234, 267, 309, 358
SmaI CCCGGG 1 cut(s) 109
Sse9I AATT 3 cut(s) 65, 119, 171
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 10, 106, 107
TaiI ACGT 1 cut(s) 358
TasI AATT 3 cut(s) 65, 119, 171
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 4 cut(s) 126, 189, 219, 380
Tru9I TTAA 4 cut(s) 126, 189, 219, 380
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 293
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 1 cut(s) 325
XapI RAATTY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XmaI CCCGGG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.