Rh1BG304100

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000305
Physical Location & Seq
Forward (+)
44026666 .. 44030044
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG304100.1

Sequence Viewer

Length: 1296 bp
ATGAACCTTTCCACCACTCCCGTCGTACAAACCGGAACTTGCAGCAGTTCGCCGCCGGCTATAGATAGCTTACTGAATGAGCTCCAGTGCTCTCAGTTGCGATCAGAAGCAGTAACTTGGGACTGTTACTATGAGTGTCTGACTGGGGAGATAGCTGATACAGTGCATGAGATGAATGAGATCATCAATACAAATTTCACTGCACTCCAAGCTCACAATGTGCCTTCAACTCCTCAGACAGAGGGTGAAATCTTGTTAAAAAGATTTCTCTTCAATGAACTGAAAATAGCAACCTGGAACTTTCATCCTGATAATATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGTAATTCATCAACAGCTGCCAAGACTGGTAGTGGCATGTTAATTGCTGTGAAGACGATTGACCAAGAAGGTTTCCAGGGTCAAGAGGAATGGTTGACAGAAATCTACTATCTAGGAAGGTTGCGACATCCAAATCTTGTGAAGTTGTTGGGTTATTGCTTTGAGGACAACCACCGGCTTCTGGTTTATGAATTTATGCCTCATGGAAGCTTGGAGATTCATCTATATGGAAGGGATTCTTACCTTGAACCACTTTCATGGACCCTGCGTATGAAGATTGCCCTTGGTGTTGCCAACGTTCTTGCATTTCTTCATGGTACTGAGGGAAAAGTGATCCATCGGGACGTTAAAACTTCTAATATCCTGCTCGATTCAACCTACAATGCCAAACTCTCTGATTTTGGTTTGGCAAAGGATATACCAGCTGGTGATGAAAGCCATGTCTTAACAAGGGTGGTGGGGACACATGGGTATGGAGCTCCTGAGTATATTTCTACAGGTCATTTATCCTGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTGGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTATCTAGCCAGCAAAAGCAGAGCTCTCAAAATTTTTGATGCTCGTATTGAAGGCCAGTACTCTGTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTCGGGAATCTCCCAAAATGAGCCTTGCCAAACTCCTTGTGCCAATTCAAGCAATCGCAGGAGAAGCACAAGCTGGATCAGCTTTAGGCCATGTGCTTCCTGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

431

Amino Acids

47.81

Weight (kDa)

5.66

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 104 - 380 1.3e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 105 - 383 2.1e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclI AACGTT 1 cut(s) 660
AclWI GGATC 2 cut(s) 691, 1265
AcsI RAATTY 3 cut(s) 193, 554, 1020
AcuI CTGAAG 1 cut(s) 1142
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 3 cut(s) 27, 682, 1049
AfiI CCNNNNNNNGG 2 cut(s) 544, 1116
AgsI TTSAA 8 cut(s) 228, 274, 611, 738, 914, 977, 1040, 1230
AjnI CCWGG 3 cut(s) 293, 438, 956
AloI GAACNNNNNNTCC 2 cut(s) 918, 950
Alw21I GWGCWC 5 cut(s) 84, 92, 844, 1015, 1066
AlwI GGATC 2 cut(s) 691, 1265
Ama87I CYCGRG 1 cut(s) 1109
AoxI GGCC 4 cut(s) 981, 1042, 1118, 1268
ApeKI GCWGC 5 cut(s) 42, 380, 1073, 1153, 1284
ApoI RAATTY 3 cut(s) 193, 554, 1020
Asp700I GAANNNNTTC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 624, 981
AsuHPI GGTGA 3 cut(s) 257, 803, 1181
AvaI CYCGRG 1 cut(s) 1109
AvaII GGWCC 1 cut(s) 624
BanII GRGCYC 4 cut(s) 84, 844, 1015, 1066
BbsI GAAGAC 2 cut(s) 422, 934
Bbv12I GWGCWC 5 cut(s) 84, 92, 844, 1015, 1066
BbvI GCAGC 4 cut(s) 54, 367, 1085, 1165
BccI CCATC 2 cut(s) 356, 708
BciT130I CCWGG 3 cut(s) 295, 440, 958
BfaI CTAG 2 cut(s) 476, 995
BfmI CTRYAG 3 cut(s) 60, 858, 1282
BisI GCNGC 6 cut(s) 43, 53, 381, 1074, 1154, 1285
BlsI GCNGC 6 cut(s) 44, 54, 382, 1075, 1155, 1286
BmcAI AGTACT 1 cut(s) 1049
Bme1390I CCNGG 3 cut(s) 295, 440, 958
Bme18I GGWCC 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 1109
BmgT120I GGNCC 2 cut(s) 624, 981
BmiI GGNNCC 1 cut(s) 626
BmrFI CCNGG 3 cut(s) 295, 440, 958
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 1018, 1082
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 422, 934
BpmI CTGGAG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 1090
BsaBI GATNNNNATC 1 cut(s) 1096
BsaJI CCNNGG 4 cut(s) 439, 646, 956, 957
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 1116
Bse118I RCCGGY 2 cut(s) 55, 537
Bse1I ACTGG 4 cut(s) 85, 148, 394, 1045
Bse8I GATNNNNATC 1 cut(s) 1096
BseBI CCWGG 3 cut(s) 295, 440, 958
BseCI ATCGAT 1 cut(s) 1090
BseDI CCNNGG 4 cut(s) 439, 646, 956, 957
BseGI GGATG 2 cut(s) 304, 490
BseJI GATNNNNATC 1 cut(s) 1096
BseLI CCNNNNNNNGG 2 cut(s) 544, 1116
BseMII CTCAG 4 cut(s) 107, 248, 675, 837
BseNI ACTGG 4 cut(s) 85, 148, 394, 1045
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 4 cut(s) 54, 367, 1085, 1165
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 4 cut(s) 983, 1044, 1120, 1270
BshVI ATCGAT 1 cut(s) 1090
BsiHKAI GWGCWC 5 cut(s) 84, 92, 844, 1015, 1066
BsiHKCI CYCGRG 1 cut(s) 1109
BsiSI CCGG 3 cut(s) 33, 56, 538
BslFI GGGAC 3 cut(s) 134, 719, 838
BslI CCNNNNNNNGG 2 cut(s) 544, 1116
BsmFI GGGAC 3 cut(s) 134, 719, 838
BsnI GGCC 4 cut(s) 983, 1044, 1120, 1270
BsoBI CYCGRG 1 cut(s) 1109
Bsp1286I GDGCHC 5 cut(s) 84, 92, 844, 1015, 1066
Bsp143I GATC 4 cut(s) 101, 180, 696, 1257
BspACI CCGC 1 cut(s) 53
BspANI GGCC 4 cut(s) 983, 1044, 1120, 1270
BspCNI CTCAG 4 cut(s) 106, 247, 676, 838
BspDI ATCGAT 1 cut(s) 1090
BspLI GGNNCC 1 cut(s) 626
BspMAI CTGCAG 1 cut(s) 1286
BspPI GGATC 2 cut(s) 691, 1265
BsrFI RCCGGY 2 cut(s) 55, 537
BsrI ACTGG 4 cut(s) 85, 148, 394, 1045
BssAI RCCGGY 2 cut(s) 55, 537
BssECI CCNNGG 4 cut(s) 439, 646, 956, 957
BssMI GATC 4 cut(s) 101, 180, 696, 1257
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 3 cut(s) 295, 440, 958
Bst4CI ACNGT 3 cut(s) 125, 163, 950
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 57, 1000
BstDEI CTNAG 4 cut(s) 93, 234, 684, 846
BstF5I GGATG 2 cut(s) 304, 490
BstKTI GATC 4 cut(s) 104, 183, 699, 1260
BstMBI GATC 4 cut(s) 101, 180, 696, 1257
BstMWI GCNNNNNNNGC 5 cut(s) 209, 1070, 1082, 1245, 1260
BstNI CCWGG 3 cut(s) 295, 440, 958
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 293, 438, 956
BstSFI CTRYAG 3 cut(s) 60, 858, 1282
BstV1I GCAGC 4 cut(s) 54, 367, 1085, 1165
BstV2I GAAGAC 2 cut(s) 422, 934
BstXI CCANNNNNNTGG 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 1090
BsuRI GGCC 4 cut(s) 983, 1044, 1120, 1270
BsuTUI ATCGAT 1 cut(s) 1090
BtsCI GGATG 2 cut(s) 304, 490
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 92, 168, 198
Cac8I GCNNGC 2 cut(s) 57, 1000
Cfr10I RCCGGY 2 cut(s) 55, 537
Cfr13I GGNCC 2 cut(s) 624, 981
ClaI ATCGAT 1 cut(s) 1090
Csp6I GTAC 3 cut(s) 26, 681, 1048
CspCI CAANNNNNGTGG 2 cut(s) 801, 836
CviQI GTAC 3 cut(s) 26, 681, 1048
DdeI CTNAG 4 cut(s) 93, 234, 684, 846
DpnI GATC 4 cut(s) 103, 182, 698, 1259
DpnII GATC 4 cut(s) 101, 180, 696, 1257
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 4 cut(s) 82, 842, 1013, 1064
Eco130I CCWWGG 1 cut(s) 646
Eco24I GRGCYC 4 cut(s) 84, 844, 1015, 1066
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 4 cut(s) 82, 842, 1013, 1064
Eco57I CTGAAG 1 cut(s) 1142
Eco88I CYCGRG 1 cut(s) 1109
EcoICRI GAGCTC 4 cut(s) 82, 842, 1013, 1064
EcoRII CCWGG 3 cut(s) 293, 438, 956
EcoT14I CCWWGG 1 cut(s) 646
EcoT22I ATGCAT 1 cut(s) 1097
EcoT38I GRGCYC 4 cut(s) 84, 844, 1015, 1066
ErhI CCWWGG 1 cut(s) 646
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FaqI GGGAC 3 cut(s) 134, 719, 838
Fnu4HI GCNGC 6 cut(s) 43, 53, 381, 1074, 1154, 1285
FokI GGATG 2 cut(s) 291, 477
FriOI GRGCYC 4 cut(s) 84, 844, 1015, 1066
Fsp4HI GCNGC 6 cut(s) 43, 53, 381, 1074, 1154, 1285
FspBI CTAG 2 cut(s) 476, 995
GluI GCNGC 6 cut(s) 43, 53, 381, 1074, 1154, 1285
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 4 cut(s) 983, 1044, 1120, 1270
HapII CCGG 3 cut(s) 33, 56, 538
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 5 cut(s) 580, 599, 734, 1163, 1188
HpaII CCGG 3 cut(s) 33, 56, 538
HphI GGTGA 3 cut(s) 257, 803, 1181
Hpy166II GTNNAC 2 cut(s) 459, 953
Hpy188I TCNGA 4 cut(s) 106, 141, 237, 760
Hpy188III TCNNGA 8 cut(s) 308, 446, 704, 845, 924, 938, 1160, 1185
Hpy8I GTNNAC 2 cut(s) 459, 953
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 5 cut(s) 234, 425, 474, 588, 1034
HpyCH4III ACNGT 3 cut(s) 125, 163, 950
HpyCH4IV ACGT 2 cut(s) 660, 708
HpyCH4V TGCA 8 cut(s) 42, 166, 203, 668, 876, 1085, 1095, 1284
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 1070, 1082, 1245, 1260
HpyF3I CTNAG 4 cut(s) 93, 234, 684, 846
HpySE526I ACGT 2 cut(s) 660, 708
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 4 cut(s) 101, 180, 696, 1257
LmnI GCTCC 4 cut(s) 87, 839, 847, 1061
Lsp1109I GCAGC 4 cut(s) 54, 367, 1085, 1165
LweI GCATC 2 cut(s) 1018, 1082
MaeI CTAG 2 cut(s) 476, 995
MaeII ACGT 2 cut(s) 660, 708
MaeIII GTNAC 4 cut(s) 112, 125, 1138, 1169
MalI GATC 4 cut(s) 103, 182, 698, 1259
MboI GATC 4 cut(s) 101, 180, 696, 1257
MboII GAAGA 5 cut(s) 262, 427, 649, 665, 939
MhlI GDGCHC 5 cut(s) 84, 92, 844, 1015, 1066
MluCI AATT 7 cut(s) 193, 367, 405, 554, 967, 1020, 1225
MnlI CCTC 8 cut(s) 235, 243, 442, 520, 573, 679, 1126, 1171
Mph1103I ATGCAT 1 cut(s) 1097
MroNI GCCGGC 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 598
MseI TTAA 6 cut(s) 257, 348, 404, 711, 809, 1068
MslI CAYNNNNRTG 3 cut(s) 588, 619, 834
MspA1I CMGCKG 2 cut(s) 380, 788
MspI CCGG 3 cut(s) 33, 56, 538
MspR9I CCNGG 3 cut(s) 295, 440, 958
MvaI CCWGG 3 cut(s) 295, 440, 958
MwoI GCNNNNNNNGC 5 cut(s) 209, 1070, 1082, 1245, 1260
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 4 cut(s) 101, 180, 696, 1257
NgoMIV GCCGGC 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 626
NmuCI GTSAC 2 cut(s) 1138, 1169
NsiI ATGCAT 1 cut(s) 1097
NspI RCATGY 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 957
PdiI GCCGGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 5 cut(s) 580, 599, 734, 1163, 1188
PkrI GCNGC 6 cut(s) 44, 54, 382, 1075, 1155, 1286
Psp124BI GAGCTC 4 cut(s) 84, 844, 1015, 1066
Psp1406I AACGTT 1 cut(s) 660
Psp6I CCWGG 3 cut(s) 293, 438, 956
PspGI CCWGG 3 cut(s) 293, 438, 956
PspN4I GGNNCC 1 cut(s) 626
PspPI GGNCC 2 cut(s) 624, 981
PstI CTGCAG 1 cut(s) 1286
PvuII CAGCTG 2 cut(s) 380, 788
RsaI GTAC 3 cut(s) 27, 682, 1049
RsaNI GTAC 3 cut(s) 26, 681, 1048
RseI CAYNNNNRTG 3 cut(s) 588, 619, 834
SacI GAGCTC 4 cut(s) 84, 844, 1015, 1066
SaqAI TTAA 6 cut(s) 257, 348, 404, 711, 809, 1068
SatI GCNGC 6 cut(s) 43, 53, 381, 1074, 1154, 1285
Sau3AI GATC 4 cut(s) 101, 180, 696, 1257
Sau96I GGNCC 2 cut(s) 624, 981
ScaI AGTACT 1 cut(s) 1049
ScrFI CCNGG 3 cut(s) 295, 440, 958
SduI GDGCHC 5 cut(s) 84, 92, 844, 1015, 1066
SfaNI GCATC 2 cut(s) 1018, 1082
SfcI CTRYAG 3 cut(s) 60, 858, 1282
SinI GGWCC 1 cut(s) 624
SmiMI CAYNNNNRTG 3 cut(s) 588, 619, 834
Sse9I AATT 7 cut(s) 193, 367, 405, 554, 967, 1020, 1225
SsiI CCGC 1 cut(s) 53
SspMI CTAG 2 cut(s) 476, 995
SstI GAGCTC 4 cut(s) 84, 844, 1015, 1066
StyD4I CCNGG 3 cut(s) 293, 438, 956
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 3 cut(s) 125, 163, 950
TaiI ACGT 2 cut(s) 663, 711
TaqI TCGA 2 cut(s) 732, 1090
TasI AATT 7 cut(s) 193, 367, 405, 554, 967, 1020, 1225
TatI WGTACW 1 cut(s) 1047
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 5 cut(s) 580, 599, 734, 1163, 1188
Tru1I TTAA 6 cut(s) 257, 348, 404, 711, 809, 1068
Tru9I TTAA 6 cut(s) 257, 348, 404, 711, 809, 1068
TscAI CASTG 3 cut(s) 92, 168, 205
TseFI GTSAC 2 cut(s) 1138, 1169
TseI GCWGC 5 cut(s) 42, 380, 1073, 1153, 1284
Tsp45I GTSAC 2 cut(s) 1138, 1169
TspRI CASTG 3 cut(s) 92, 168, 205
VpaK11BI GGWCC 1 cut(s) 624
XapI RAATTY 3 cut(s) 193, 554, 1020
XceI RCATGY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 2 cut(s) 476, 995
ZrmI AGTACT 1 cut(s) 1049
Zsp2I ATGCAT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.