Rh1BG303400

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000305
Physical Location & Seq
Forward (+)
43995811 .. 43997346
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG303400.1

Sequence Viewer

Length: 618 bp
ATGAGTGGTGGGCTTCGTACAAGCGTGAAGGGGTTCCTTAATGCAAAACGCCTGGCTTTGTCTGTGGAAACAGATACAGTGCATGAGACGAATGAGACCATCACTCGCAATTTCAGTGCACTCCAAGCTGCTGCTGATTCTCCGGATAAGAAGAAAGCACAAGAGAAGAGCATTGCTTTAACTTCATATCGCCTCATGCCTTCAATTCCTCGGACACAGAATGAGATCTTGCCAAGAAGATTCTTCTATAATGAACTGAAAACAGCGACCTGGAACTTTCATCCTCATAATAAGCTGGGTGAAGGTAGTTTTGGTTCTGTTTTTAAGGGGTGGGTTGATGACAATACAACAACAGCTGCCAAGCCTGGAAGCCTGCATCATCCAAATGTTGTGAAATTGTTGGGTTATTGCTTCGAGGATGACCACCGGCTTCTGGTTTATGAATTTATGGCTAAAGGAAGCTTGGAGTTTCATCTATTTGGATTTGAAATAGGGTTTTCTTACCTTCAACCACTTTCGTGGATCCTGCGTATGAAGATTGCCCTTGGTGCTGCCAAGTCTCTAGCATTTATTCATAATAGTGGGAAAAGTGATCCATCGGGACTTCAAAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

205

Amino Acids

22.95

Weight (kDa)

9.41

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 124 - 193 2e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 142
AclWI GGATC 3 cut(s) 517, 530, 587
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 4 cut(s) 204, 488, 509, 608
AjnI CCWGG 3 cut(s) 51, 269, 364
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AleI CACNNNNGTG 1 cut(s) 517
AluBI AGCT 4 cut(s) 128, 295, 356, 462
AluI AGCT 4 cut(s) 128, 295, 356, 462
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 3 cut(s) 80, 89, 564
Alw44I GTGCAC 1 cut(s) 117
AlwI GGATC 3 cut(s) 517, 530, 587
Aor13HI TCCGGA 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 4 cut(s) 128, 131, 356, 551
ApoI RAATTY 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 4 cut(s) 115, 118, 343, 538
BccI CCATC 2 cut(s) 107, 604
BciT130I CCWGG 3 cut(s) 53, 271, 366
BcoDI GTCTC 3 cut(s) 80, 89, 564
BfaI CTAG 1 cut(s) 563
BglII AGATCT 1 cut(s) 225
BisI GCNGC 4 cut(s) 129, 132, 357, 552
BlsI GCNGC 4 cut(s) 130, 133, 358, 553
Bme1390I CCNGG 3 cut(s) 53, 271, 366
BmiI GGNNCC 2 cut(s) 35, 524
BmrFI CCNGG 3 cut(s) 53, 271, 366
BmsI GCATC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 209, 544
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 3 cut(s) 53, 271, 366
BseDI CCNNGG 2 cut(s) 209, 544
BseGI GGATG 3 cut(s) 280, 379, 424
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 4 cut(s) 115, 118, 343, 538
BseYI CCCAGC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 2 cut(s) 143, 427
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 3 cut(s) 80, 89, 564
BsmBI CGTCTC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 225, 522, 592
BspEI TCCGGA 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 35, 524
BspPI GGATC 3 cut(s) 517, 530, 587
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 209, 544
BssMI GATC 3 cut(s) 225, 522, 592
BssT1I CCWWGG 1 cut(s) 544
Bst2UI CCWGG 3 cut(s) 53, 271, 366
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 374
BstF5I GGATG 3 cut(s) 280, 379, 424
BstKTI GATC 3 cut(s) 228, 525, 595
BstMAI GTCTC 3 cut(s) 80, 89, 564
BstMBI GATC 3 cut(s) 225, 522, 592
BstMWI GCNNNNNNNGC 2 cut(s) 125, 548
BstNI CCWGG 3 cut(s) 53, 271, 366
BstSCI CCNGG 3 cut(s) 51, 269, 364
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 4 cut(s) 115, 118, 343, 538
BstX2I RGATCY 2 cut(s) 225, 522
BstXI CCANNNNNNTGG 1 cut(s) 519
BstYI RGATCY 2 cut(s) 225, 522
BtsCI GGATG 3 cut(s) 280, 379, 424
BtsIMutI CAGTG 2 cut(s) 84, 121
Cac8I GCNNGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 426
Csp6I GTAC 1 cut(s) 18
CviAII CATG 2 cut(s) 83, 196
CviQI GTAC 1 cut(s) 18
DpnI GATC 3 cut(s) 227, 524, 594
DpnII GATC 3 cut(s) 225, 522, 592
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 89
EcoRII CCWGG 3 cut(s) 51, 269, 364
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 2 cut(s) 86, 199
FaiI YATR 9 cut(s) 84, 187, 197, 249, 288, 441, 449, 533, 576
FatI CATG 2 cut(s) 82, 195
Fnu4HI GCNGC 4 cut(s) 129, 132, 357, 552
FokI GGATG 3 cut(s) 267, 366, 431
Fsp4HI GCNGC 4 cut(s) 129, 132, 357, 552
FspBI CTAG 1 cut(s) 563
GluI GCNGC 4 cut(s) 129, 132, 357, 552
GsaI CCCAGC 1 cut(s) 299
HapII CCGG 2 cut(s) 143, 427
Hin1II CATG 2 cut(s) 86, 199
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 2 cut(s) 137, 240
HpaII CCGG 2 cut(s) 143, 427
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 143, 600
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 4 cut(s) 22, 210, 296, 515
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 44, 82, 119, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 548
Hsp92II CATG 2 cut(s) 86, 199
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 225, 522, 592
LguI GCTCTTC 1 cut(s) 161
Lsp1109I GCAGC 4 cut(s) 115, 118, 343, 538
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 563
MalI GATC 3 cut(s) 227, 524, 594
MboI GATC 3 cut(s) 225, 522, 592
MboII GAAGA 5 cut(s) 163, 178, 235, 249, 547
MflI RGATCY 2 cut(s) 225, 522
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 4 cut(s) 109, 204, 395, 443
MnlI CCTC 4 cut(s) 203, 219, 294, 409
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 3 cut(s) 39, 179, 324
MslI CAYNNNNRTG 3 cut(s) 384, 517, 579
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 2 cut(s) 143, 427
MspR9I CCNGG 3 cut(s) 53, 271, 366
MvaI CCWGG 3 cut(s) 53, 271, 366
MwoI GCNNNNNNNGC 2 cut(s) 125, 548
NdeII GATC 3 cut(s) 225, 522, 592
NlaIII CATG 2 cut(s) 86, 199
NlaIV GGNNCC 2 cut(s) 35, 524
OliI CACNNNNGTG 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 137, 240
PkrI GCNGC 4 cut(s) 130, 133, 358, 553
Psp6I CCWGG 3 cut(s) 51, 269, 364
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 3 cut(s) 51, 269, 364
PspN4I GGNNCC 2 cut(s) 35, 524
PsrI GAACNNNNNNTAC 2 cut(s) 298, 330
PsuI RGATCY 2 cut(s) 225, 522
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 3 cut(s) 384, 517, 579
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 39, 179, 324
SatI GCNGC 4 cut(s) 129, 132, 357, 552
Sau3AI GATC 3 cut(s) 225, 522, 592
ScrFI CCNGG 3 cut(s) 53, 271, 366
SduI GDGCHC 1 cut(s) 121
SetI ASST 7 cut(s) 130, 272, 297, 307, 358, 464, 507
SfaNI GCATC 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 384, 517, 579
Sse9I AATT 4 cut(s) 109, 204, 395, 443
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 3 cut(s) 51, 269, 364
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 414
TasI AATT 4 cut(s) 109, 204, 395, 443
TfiI GAWTC 2 cut(s) 137, 240
Tru1I TTAA 3 cut(s) 39, 179, 324
Tru9I TTAA 3 cut(s) 39, 179, 324
TscAI CASTG 2 cut(s) 84, 121
TseI GCWGC 4 cut(s) 128, 131, 356, 551
TspDTI ATGAA 7 cut(s) 174, 267, 269, 456, 461, 548, 563
TspRI CASTG 2 cut(s) 84, 121
VneI GTGCAC 1 cut(s) 117
XapI RAATTY 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.