RLG00000027286
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
10319029 .. 10320291
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027286

Sequence Viewer

Length: 561 bp
ATGCCGGACTTCATTATTGTTGGAACAGGGGGCTCTTACTCTCAATCACTGTCATGGATGCTTCGTATGAAGATTGCCTTTGGTGCTGCTAAGGTGCTTGCATTTCTTCACAGTGGTGAGGAAACTTCTGGTAGACTTGCTCACACCATATTTTCATTGGAAAATAACAGACCTACAATGCGAAACTCTGTAGTTTTTGTCTGGCCAAGGATGGGCCAGAAGGTGATAGGACATCTGGATATGCAGCTCCGGAATATGTGGCCACAGGACACGAACTCGCCAACTGGGAAATCCAATTTGGTTGAGTGGAGTCAATGGACCAATTCTGACATTGTCAGCAAACATAAAGTTCTCCAAATTATCGATGCTCGTGTTGAAGGACAGTACTCTGTTGCTAGAGCTCTTAAAGCAGCTGACCTTGCATTTCGCTGCCTATCAACAGATGCCAAGCTTAGGCCAAACATGAATGATGTGGTAAAAGTTTTGGAGGAGCTTCAGGAATCTGGTGACATGTCTCATAACGAACCTCGCCACAATCCTCATGCCAGTTCAAGTAACTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

20.85

Weight (kDa)

8.79

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 249
AcoI YGGCCR 2 cut(s) 203, 260
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 212, 453
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 2 cut(s) 377, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 5 cut(s) 247, 401, 413, 451, 493
AluI AGCT 5 cut(s) 247, 401, 413, 451, 493
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 519
Aor13HI TCCGGA 1 cut(s) 249
AoxI GGCC 4 cut(s) 203, 214, 260, 455
ApeKI GCWGC 4 cut(s) 86, 244, 410, 429
AspS9I GGNCC 2 cut(s) 214, 318
AsuHPI GGTGA 3 cut(s) 128, 235, 518
AvaII GGWCC 1 cut(s) 318
BalI TGGCCA 2 cut(s) 205, 262
BanII GRGCYC 2 cut(s) 35, 403
BauI CACGAG 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 4 cut(s) 73, 256, 416, 422
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 4 cut(s) 87, 245, 411, 430
BlsI GCNGC 4 cut(s) 88, 246, 412, 431
BmcAI AGTACT 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 214, 318
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 48, 355, 433
BmuI ACTGGG 1 cut(s) 294
Bpu10I CCTNAGC 2 cut(s) 90, 452
Bsa29I ATCGAT 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 453
Bse1I ACTGG 2 cut(s) 289, 546
BseAI TCCGGA 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 63, 216
BseLI CCNNNNNNNGG 2 cut(s) 212, 453
BseNI ACTGG 2 cut(s) 289, 546
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 4 cut(s) 73, 256, 416, 422
BshFI GGCC 4 cut(s) 205, 216, 262, 457
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 2 cut(s) 5, 250
BslI CCNNNNNNNGG 2 cut(s) 212, 453
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 4 cut(s) 205, 216, 262, 457
Bsp1286I GDGCHC 2 cut(s) 35, 403
Bsp13I TCCGGA 1 cut(s) 249
BspANI GGCC 4 cut(s) 205, 216, 262, 457
BspDI ATCGAT 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 249
BsrI ACTGG 2 cut(s) 289, 546
BssECI CCNNGG 1 cut(s) 206
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 51, 113, 384
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 90, 452
BstF5I GGATG 2 cut(s) 63, 216
BstMAI GTCTC 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 83, 407, 419
BstNSI RCATGY 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 4 cut(s) 73, 256, 416, 422
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 4 cut(s) 205, 216, 262, 457
BsuTUI ATCGAT 1 cut(s) 363
BtsCI GGATG 2 cut(s) 63, 216
BtsIMutI CAGTG 2 cut(s) 47, 118
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 214, 318
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 385
CviAII CATG 4 cut(s) 54, 463, 511, 542
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 90, 452
EaeI YGGCCR 2 cut(s) 203, 260
Ecl136II GAGCTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 2 cut(s) 35, 403
Eco47I GGWCC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 2 cut(s) 35, 403
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 4 cut(s) 57, 466, 514, 545
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 4 cut(s) 53, 462, 510, 541
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 87, 245, 411, 430
FokI GGATG 2 cut(s) 70, 223
FriOI GRGCYC 2 cut(s) 35, 403
Fsp4HI GCNGC 4 cut(s) 87, 245, 411, 430
FspBI CTAG 1 cut(s) 396
GluI GCNGC 4 cut(s) 87, 245, 411, 430
HaeIII GGCC 4 cut(s) 205, 216, 262, 457
HapII CCGG 2 cut(s) 5, 250
Hin1II CATG 4 cut(s) 57, 466, 514, 545
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 2 cut(s) 310, 500
HpaII CCGG 2 cut(s) 5, 250
HphI GGTGA 3 cut(s) 128, 235, 518
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 236, 250, 497
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 214, 371
HpyCH4III ACNGT 3 cut(s) 51, 113, 384
HpyCH4V TGCA 3 cut(s) 101, 244, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 407, 419
HpyF3I CTNAG 2 cut(s) 90, 452
Hsp92II CATG 4 cut(s) 57, 466, 514, 545
Kpn2I TCCGGA 1 cut(s) 249
LmnI GCTCC 2 cut(s) 252, 490
Lsp1109I GCAGC 4 cut(s) 73, 256, 416, 422
LweI GCATC 3 cut(s) 48, 355, 433
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 506, 554
MboII GAAGA 2 cut(s) 82, 98
MhlI GDGCHC 2 cut(s) 35, 403
MlsI TGGCCA 2 cut(s) 205, 262
MluCI AATT 3 cut(s) 295, 322, 357
MluNI TGGCCA 2 cut(s) 205, 262
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 4 cut(s) 112, 481, 537, 549
Mox20I TGGCCA 2 cut(s) 205, 262
MroI TCCGGA 1 cut(s) 249
MscI TGGCCA 2 cut(s) 205, 262
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 2 cut(s) 52, 114
Msp20I TGGCCA 2 cut(s) 205, 262
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 2 cut(s) 5, 250
MwoI GCNNNNNNNGC 3 cut(s) 83, 407, 419
NlaIII CATG 4 cut(s) 57, 466, 514, 545
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 1 cut(s) 514
OliI CACNNNNGTG 1 cut(s) 114
PciI ACATGT 1 cut(s) 510
PfeI GAWTC 1 cut(s) 500
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 4 cut(s) 88, 246, 412, 431
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PscI ACATGT 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 403
PspPI GGNCC 2 cut(s) 214, 318
PsyI GACNNNGTC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 2 cut(s) 52, 114
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 87, 245, 411, 430
Sau96I GGNCC 2 cut(s) 214, 318
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 1 cut(s) 319
SduI GDGCHC 2 cut(s) 35, 403
SfaNI GCATC 3 cut(s) 48, 355, 433
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 52, 114
Sse9I AATT 3 cut(s) 295, 322, 357
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 403
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 51, 113, 384
TaqI TCGA 1 cut(s) 363
TasI AATT 3 cut(s) 295, 322, 357
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 54, 118
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 4 cut(s) 86, 244, 410, 429
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 3 cut(s) 83, 144, 479
TspRI CASTG 2 cut(s) 54, 118
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 318
XceI RCATGY 1 cut(s) 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 1 cut(s) 396
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.