Rmu_sc0009775.1_g000004
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009775.1
OG0000305
Physical Location & Seq
Forward (+)
17123 .. 18774
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009775.1_g000004.1.cds

Sequence Viewer

Length: 969 bp
atggcgacctggaacttccatcctgataatatggtgggcgaaggtggttttggttctgttttcaaggggtgggttgatgactcatcagcagctgccaaccctggtaagggcatgttgattgctgtgaagaggattaacaaagaaggtttcttgggtcacgagcaatggttggctgaaatttactacctaggaaggctgcgtcatccaaatcttgtgaaattgttgggttattgctttgaagatggtcatcggcttctggtgtttgaatttatgtctcgtggcggcttggataatcatatatttggaagggattcttgtcttcaaccactttcatggaacctgcgtatgaagatttcccttgaggctgctaatgttctagcatttcttcacaatggtgaggaaacagtagtccatcgggacattacaagttctaatatcctgttggattcagatggacccacaggtgataaaagccatgtttcaacagcagtgatggggacacatgggtatgctgctcctgagtatattgctacaggtcatttaactgccaaatgtgatgtatatgggtttggagttgtgatgctcgaaatgctgtctggaagacgtagtctggaccaaagcctgccgactgtgcaacagaatttagtcgactgggccaaaccttacctcgccagcaaacgcagagttctcaaagtttttgatccttgtttaaaaggccagtactctgtggctggagcttttaaagcagctaatcttgcaaaacaatgcttatcagaagaacctgagtttaggccaaacatgactgaggtagtaaaagcattggagcagcttcagggacctgaagacatgaagggtttgaagattcctcaaaatgagccttgccagagtcctcgtgccaattcaagcaatcgcaggagaagcacaagttggatcagcttcatgccatctgcttcccgcagctatacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

35.74

Weight (kDa)

8.16

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 648
AciI CCGC 2 cut(s) 282, 955
AclWI GGATC 2 cut(s) 695, 938
AcsI RAATTY 3 cut(s) 177, 266, 640
AcuI CTGAAG 2 cut(s) 815, 861
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 106, 107
AgsI TTSAA 7 cut(s) 64, 239, 266, 323, 483, 859, 903
AjnI CCWGG 2 cut(s) 8, 100
AjuI GAANNNNNNNTTGG 4 cut(s) 33, 65, 910, 942
AleI CACNNNNGTG 1 cut(s) 393
AluBI AGCT 6 cut(s) 92, 737, 749, 829, 936, 960
AluI AGCT 6 cut(s) 92, 737, 749, 829, 936, 960
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 2 cut(s) 695, 938
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 3 cut(s) 654, 715, 791
ApeKI GCWGC 8 cut(s) 89, 92, 196, 365, 512, 746, 826, 957
ApoI RAATTY 3 cut(s) 177, 266, 640
Asp700I GAANNNNTTC 1 cut(s) 310
AspA2I CCTAGG 1 cut(s) 187
AspS9I GGNCC 4 cut(s) 455, 613, 654, 836
AsuHPI GGTGA 2 cut(s) 407, 476
AvaII GGWCC 3 cut(s) 455, 613, 836
AvrII CCTAGG 1 cut(s) 187
BauI CACGAG 3 cut(s) 158, 276, 891
BbsI GAAGAC 3 cut(s) 311, 607, 849
BbvI GCAGC 7 cut(s) 79, 101, 183, 352, 499, 758, 838
BccI CCATC 6 cut(s) 27, 236, 420, 446, 487, 952
BciT130I CCWGG 2 cut(s) 10, 102
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 2 cut(s) 188, 377
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 513, 747, 827, 958
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 9 cut(s) 91, 94, 198, 284, 367, 514, 748, 828, 959
BmcAI AGTACT 1 cut(s) 722
Bme1390I CCNGG 2 cut(s) 10, 102
Bme18I GGWCC 3 cut(s) 455, 613, 836
BmgT120I GGNCC 4 cut(s) 455, 613, 654, 836
BmiI GGNNCC 3 cut(s) 338, 457, 837
BmrFI CCNGG 2 cut(s) 10, 102
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 3 cut(s) 311, 607, 849
BpmI CTGGAG 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 100, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 107
Bse1I ACTGG 2 cut(s) 656, 718
Bse3DI GCAATG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 2 cut(s) 10, 102
BseDI CCNNGG 2 cut(s) 100, 187
BseGI GGATG 2 cut(s) 19, 202
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 106, 107
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 3 cut(s) 510, 774, 795
BseNI ACTGG 2 cut(s) 656, 718
BseXI GCAGC 7 cut(s) 79, 101, 183, 352, 499, 758, 838
BshFI GGCC 3 cut(s) 656, 717, 793
BslFI GGGAC 3 cut(s) 431, 511, 849
BslI CCNNNNNNNGG 2 cut(s) 106, 107
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 3 cut(s) 431, 511, 849
BsnI GGCC 3 cut(s) 656, 717, 793
Bsp143I GATC 2 cut(s) 700, 930
BspACI CCGC 2 cut(s) 282, 955
BspANI GGCC 3 cut(s) 656, 717, 793
BspCNI CTCAG 3 cut(s) 511, 775, 796
BspLI GGNNCC 3 cut(s) 338, 457, 837
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 2 cut(s) 695, 938
BsrDI GCAATG 1 cut(s) 170
BsrI ACTGG 2 cut(s) 656, 718
BssECI CCNNGG 2 cut(s) 100, 187
BssMI GATC 2 cut(s) 700, 930
BssSI CACGAG 3 cut(s) 158, 276, 891
BssT1I CCWWGG 1 cut(s) 187
Bst2BI CACGAG 3 cut(s) 158, 276, 891
Bst2UI CCWGG 2 cut(s) 10, 102
Bst4CI ACNGT 2 cut(s) 406, 631
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 623, 673
BstDEI CTNAG 3 cut(s) 519, 783, 804
BstF5I GGATG 2 cut(s) 19, 202
BstKTI GATC 2 cut(s) 703, 933
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 2 cut(s) 700, 930
BstMWI GCNNNNNNNGC 5 cut(s) 589, 631, 743, 755, 918
BstNI CCWGG 2 cut(s) 10, 102
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 8, 100
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 7 cut(s) 79, 101, 183, 352, 499, 758, 838
BstV2I GAAGAC 3 cut(s) 311, 607, 849
BstXI CCANNNNNNTGG 1 cut(s) 333
BsuRI GGCC 3 cut(s) 656, 717, 793
BtsCI GGATG 2 cut(s) 19, 202
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 623, 673
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 4 cut(s) 455, 613, 654, 836
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 721
CviAII CATG 7 cut(s) 112, 333, 476, 503, 799, 847, 940
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 3 cut(s) 519, 783, 804
DpnI GATC 2 cut(s) 702, 932
DpnII GATC 2 cut(s) 700, 930
DraI TTTAAA 2 cut(s) 711, 742
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 187
Eco47I GGWCC 3 cut(s) 455, 613, 836
Eco57I CTGAAG 2 cut(s) 815, 861
EcoO109I RGGNCCY 1 cut(s) 836
EcoRII CCWGG 2 cut(s) 8, 100
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 7 cut(s) 115, 336, 479, 506, 802, 850, 943
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 3 cut(s) 431, 511, 849
FatI CATG 7 cut(s) 111, 332, 475, 502, 798, 846, 939
FauI CCCGC 1 cut(s) 962
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 513, 747, 827, 958
FokI GGATG 2 cut(s) 6, 189
Fsp4HI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 513, 747, 827, 958
FspBI CTAG 2 cut(s) 188, 377
GluI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 513, 747, 827, 958
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 3 cut(s) 656, 717, 793
HgaI GACGC 1 cut(s) 188
Hin1II CATG 7 cut(s) 115, 336, 479, 506, 802, 850, 943
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 5 cut(s) 80, 311, 446, 862, 886
HphI GGTGA 2 cut(s) 407, 476
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 2 cut(s) 451, 775
Hpy188III TCNNGA 6 cut(s) 23, 158, 416, 518, 597, 611
Hpy8I GTNNAC 1 cut(s) 649
HpyAV CCTTC 5 cut(s) 35, 137, 186, 300, 844
HpyCH4III ACNGT 2 cut(s) 406, 631
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 2 cut(s) 634, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 589, 631, 743, 755, 918
HpyF3I CTNAG 3 cut(s) 519, 783, 804
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 7 cut(s) 115, 336, 479, 506, 802, 850, 943
Kzo9I GATC 2 cut(s) 700, 930
LmnI GCTCC 3 cut(s) 520, 734, 823
Lsp1109I GCAGC 7 cut(s) 79, 101, 183, 352, 499, 758, 838
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 188, 377
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 702, 932
MboI GATC 2 cut(s) 700, 930
MboII GAAGA 9 cut(s) 139, 251, 311, 361, 377, 612, 788, 854, 871
MluCI AATT 5 cut(s) 177, 218, 266, 640, 898
MlyI GAGTC 2 cut(s) 74, 895
MmeI TCCRAC 2 cut(s) 423, 908
MnlI CCTC 7 cut(s) 123, 355, 391, 677, 799, 876, 900
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 4 cut(s) 135, 542, 710, 741
MslI CAYNNNNRTG 3 cut(s) 331, 393, 507
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 10, 102
MvaI CCWGG 2 cut(s) 10, 102
MwoI GCNNNNNNNGC 5 cut(s) 589, 631, 743, 755, 918
NdeII GATC 2 cut(s) 700, 930
NlaIII CATG 7 cut(s) 115, 336, 479, 506, 802, 850, 943
NlaIV GGNNCC 3 cut(s) 338, 457, 837
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 311, 446, 862
PflFI GACNNNGTC 1 cut(s) 606
PkrI GCNGC 9 cut(s) 91, 94, 198, 284, 367, 514, 748, 828, 959
PleI GAGTC 2 cut(s) 74, 894
PpsI GAGTC 2 cut(s) 74, 894
PpuMI RGGWCCY 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 2 cut(s) 8, 100
PspGI CCWGG 2 cut(s) 8, 100
PspN4I GGNNCC 3 cut(s) 338, 457, 837
PspPI GGNCC 4 cut(s) 455, 613, 654, 836
PspPPI RGGWCCY 1 cut(s) 836
PstNI CAGNNNCTG 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 606
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 3 cut(s) 331, 393, 507
SalI GTCGAC 1 cut(s) 647
SaqAI TTAA 4 cut(s) 135, 542, 710, 741
SatI GCNGC 9 cut(s) 90, 93, 197, 283, 366, 513, 747, 827, 958
Sau3AI GATC 2 cut(s) 700, 930
Sau96I GGNCC 4 cut(s) 455, 613, 654, 836
ScaI AGTACT 1 cut(s) 722
SchI GAGTC 2 cut(s) 74, 895
ScrFI CCNGG 2 cut(s) 10, 102
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 3 cut(s) 455, 613, 836
SmiMI CAYNNNNRTG 3 cut(s) 331, 393, 507
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 5 cut(s) 177, 218, 266, 640, 898
SsiI CCGC 2 cut(s) 282, 955
SspMI CTAG 2 cut(s) 188, 377
StyD4I CCNGG 2 cut(s) 8, 100
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 406, 631
TaiI ACGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 585, 648
TasI AATT 5 cut(s) 177, 218, 266, 640, 898
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 3 cut(s) 311, 446, 862
Tru1I TTAA 4 cut(s) 135, 542, 710, 741
Tru9I TTAA 4 cut(s) 135, 542, 710, 741
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 8 cut(s) 89, 92, 196, 365, 512, 746, 826, 957
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 321, 362, 863, 928
TspRI CASTG 1 cut(s) 495
Tth111I GACNNNGTC 1 cut(s) 606
VpaK11BI GGWCC 3 cut(s) 455, 613, 836
XapI RAATTY 3 cut(s) 177, 266, 640
XceI RCATGY 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 2 cut(s) 188, 377
ZrmI AGTACT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.