Rroxscaffold_4G00289340

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000305
Physical Location & Seq
Reverse (-)
9967446 .. 9971865
4420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289340.1

Sequence Viewer

Length: 1125 bp
ATGAATGAGATCATCAATACAAATTTCACTGCACTCCAAGCTCACAATGTGCCTTCAACTCCTCAGACAGAGGGTGAAATCTTGTTGAAAAGATTTCTCTTCAATGAACTGAAAATAGCAACCTGGAACTTTCATCCTGATAATATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGTAATTCATCAACAGCTGCCAAGACTGGTAGTGGCATGTTAATTGCTGTGAAGACGATTAACCAAGAAGGTTTCCAGGGTCAAGAGGAATGGTTGACAGAAATTTACTATCTAGGAAGGTTGCGACATCCAAATCTTGTGAAGTTGTTGGGTTATTGCTTTGAGGACAACCGCCGGCTCCTGGTTTATGAATTTATGCCTCATGGAAGCTTGGAGATTCATCTATATGGAAGGGATTCTTACCTTGAACCACTTTCATGGACCCTGCGTATGAAGATTGCCCTTGGTGTTGCCAAGGTTCTTGCATTTCTTCATGGTACTGAGGGAAAAGTGATCCATCGGGACGTTAAAACTTCTAATATTCTGCTCGATTCAACCTACAATGCCAAACTCTCTGATTTTGGTTTGGCAAAGGATGTACCAGCTGGTGATGAAAGCCATGTCTTAACAAGGGTGGTGGGGACACAAGGGTATGCAGCTCCTGAGTATATTTCTACAGGTCATTTATCCTGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTAGATAATAATCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTACCTTGCCAGCAAAAGCAGAGCTCTCAAAATTTTTGATGCTCGTACTGAAGGCCAGTACTCTCTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTCGGGAGTCTCCCAAAATGAGCCTTGCCAAACTCCTTGTGCCAATTCAAGCAATCGCAGGAGAAGCACAAGCTGGATCAGCTTCAGGCCATGTGCTTCCCGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

374

Amino Acids

41.68

Weight (kDa)

7.14

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 47 - 323 3e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 48 - 326 1.4e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39660 AT3G55450 AT3G55450
fragaria_vesca FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22540 FvH4_7g22550 FvH4_7g22550 FvH4_7g22590 FvH4_7g22592 FvH4_7g22592 FvH4_7g22593 FvH4_7g22593 FvH4_7g22593
malus_domestica MD01G1134700.v1.1 MD07G1199400.v1.1
prunus_persica Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1 Prupe.2G236100_v2.0.a1
pyrus_communis pycom01g15540 pycom07g18630
rosa_chinensis RchiOBHm_Chr1g0367221 RchiOBHm_Chr1g0367231 RchiOBHm_Chr1g0367251 RchiOBHm_Chr1g0367261 RchiOBHm_Chr1g0367311 RchiOBHm_Chr1g0367321 RchiOBHm_Chr1g0367351 RchiOBHm_Chr1g0367401 RchiOBHm_Chr1g0367411 RchiOBHm_Chr1g0367581 RchiOBHm_Chr5g0029531
rosa_laevigata RLG00000001400 RLG00000024338 RLG00000027271 RLG00000027274 RLG00000027277 RLG00000027278 RLG00000027280 RLG00000027281 RLG00000027282 RLG00000027285 RLG00000027286 RLG00000027288 RLG00000033176
rosa_multiflora Rmu_sc0002690.1_g000002 Rmu_sc0004181.1_g000007 Rmu_sc0008470.1_g000013 Rmu_sc0008470.1_g000015 Rmu_sc0009775.1_g000001 Rmu_sc0009775.1_g000003 Rmu_sc0009775.1_g000004 Rmu_sc0009775.1_g000005 Rmu_sc0011000.1_g000008 Rmu_sc0014291.1_g000001 Rmu_sc0014291.1_g000005 Rmu_sc0014291.1_g000008
rosa_roxburghii Rroxscaffold_1G00050440 Rroxscaffold_4G00289340 Rroxscaffold_4G00289350 Rroxscaffold_4G00289380 Rroxscaffold_4G00289400 Rroxscaffold_4G00289410 Rroxscaffold_4G00289450 Rroxscaffold_4G00289490 Rroxscaffold_4G00289500 Rroxscaffold_4G00289510 Rroxscaffold_6G00420130 Rroxscaffold_6G00421370
rosa_rugosa Rorug01G0335600.1 Rorug01G0335700 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335800 Rorug01G0335900 Rorug01G0335900 Rorug01G0336000 Rorug01G0336000 Rorug05G0114700 Rorug05G0114800
rosa_samantha Rh1AG342300 Rh1AG342500 Rh1AG342700 Rh1BG302700 Rh1BG303000 Rh1BG303100 Rh1BG303400 Rh1BG303500 Rh1BG303800 Rh1BG304100 Rh1CG319200 Rh1CG319400 Rh1CG319800 Rh1CG319900 Rh1DG335300 Rh1DG335500 Rh1DG335900 Rh1DG336200 Rh2AG106400 Rh3DG307700 Rh4CG281300 Rh5AG206700 Rh5CG227400 Rh5DG209100 Rh7CG338300
rosa_wichuraiana Rw1G030420 Rw1G030430 Rw1G030460 Rw1G030470 Rw1G030480 Rw1G030510 Rw1G030520 Rw5G018800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 364, 1111
AclWI GGATC 2 cut(s) 520, 1094
AcsI RAATTY 4 cut(s) 22, 294, 383, 849
AcuI CTGAAG 3 cut(s) 888, 971, 1078
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 4 cut(s) 511, 612, 865, 878
AfiI CCNNNNNNNGG 2 cut(s) 373, 945
AgsI TTSAA 8 cut(s) 57, 88, 103, 440, 567, 743, 806, 1059
AjnI CCWGG 4 cut(s) 122, 267, 372, 785
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
Alw21I GWGCWC 2 cut(s) 844, 895
Alw26I GTCTC 1 cut(s) 1024
AlwI GGATC 2 cut(s) 520, 1094
AlwNI CAGNNNCTG 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 938
AoxI GGCC 4 cut(s) 810, 871, 947, 1097
ApeKI GCWGC 5 cut(s) 209, 668, 902, 982, 1113
ApoI RAATTY 4 cut(s) 22, 294, 383, 849
Asp700I GAANNNNTTC 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 453, 810
AsuHPI GGTGA 3 cut(s) 86, 632, 1010
AvaI CYCGRG 1 cut(s) 938
AvaII GGWCC 1 cut(s) 453
BanII GRGCYC 2 cut(s) 844, 895
BbsI GAAGAC 2 cut(s) 251, 763
Bbv12I GWGCWC 2 cut(s) 844, 895
BbvI GCAGC 4 cut(s) 196, 680, 914, 994
BccI CCATC 2 cut(s) 185, 537
BciT130I CCWGG 4 cut(s) 124, 269, 374, 787
BcoDI GTCTC 1 cut(s) 1024
BfaI CTAG 2 cut(s) 305, 767
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 5 cut(s) 210, 669, 903, 983, 1114
BlsI GCNGC 5 cut(s) 211, 670, 904, 984, 1115
BmcAI AGTACT 1 cut(s) 878
Bme1390I CCNGG 4 cut(s) 124, 269, 374, 787
Bme18I GGWCC 1 cut(s) 453
BmeT110I CYCGRG 1 cut(s) 938
BmgT120I GGNCC 2 cut(s) 453, 810
BmiI GGNNCC 2 cut(s) 371, 455
BmrFI CCNGG 4 cut(s) 124, 269, 374, 787
BmsI GCATC 2 cut(s) 847, 911
BpiI GAAGAC 2 cut(s) 251, 763
Bsa29I ATCGAT 1 cut(s) 919
BsaBI GATNNNNATC 2 cut(s) 774, 925
BsaJI CCNNGG 5 cut(s) 268, 475, 486, 785, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 945
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 223, 874
Bse8I GATNNNNATC 2 cut(s) 774, 925
BseBI CCWGG 4 cut(s) 124, 269, 374, 787
BseCI ATCGAT 1 cut(s) 919
BseDI CCNNGG 5 cut(s) 268, 475, 486, 785, 786
BseGI GGATG 3 cut(s) 133, 319, 613
BseJI GATNNNNATC 2 cut(s) 774, 925
BseLI CCNNNNNNNGG 2 cut(s) 373, 945
BseMII CTCAG 3 cut(s) 77, 504, 666
BseNI ACTGG 2 cut(s) 223, 874
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 196, 680, 914, 994
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 4 cut(s) 812, 873, 949, 1099
BshVI ATCGAT 1 cut(s) 919
BsiHKAI GWGCWC 2 cut(s) 844, 895
BsiHKCI CYCGRG 1 cut(s) 938
BsiSI CCGG 1 cut(s) 367
BslFI GGGAC 2 cut(s) 548, 667
BslI CCNNNNNNNGG 2 cut(s) 373, 945
BsmAI GTCTC 1 cut(s) 1024
BsmFI GGGAC 2 cut(s) 548, 667
BsnI GGCC 4 cut(s) 812, 873, 949, 1099
BsoBI CYCGRG 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 844, 895
Bsp143I GATC 3 cut(s) 9, 525, 1086
BspACI CCGC 2 cut(s) 364, 1111
BspANI GGCC 4 cut(s) 812, 873, 949, 1099
BspCNI CTCAG 3 cut(s) 76, 505, 667
BspDI ATCGAT 1 cut(s) 919
BspLI GGNNCC 2 cut(s) 371, 455
BspPI GGATC 2 cut(s) 520, 1094
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 2 cut(s) 223, 874
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 5 cut(s) 268, 475, 486, 785, 786
BssMI GATC 3 cut(s) 9, 525, 1086
BssT1I CCWWGG 2 cut(s) 475, 486
Bst2UI CCWGG 4 cut(s) 124, 269, 374, 787
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 368, 829
BstDEI CTNAG 3 cut(s) 63, 513, 675
BstF5I GGATG 3 cut(s) 133, 319, 613
BstKTI GATC 3 cut(s) 12, 528, 1089
BstMAI GTCTC 1 cut(s) 1024
BstMBI GATC 3 cut(s) 9, 525, 1086
BstMWI GCNNNNNNNGC 5 cut(s) 38, 899, 911, 1074, 1089
BstNI CCWGG 4 cut(s) 124, 269, 374, 787
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 4 cut(s) 122, 267, 372, 785
BstSFI CTRYAG 1 cut(s) 687
BstV1I GCAGC 4 cut(s) 196, 680, 914, 994
BstV2I GAAGAC 2 cut(s) 251, 763
BstXI CCANNNNNNTGG 1 cut(s) 450
Bsu15I ATCGAT 1 cut(s) 919
BsuRI GGCC 4 cut(s) 812, 873, 949, 1099
BsuTUI ATCGAT 1 cut(s) 919
BtsCI GGATG 3 cut(s) 133, 319, 613
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 368, 829
CaiI CAGNNNCTG 1 cut(s) 674
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 453, 810
ClaI ATCGAT 1 cut(s) 919
Csp6I GTAC 4 cut(s) 510, 611, 864, 877
CspCI CAANNNNNGTGG 2 cut(s) 630, 665
CviAII CATG 8 cut(s) 229, 395, 450, 506, 632, 955, 1003, 1101
CviQI GTAC 4 cut(s) 510, 611, 864, 877
DdeI CTNAG 3 cut(s) 63, 513, 675
DpnI GATC 3 cut(s) 11, 527, 1088
DpnII GATC 3 cut(s) 9, 525, 1086
DraIII CACNNNGTG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 2 cut(s) 842, 893
Eco130I CCWWGG 2 cut(s) 475, 486
Eco24I GRGCYC 2 cut(s) 844, 895
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 2 cut(s) 842, 893
Eco57I CTGAAG 3 cut(s) 888, 971, 1078
Eco88I CYCGRG 1 cut(s) 938
EcoICRI GAGCTC 2 cut(s) 842, 893
EcoRII CCWGG 4 cut(s) 122, 267, 372, 785
EcoT14I CCWWGG 2 cut(s) 475, 486
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 844, 895
ErhI CCWWGG 2 cut(s) 475, 486
FaeI CATG 8 cut(s) 232, 398, 453, 509, 635, 958, 1006, 1104
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 2 cut(s) 548, 667
FatI CATG 8 cut(s) 228, 394, 449, 505, 631, 954, 1002, 1100
FauI CCCGC 1 cut(s) 1118
Fnu4HI GCNGC 5 cut(s) 210, 669, 903, 983, 1114
FokI GGATG 3 cut(s) 120, 306, 620
FriOI GRGCYC 2 cut(s) 844, 895
Fsp4HI GCNGC 5 cut(s) 210, 669, 903, 983, 1114
FspBI CTAG 2 cut(s) 305, 767
GluI GCNGC 5 cut(s) 210, 669, 903, 983, 1114
HaeIII GGCC 4 cut(s) 812, 873, 949, 1099
HapII CCGG 1 cut(s) 367
Hin1II CATG 8 cut(s) 232, 398, 453, 509, 635, 958, 1006, 1104
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 5 cut(s) 409, 428, 563, 992, 1017
HpaII CCGG 1 cut(s) 367
HphI GGTGA 3 cut(s) 86, 632, 1010
Hpy166II GTNNAC 2 cut(s) 288, 782
Hpy188I TCNGA 2 cut(s) 66, 589
Hpy188III TCNNGA 8 cut(s) 137, 275, 533, 674, 753, 767, 989, 1014
Hpy8I GTNNAC 2 cut(s) 288, 782
HpyAV CCTTC 5 cut(s) 63, 254, 303, 417, 863
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 6 cut(s) 32, 497, 668, 705, 914, 924
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 899, 911, 1074, 1089
HpyF3I CTNAG 3 cut(s) 63, 513, 675
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 8 cut(s) 232, 398, 453, 509, 635, 958, 1006, 1104
KroI GCCGGC 1 cut(s) 366
KroNI GCCGGC 1 cut(s) 368
Kzo9I GATC 3 cut(s) 9, 525, 1086
LmnI GCTCC 3 cut(s) 375, 676, 890
Lsp1109I GCAGC 4 cut(s) 196, 680, 914, 994
LweI GCATC 2 cut(s) 847, 911
MaeI CTAG 2 cut(s) 305, 767
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 967, 998
MalI GATC 3 cut(s) 11, 527, 1088
MboI GATC 3 cut(s) 9, 525, 1086
MboII GAAGA 5 cut(s) 91, 256, 478, 494, 768
MhlI GDGCHC 2 cut(s) 844, 895
MluCI AATT 8 cut(s) 22, 196, 234, 294, 383, 796, 849, 1054
MlyI GAGTC 1 cut(s) 1026
MnlI CCTC 8 cut(s) 64, 72, 271, 349, 402, 508, 955, 1000
Mph1103I ATGCAT 1 cut(s) 926
MroNI GCCGGC 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 6 cut(s) 177, 233, 252, 540, 638, 897
MslI CAYNNNNRTG 2 cut(s) 417, 448
MspA1I CMGCKG 2 cut(s) 209, 617
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 4 cut(s) 124, 269, 374, 787
MvaI CCWGG 4 cut(s) 124, 269, 374, 787
MwoI GCNNNNNNNGC 5 cut(s) 38, 899, 911, 1074, 1089
NaeI GCCGGC 1 cut(s) 368
NdeII GATC 3 cut(s) 9, 525, 1086
NgoMIV GCCGGC 1 cut(s) 366
NlaIII CATG 8 cut(s) 232, 398, 453, 509, 635, 958, 1006, 1104
NlaIV GGNNCC 2 cut(s) 371, 455
NmuCI GTSAC 2 cut(s) 967, 998
NsiI ATGCAT 1 cut(s) 926
NspI RCATGY 1 cut(s) 232
PasI CCCWGGG 1 cut(s) 786
PdiI GCCGGC 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 4 cut(s) 409, 428, 563, 992
PkrI GCNGC 5 cut(s) 211, 670, 904, 984, 1115
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
Psp124BI GAGCTC 2 cut(s) 844, 895
Psp6I CCWGG 4 cut(s) 122, 267, 372, 785
PspGI CCWGG 4 cut(s) 122, 267, 372, 785
PspN4I GGNNCC 2 cut(s) 371, 455
PspPI GGNCC 2 cut(s) 453, 810
PstNI CAGNNNCTG 1 cut(s) 674
PvuII CAGCTG 2 cut(s) 209, 617
RsaI GTAC 4 cut(s) 511, 612, 865, 878
RsaNI GTAC 4 cut(s) 510, 611, 864, 877
RseI CAYNNNNRTG 2 cut(s) 417, 448
SacI GAGCTC 2 cut(s) 844, 895
SaqAI TTAA 6 cut(s) 177, 233, 252, 540, 638, 897
SatI GCNGC 5 cut(s) 210, 669, 903, 983, 1114
Sau3AI GATC 3 cut(s) 9, 525, 1086
Sau96I GGNCC 2 cut(s) 453, 810
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 1 cut(s) 1026
ScrFI CCNGG 4 cut(s) 124, 269, 374, 787
SduI GDGCHC 2 cut(s) 844, 895
SfaNI GCATC 2 cut(s) 847, 911
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 417, 448
Sse9I AATT 8 cut(s) 22, 196, 234, 294, 383, 796, 849, 1054
SsiI CCGC 2 cut(s) 364, 1111
SspI AATATT 1 cut(s) 553
SspMI CTAG 2 cut(s) 305, 767
SstI GAGCTC 2 cut(s) 844, 895
StyD4I CCNGG 4 cut(s) 122, 267, 372, 785
StyI CCWWGG 2 cut(s) 475, 486
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 561, 919
TasI AATT 8 cut(s) 22, 196, 234, 294, 383, 796, 849, 1054
TatI WGTACW 1 cut(s) 876
TfiI GAWTC 4 cut(s) 409, 428, 563, 992
Tru1I TTAA 6 cut(s) 177, 233, 252, 540, 638, 897
Tru9I TTAA 6 cut(s) 177, 233, 252, 540, 638, 897
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 967, 998
TseI GCWGC 5 cut(s) 209, 668, 902, 982, 1113
Tsp45I GTSAC 2 cut(s) 967, 998
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 4 cut(s) 22, 294, 383, 849
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 305, 767
ZrmI AGTACT 1 cut(s) 878
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.