Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000431

Physical Location & Seq

Genomic Coordinates Reverse (-)

5573700 .. 5575910

Gene Structure 2211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGACAACGATCAACAAGCAAGTCGTGTTACTTGATTACGTAACCGGTTTCGCCAAGGAATCCGACCTTGTAATCACCTCCACCACCATCGATCTTAGGGTGCTAAAGGGATCTATGACGGCGTTGGTGAAGAATCTCTACTTGTCTTGTGATCCTTACATGCGAAATCGTATGAGGAAACCTGATCCTCTGAGCCCTGCTACTGCTCAGTCCTTCACTCCCGGCAAGCCTATCTCAGGGTTTGGAGTGTCTAAAGTGATAGATTCTGGACACTCAGATTACGAAGAAGGTGACTTAATTTGGGGAGCAGTAGGATGGGAAGAGTACAGTGTTATTACACCAATTCCTAATCTTCACTTCAAGATCCATCATACCAATTTTCCTTTATCTTACTACACAGGACTTCTTGGTATGCCTGGTATGACCGCGTATGTTGGGTTTTACGAGATATGTACTCCAAAGAAAGGAGATACTGTGTTTGTGTCGGCTGCATCTGGCGCGGTTGGTCAGCTTGTAGGACAATTTGCTAAGTTGATGGGTTGTTATGTTGTTGGAAGCGCTGGGAGTAAAGAAAAGGTTGATCTCCTCAAGAACAAGTTTGGATTCGATGATGCCTTCAACTACAAGGAAGAACACAATCTTATTGGTGCCCTAAAAAGGTGTTTCCCTGAAGGCATTGACATATACTTTGAGAACGTAGGAGGCAAGATGCTGGATGCAGTGATCTTAAACATGAGACCACACGGCCGTATCGCGGCATGTGGGATGATCTCACAGTACAATCTGAAGAATCCGGAAGGTATATACGGCCTCTCGCTCATTACATACAAACGAATCCGTATTGAAGGGTTCAACTGTTTCGATTACTTCCACAAATACTCGGAGTTCTTGGAGTTTGTGGTTCCGTATATAAAAGAAGGGAAGATAAAGTATGTGGAAGATGTTGCTGATGGACTCGAGAGTGCTCCTGCTGCTCTCGTTGGACTCTTTCACGGTAAAAACGTCGGGAAACAACTTGTCGTGGTTTCGCCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0032440 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

346

Amino Acids

38.13

Weight (kDa)

7.07

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	7 - 113	3.4e-19	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	168 - 301	7.5e-24	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	202 - 339	3.5e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca	FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica	MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica	Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis	pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis	RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata	RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora	Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa	Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha	Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana	Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	650
AccII	CGCG	3 cut(s)	431, 503, 758
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	3 cut(s)	429, 503, 758
AclWI	GGATC	4 cut(s)	121, 149, 182, 361
AcoI	YGGCCR	1 cut(s)	748
AcuI	CTGAAG	2 cut(s)	693, 809
AfaI	GTAC	3 cut(s)	329, 457, 782
AfeI	AGCGCT	1 cut(s)	562
AfiI	CCNNNNNNNGG	4 cut(s)	239, 467, 660, 757
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	4 cut(s)	364, 622, 848, 856
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	1 cut(s)	514
AluI	AGCT	1 cut(s)	514
Alw21I	GWGCWC	1 cut(s)	970
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	4 cut(s)	121, 149, 182, 361
Ama87I	CYCGRG	1 cut(s)	959
Aor13HI	TCCGGA	1 cut(s)	796
Aor51HI	AGCGCT	1 cut(s)	562
AoxI	GGCC	2 cut(s)	748, 811
ApeKI	GCWGC	2 cut(s)	491, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
AsiGI	ACCGGT	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	503, 563
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	70, 142, 305
AvaI	CYCGRG	1 cut(s)	959
BaeGI	GKGCMC	1 cut(s)	655
BaeI	ACNNNNGTAYC	2 cut(s)	736, 769
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	2 cut(s)	478, 961
BccI	CCATC	5 cut(s)	98, 312, 378, 532, 947
BceAI	ACGGC	4 cut(s)	138, 735, 763, 826
BciT130I	CCWGG	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	733
BfoI	RGCGCY	1 cut(s)	564
BisI	GCNGC	3 cut(s)	492, 759, 975
BlsI	GCNGC	3 cut(s)	493, 760, 976
Bme1390I	CCNGG	2 cut(s)	225, 420
BmeT110I	CYCGRG	1 cut(s)	959
BmiI	GGNNCC	2 cut(s)	652, 906
BmrFI	CCNGG	2 cut(s)	225, 420
BmsI	GCATC	4 cut(s)	503, 604, 702, 709
BpuEI	CTTGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	733
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	2 cut(s)	47, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 467, 660, 757
Bse118I	RCCGGY	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	420
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	323, 724, 774
BseLI	CCNNNNNNNGG	4 cut(s)	239, 467, 660, 757
BseMII	CTCAG	4 cut(s)	185, 224, 252, 291
BseRI	GAGGAG	1 cut(s)	578
BseSI	GKGCMC	1 cut(s)	655
BseX3I	CGGCCG	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	478, 961
BseYI	CCCAGC	1 cut(s)	563
Bsh1236I	CGCG	3 cut(s)	431, 503, 758
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	2 cut(s)	750, 813
BshNI	GGYRCC	1 cut(s)	650
BshTI	ACCGGT	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	959
BsiSI	CCGG	3 cut(s)	48, 225, 797
BslI	CCNNNNNNNGG	4 cut(s)	239, 467, 660, 757
BsmAI	GTCTC	1 cut(s)	733
BsnI	GGCC	2 cut(s)	750, 813
Bso31I	GGTCTC	1 cut(s)	733
BsoBI	CYCGRG	1 cut(s)	959
Bsp1286I	GDGCHC	3 cut(s)	200, 655, 970
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
BspACI	CCGC	3 cut(s)	429, 503, 758
BspANI	GGCC	2 cut(s)	750, 813
BspCNI	CTCAG	4 cut(s)	186, 223, 251, 290
BspDI	ATCGAT	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	3 cut(s)	431, 503, 758
BspLI	GGNNCC	2 cut(s)	652, 906
BspPI	GGATC	4 cut(s)	121, 149, 182, 361
BspT107I	GGYRCC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	5 cut(s)	332, 478, 780, 860, 998
Bst6I	CTCTTC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	6 cut(s)	98, 194, 210, 238, 277, 531
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	323, 724, 774
BstFNI	CGCG	3 cut(s)	431, 503, 758
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	503, 563
BstKTI	GATC	9 cut(s)	15, 97, 116, 157, 190, 369, 586, 729, 774
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 974
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	2 cut(s)	166, 765
BstSCI	CCNGG	2 cut(s)	223, 418
BstSLI	GKGCMC	1 cut(s)	655
BstSNI	TACGTA	1 cut(s)	43
BstUI	CGCG	3 cut(s)	431, 503, 758
BstV1I	GCAGC	2 cut(s)	478, 961
BstX2I	RGATCY	2 cut(s)	113, 366
BstYI	RGATCY	2 cut(s)	113, 366
BstZI	CGGCCG	1 cut(s)	748
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	750, 813
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	323, 724, 774
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	2 cut(s)	337, 729
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	2 cut(s)	503, 563
Cfr10I	RCCGGY	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	328, 456, 781
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	3 cut(s)	163, 736, 762
CviJI	RGCY	6 cut(s)	198, 232, 491, 514, 750, 813
CviKI_1	RGCY	6 cut(s)	198, 232, 491, 514, 750, 813
CviQI	GTAC	3 cut(s)	328, 456, 781
DdeI	CTNAG	6 cut(s)	98, 194, 210, 238, 277, 531
DpnI	GATC	9 cut(s)	14, 96, 115, 156, 189, 368, 585, 728, 773
DpnII	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
EaeI	YGGCCR	1 cut(s)	748
EagI	CGGCCG	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	748
Eco105I	TACGTA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	733
Eco47III	AGCGCT	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	748
Eco57I	CTGAAG	2 cut(s)	693, 809
Eco88I	CYCGRG	1 cut(s)	959
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	166, 739, 765
FatI	CATG	3 cut(s)	162, 735, 761
Fnu4HI	GCNGC	3 cut(s)	492, 759, 975
FokI	GGATG	3 cut(s)	330, 731, 781
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	492, 759, 975
GlaI	GCGC	2 cut(s)	502, 562
GluI	GCNGC	3 cut(s)	492, 759, 975
GsaI	CCCAGC	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	750, 813
HapII	CCGG	3 cut(s)	48, 225, 797
HhaI	GCGC	2 cut(s)	503, 563
Hin1II	CATG	3 cut(s)	166, 739, 765
Hin6I	GCGC	2 cut(s)	501, 561
HinP1I	GCGC	2 cut(s)	501, 561
HinfI	GANTC	8 cut(s)	62, 136, 266, 606, 793, 837, 957, 987
HpaII	CCGG	3 cut(s)	48, 225, 797
HphI	GGTGA	3 cut(s)	70, 142, 305
Hpy188I	TCNGA	5 cut(s)	67, 195, 280, 789, 886
Hpy188III	TCNNGA	6 cut(s)	270, 364, 592, 797, 961, 1009
Hpy99I	CGWCG	1 cut(s)	1010
HpyAV	CCTTC	7 cut(s)	226, 284, 628, 668, 794, 842, 914
HpyCH4III	ACNGT	5 cut(s)	332, 478, 780, 860, 998
HpyCH4IV	ACGT	3 cut(s)	42, 699, 1005
HpyCH4V	TGCA	2 cut(s)	494, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 974
HpyF3I	CTNAG	6 cut(s)	98, 194, 210, 238, 277, 531
HpySE526I	ACGT	3 cut(s)	42, 699, 1005
Hsp92II	CATG	3 cut(s)	166, 739, 765
HspAI	GCGC	2 cut(s)	501, 561
Kpn2I	TCCGGA	1 cut(s)	796
Kzo9I	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
LmnI	GCTCC	2 cut(s)	308, 973
Lsp1109I	GCAGC	2 cut(s)	478, 961
LweI	GCATC	4 cut(s)	503, 604, 702, 709
MaeII	ACGT	3 cut(s)	42, 699, 1005
MaeIII	GTNAC	3 cut(s)	30, 43, 293
MalI	GATC	9 cut(s)	14, 96, 115, 156, 189, 368, 585, 728, 773
MboI	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
MboII	GAAGA	8 cut(s)	145, 299, 335, 347, 644, 802, 937, 953
MflI	RGATCY	2 cut(s)	113, 366
MhlI	GDGCHC	3 cut(s)	200, 655, 970
MluCI	AATT	4 cut(s)	300, 345, 379, 524
MlyI	GAGTC	2 cut(s)	951, 981
MmeI	TCCRAC	3 cut(s)	90, 535, 964
MnlI	CCTC	6 cut(s)	91, 171, 201, 599, 698, 824
MroI	TCCGGA	1 cut(s)	796
MseI	TTAA	2 cut(s)	299, 731
MspI	CCGG	3 cut(s)	48, 225, 797
MspR9I	CCNGG	2 cut(s)	225, 420
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	3 cut(s)	431, 503, 758
MwoI	GCNNNNNNNGC	2 cut(s)	500, 974
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
NlaIII	CATG	3 cut(s)	166, 739, 765
NlaIV	GGNNCC	2 cut(s)	652, 906
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	2 cut(s)	166, 765
PaeR7I	CTCGAG	1 cut(s)	959
PcsI	WCGNNNNNNNCGW	1 cut(s)	1002
PfeI	GAWTC	6 cut(s)	62, 136, 266, 606, 793, 837
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	493, 760, 976
PleI	GAGTC	2 cut(s)	951, 981
PpsI	GAGTC	2 cut(s)	951, 981
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	652, 906
PsuI	RGATCY	2 cut(s)	113, 366
RsaI	GTAC	3 cut(s)	329, 457, 782
RsaNI	GTAC	3 cut(s)	328, 456, 781
SaqAI	TTAA	2 cut(s)	299, 731
SatI	GCNGC	3 cut(s)	492, 759, 975
Sau3AI	GATC	9 cut(s)	12, 94, 113, 154, 187, 366, 583, 726, 771
SchI	GAGTC	2 cut(s)	951, 981
ScrFI	CCNGG	2 cut(s)	225, 420
SduI	GDGCHC	3 cut(s)	200, 655, 970
SfaNI	GCATC	4 cut(s)	503, 604, 702, 709
Sfr274I	CTCGAG	1 cut(s)	959
SlaI	CTCGAG	1 cut(s)	959
SmlI	CTYRAG	2 cut(s)	590, 959
SmoI	CTYRAG	2 cut(s)	590, 959
SnaBI	TACGTA	1 cut(s)	43
Sse9I	AATT	4 cut(s)	300, 345, 379, 524
SsiI	CCGC	3 cut(s)	429, 503, 758
StyD4I	CCNGG	2 cut(s)	223, 418
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	5 cut(s)	332, 478, 780, 860, 998
TaiI	ACGT	3 cut(s)	45, 702, 1008
TaqI	TCGA	4 cut(s)	93, 609, 864, 960
TasI	AATT	4 cut(s)	300, 345, 379, 524
TatI	WGTACW	3 cut(s)	327, 455, 780
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	6 cut(s)	62, 136, 266, 606, 793, 837
Tru1I	TTAA	2 cut(s)	299, 731
Tru9I	TTAA	2 cut(s)	299, 731
TscAI	CASTG	2 cut(s)	337, 729
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	491, 974
Tsp45I	GTSAC	1 cut(s)	293
TspGWI	ACGGA	2 cut(s)	830, 897
TspRI	CASTG	2 cut(s)	337, 729
XagI	CCTNNNNNAGG	1 cut(s)	237
XceI	RCATGY	2 cut(s)	166, 765
XhoI	CTCGAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.