Rroxscaffold_2G00155420

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000431
Physical Location & Seq
Forward (+)
91808693 .. 91811883
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155420.1

Sequence Viewer

Length: 417 bp
ATGCAGCCTTTGAGTGGGTATGGAGTGGGTGAAGTTGTAGATTCTGGGCACCCAGACTTTAAGGAAGGTGACCTTGTCAGGGGAATAACCAAATGGGAACATTACACCTTAATCACACAACCAGAAAGCCTCCATAAGATCCAACACGCTGACGTTCCTCTTTCCTACTATACCGGTGTACTTGGAATGCCTGGGTTGACTGCCTATGCAGGCTTCAATGAAGTTTGTTCTCCTAAGAAGGGAGAATATGTCTTCATTTCAGCGGCATCAGGTGCCGTTGGTCAGCTGGTTGGACAATTAGCAAAATTGTTGGGTTGTTATGTCGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGACCTTTTGAAGAATAAGTTAAATTTTGATGAAGCTTTCAACTATAAGGAGAGCATGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

138

Amino Acids

14.9

Weight (kDa)

5.75

Isoelectric Point (pI)

15.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 3 - 46 5.6e-08 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 92 - 135 6.7e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 48, 272
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 3 cut(s) 14, 79, 239
AgeI ACCGGT 1 cut(s) 173
AgsI TTSAA 3 cut(s) 217, 364, 394
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 2 cut(s) 286, 389
AluI AGCT 2 cut(s) 286, 389
AlwI GGATC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 376
AsiGI ACCGGT 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 41, 80
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 2 cut(s) 48, 272
BbsI GAAGAC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 192
BisI GCNGC 2 cut(s) 5, 264
BlsI GCNGC 2 cut(s) 6, 265
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 50, 274
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 79, 239
Bse118I RCCGGY 1 cut(s) 173
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 14, 79, 239
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 16
BshNI GGYRCC 2 cut(s) 48, 272
BshTI ACCGGT 1 cut(s) 173
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 14, 79, 239
BsmI GAATGC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 50, 274
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 2 cut(s) 48, 272
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 68
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 1 cut(s) 409
CviJI RGCY 5 cut(s) 7, 129, 213, 286, 389
CviKI_1 RGCY 5 cut(s) 7, 129, 213, 286, 389
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 412
FaiI YATR 8 cut(s) 21, 135, 171, 207, 249, 321, 399, 410
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 5, 264
Fsp4HI GCNGC 2 cut(s) 5, 264
GluI GCNGC 2 cut(s) 5, 264
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 412
HincII GTYRAC 2 cut(s) 198, 355
HindII GTYRAC 2 cut(s) 198, 355
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 41, 80
Hpy166II GTNNAC 3 cut(s) 179, 198, 355
Hpy8I GTNNAC 3 cut(s) 179, 198, 355
HpyAV CCTTC 2 cut(s) 59, 232
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 4, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 412
Kzo9I GATC 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 275
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 2 cut(s) 244, 376
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 296, 305, 376
MmeI TCCRAC 3 cut(s) 166, 271, 307
MnlI CCTC 2 cut(s) 140, 168
MseI TTAA 4 cut(s) 60, 110, 374, 415
MspA1I CMGCKG 2 cut(s) 263, 286
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 2 cut(s) 50, 274
NmuCI GTSAC 1 cut(s) 68
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 2 cut(s) 6, 265
Psp6I CCWGG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 50, 274
PsuI RGATCY 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 60, 110, 374, 415
SatI GCNGC 2 cut(s) 5, 264
Sau3AI GATC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 51
SetI ASST 9 cut(s) 70, 75, 110, 156, 274, 288, 354, 360, 391
SfaNI GCATC 1 cut(s) 275
Sse9I AATT 3 cut(s) 296, 305, 376
SsiI CCGC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 156
TasI AATT 3 cut(s) 296, 305, 376
TatI WGTACW 1 cut(s) 178
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 4 cut(s) 60, 110, 374, 415
Tru9I TTAA 4 cut(s) 60, 110, 374, 415
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 234, 244, 399
Tth111I GACNNNGTC 1 cut(s) 74
XapI RAATTY 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.