Rh2DG003700

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000431
Physical Location & Seq
Forward (+)
238997 .. 241816
2820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG003700.1

Sequence Viewer

Length: 492 bp
ATGGCGGAGTTTGAAGTGAAGAACAAGCAAGTTGACCTTTTGAAGAATAAGTTAAATTTTGATGAAGCTTTCAACTATAAGGAAGAGCATGACTTAACCGCAGCTCTGAAAAGGTATTTTCCAGAAGGCATTGACATATACTTTGAGAATGTTGGTGGAAAATTTCTGGATGCAGTCCTGCTCAACATGAGAGTCCACGGCCGGATTGCAGTGTGTGGAATGATTTCACAGTACAATCTTGAAAAGCCTGAAGGTGTGACAAATTTGATGTGCCTTGTATACAAGCGGATTCATTTGCAAGGATTTACAGTCCGCGATTACTATCACCTCTATCCCAAGTACCTGGACTATATTCTGCCTTGCATAAGAGAGGGAAAGGTGATATACTTGGAAGACATTGCTGAAGGCCTTGAGAATGGACCATCAGCGTTGGTAGGACTCTTCAGTGGTCGCAATGTTGGCAAACAACTAGTTTCAATTTCCTACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

163

Amino Acids

18.77

Weight (kDa)

6.09

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 7 - 116 1.2e-13 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 315
AciI CCGC 4 cut(s) 5, 99, 286, 313
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 3 cut(s) 55, 161, 262
AcuI CTGAAG 3 cut(s) 270, 423, 427
AfaI GTAC 2 cut(s) 233, 341
AgsI TTSAA 5 cut(s) 14, 43, 73, 242, 477
AhlI ACTAGT 1 cut(s) 469
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 2 cut(s) 68, 104
AluI AGCT 2 cut(s) 68, 104
AoxI GGCC 2 cut(s) 199, 406
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 3 cut(s) 55, 161, 262
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 317, 391
AvaII GGWCC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 1 cut(s) 470
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 2 cut(s) 396, 460
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 321
BseMI GCAATG 2 cut(s) 396, 460
BseNI ACTGG 1 cut(s) 487
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 201, 408
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 202
BsnI GGCC 2 cut(s) 201, 408
BspACI CCGC 4 cut(s) 5, 99, 286, 313
BspANI GGCC 2 cut(s) 201, 408
BspFNI CGCG 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 78
BsrDI GCAATG 2 cut(s) 396, 460
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 196
BssNAI GTATAC 1 cut(s) 280
Bst1107I GTATAC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 231, 310
Bst6I CTCTTC 2 cut(s) 78, 446
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 315
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 399
BstXI CCANNNNNNTGG 1 cut(s) 343
BstZ17I GTATAC 1 cut(s) 280
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 2 cut(s) 201, 408
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 216, 451
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 232, 340
CviAII CATG 2 cut(s) 89, 187
CviJI RGCY 5 cut(s) 68, 104, 201, 247, 408
CviKI_1 RGCY 5 cut(s) 68, 104, 201, 247, 408
CviQI GTAC 2 cut(s) 232, 340
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 78, 446
EarI CTCTTC 2 cut(s) 78, 446
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 419
Eco52I CGGCCG 1 cut(s) 199
Eco57I CTGAAG 3 cut(s) 270, 423, 427
EcoRII CCWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 92, 190
FaiI YATR 9 cut(s) 78, 90, 137, 139, 188, 280, 351, 365, 385
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FatI CATG 2 cut(s) 88, 186
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 201, 408
HapII CCGG 1 cut(s) 202
Hin1II CATG 2 cut(s) 92, 190
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 3 cut(s) 192, 289, 438
HpaII CCGG 1 cut(s) 202
HphI GGTGA 2 cut(s) 317, 391
Hpy166II GTNNAC 3 cut(s) 34, 196, 280
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 122, 167, 239
Hpy8I GTNNAC 3 cut(s) 34, 196, 280
HpyAV CCTTC 3 cut(s) 119, 245, 398
HpyCH4III ACNGT 2 cut(s) 231, 310
HpyCH4V TGCA 4 cut(s) 173, 209, 298, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 92, 190
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 7 cut(s) 135, 152, 191, 215, 261, 329, 356
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 5 cut(s) 31, 55, 95, 404, 433
MluCI AATT 4 cut(s) 55, 161, 262, 477
MlyI GAGTC 2 cut(s) 201, 432
MnlI CCTC 2 cut(s) 338, 364
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 2 cut(s) 53, 95
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 459
NlaIII CATG 2 cut(s) 92, 190
NmuCI GTSAC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 289
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 200, 432
PpsI GAGTC 2 cut(s) 200, 432
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspPI GGNCC 1 cut(s) 419
RsaI GTAC 2 cut(s) 233, 341
RsaNI GTAC 2 cut(s) 232, 340
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 53, 95
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 2 cut(s) 201, 432
ScrFI CCNGG 1 cut(s) 344
SetI ASST 8 cut(s) 39, 70, 106, 116, 256, 330, 345, 381
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 4 cut(s) 55, 161, 262, 477
SseBI AGGCCT 1 cut(s) 408
SsiI CCGC 4 cut(s) 5, 99, 286, 313
SspMI CTAG 1 cut(s) 470
StuI AGGCCT 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 231, 310
TasI AATT 4 cut(s) 55, 161, 262, 477
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 53, 95
Tru9I TTAA 2 cut(s) 53, 95
TscAI CASTG 2 cut(s) 216, 451
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 78, 281
TspRI CASTG 2 cut(s) 216, 451
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 3 cut(s) 55, 161, 262
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.