Rroxscaffold_2G00134060

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000431
Physical Location & Seq
Forward (+)
71531129 .. 71534182
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134060.1

Sequence Viewer

Length: 1053 bp
ATGGCGAGTGGTGAGGGGGAAGTGATGAGGAACAAGCAGGTGATATTCAGGGATTATGTGACTGGCAATCCCAAAGAGTCGGACATGTACGTGACAGACAGTAGTACCATTAAGCTCAAGGTTCCACAGGGCTCAGTCGCGGTGCTGGTCAAGAACCTTTACTTGGCGTGTGACCCTTATTTGAGGATCCGAATGGGGCGAATTGAAGGTTCTAGTGTCTTCACTTCCTTCACCCCTGGCTTTCCATTGAGTGGATTTGGAGTGGCTAAAGTCTTGGATTCCGGGCATCCGGAGTTCAAGGAAGGTGACTTGGTTTGGGGAACAACCGGATGGGAAGAGTATAGTCTCATCACAGAACCAGAACAACTCTTCAAGATCCACCACACTGACGTGCCCCTTTCCTACTATACTGGACTTCTTGGTGTGCCGGGTATGACTGCCTTTGTCGGTTTCCATGAAGTGTGCTCGCCTAAAAGAGGAGATTCTGTGTTCGTTTCTGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTGATGGGGTGCTATGTTGTTGGAAGTGTCGGAAGCAAAGAGAAGGTCGATCTACTAAAGAACAAGCTAGGGTTTGATGAGGCTTTCAATTATAAGGAAGAGCATGACCTTGATGCTGCTTTGAAAAGGTACTTCCCAAAAGGCATTGATATTTACTTCGAGAATGTTGGTGGTAAAATGCTGGATGCAGTCCTTCTCAACATGAGACCTCATGGCCATATTGCCGTGTGTGGAATGATCTCACATTACAATCTCAATCAGCCACAAGGCTTTAGCAATCTCATCTCTCTCATCTACAATCGGATTCGTATGGAAGGCTTCGTTGTTTTCGATTACTTCCATCTCTATCCCAAGTTCTTGGACATGGTGTTGCCTTACATCAGAGAAGGAAAAATAGTGTATCTGGAAGATATAGTTGAAGGCCTTGAGAGTGGTCCGGCTGCTCTTGTAGGGCTCTTTAGTGGTCGTAATGTCGGAAAACAAGTAGTTTTGGTTGCTCCAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

350

Amino Acids

38.63

Weight (kDa)

5.89

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 12 - 126 2.6e-20 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 171 - 304 7.8e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 204 - 344 9e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 1 cut(s) 140
AclWI GGATC 3 cut(s) 181, 194, 370
AcoI YGGCCR 1 cut(s) 757
AfaI GTAC 3 cut(s) 89, 106, 674
AfiI CCNNNNNNNGG 3 cut(s) 163, 251, 476
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 6 cut(s) 206, 298, 373, 631, 667, 962
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 5 cut(s) 115, 506, 523, 610, 1046
AluI AGCT 5 cut(s) 115, 506, 523, 610, 1046
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 350, 742
AlwI GGATC 3 cut(s) 181, 194, 370
AlwNI CAGNNNCTG 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 2 cut(s) 757, 964
ApeKI GCWGC 4 cut(s) 500, 503, 659, 983
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AspS9I GGNCC 1 cut(s) 977
AsuC2I CCSGG 2 cut(s) 283, 429
AsuHPI GGTGA 4 cut(s) 23, 52, 223, 317
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BalI TGGCCA 1 cut(s) 759
BamHI GGATCC 1 cut(s) 186
BanII GRGCYC 2 cut(s) 134, 999
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 4 cut(s) 512, 515, 646, 970
BccI CCATC 3 cut(s) 324, 541, 891
BceAI ACGGC 1 cut(s) 752
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 2 cut(s) 283, 429
BcoDI GTCTC 2 cut(s) 350, 742
BfaI CTAG 2 cut(s) 213, 611
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 4 cut(s) 501, 504, 660, 984
BlsI GCNGC 4 cut(s) 502, 505, 661, 985
Bme1390I CCNGG 3 cut(s) 237, 283, 429
Bme18I GGWCC 1 cut(s) 977
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 2 cut(s) 123, 188
BmrFI CCNGG 3 cut(s) 237, 283, 429
BmsI GCATC 3 cut(s) 295, 646, 718
BpiI GAAGAC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 1026
BpuEI CTTGAG 2 cut(s) 101, 989
BpuMI CCSGG 2 cut(s) 283, 429
BsaAI YACGTR 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 289, 326
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 251, 476
Bse1I ACTGG 2 cut(s) 67, 415
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 3 cut(s) 286, 335, 733
BseLI CCNNNNNNNGG 3 cut(s) 163, 251, 476
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 67, 415
BseRI GAGGAG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 4 cut(s) 512, 515, 646, 970
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 759, 966
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 5 cut(s) 282, 290, 327, 428, 980
BslI CCNNNNNNNGG 3 cut(s) 163, 251, 476
BsmAI GTCTC 2 cut(s) 350, 742
BsnI GGCC 2 cut(s) 759, 966
Bso31I GGTCTC 1 cut(s) 742
Bsp1286I GDGCHC 4 cut(s) 134, 396, 467, 999
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 4 cut(s) 186, 375, 592, 780
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 759, 966
BspCNI CTCAG 1 cut(s) 146
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 123, 188
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 3 cut(s) 181, 194, 370
BspQI GCTCTTC 1 cut(s) 636
BspTNI GGTCTC 1 cut(s) 742
BsrI ACTGG 2 cut(s) 67, 415
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 4 cut(s) 186, 375, 592, 780
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 3 cut(s) 330, 374, 636
BstAPI GCANNNNNTGC 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 286, 335, 733
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 4 cut(s) 189, 378, 595, 783
BstMAI GTCTC 2 cut(s) 350, 742
BstMBI GATC 4 cut(s) 186, 375, 592, 780
BstMWI GCNNNNNNNGC 2 cut(s) 509, 529
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 235, 281, 427
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 396
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 4 cut(s) 512, 515, 646, 970
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 2 cut(s) 186, 375
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 2 cut(s) 186, 375
BsuRI GGCC 2 cut(s) 759, 966
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 3 cut(s) 286, 335, 733
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 977
Csp6I GTAC 3 cut(s) 88, 105, 673
CviAII CATG 6 cut(s) 85, 455, 647, 745, 755, 907
CviQI GTAC 3 cut(s) 88, 105, 673
DdeI CTNAG 1 cut(s) 133
DpnI GATC 4 cut(s) 188, 377, 594, 782
DpnII GATC 4 cut(s) 186, 375, 592, 780
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 330, 374, 636
EarI CTCTTC 3 cut(s) 330, 374, 636
Eco147I AGGCCT 1 cut(s) 966
Eco24I GRGCYC 2 cut(s) 134, 999
Eco31I GGTCTC 1 cut(s) 742
Eco47I GGWCC 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 134, 999
FaeI CATG 6 cut(s) 88, 458, 650, 748, 758, 910
FatI CATG 6 cut(s) 84, 454, 646, 744, 754, 906
Fnu4HI GCNGC 4 cut(s) 501, 504, 660, 984
FokI GGATG 3 cut(s) 273, 342, 740
FriOI GRGCYC 2 cut(s) 134, 999
Fsp4HI GCNGC 4 cut(s) 501, 504, 660, 984
FspBI CTAG 2 cut(s) 213, 611
GluI GCNGC 4 cut(s) 501, 504, 660, 984
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 2 cut(s) 759, 966
HapII CCGG 5 cut(s) 282, 290, 327, 428, 980
Hin1II CATG 6 cut(s) 88, 458, 650, 748, 758, 910
HinfI GANTC 4 cut(s) 77, 278, 482, 847
HpaII CCGG 5 cut(s) 282, 290, 327, 428, 980
HphI GGTGA 4 cut(s) 23, 52, 223, 317
Hpy188I TCNGA 6 cut(s) 82, 191, 575, 846, 926, 1019
Hpy188III TCNNGA 5 cut(s) 151, 290, 373, 703, 947
HpyAV CCTTC 8 cut(s) 200, 238, 296, 580, 746, 851, 923, 956
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 2 cut(s) 90, 390
HpyCH4V TGCA 3 cut(s) 500, 539, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 529
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 2 cut(s) 90, 390
Hsp92II CATG 6 cut(s) 88, 458, 650, 748, 758, 910
Kpn2I TCCGGA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 186, 375, 592, 780
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 4 cut(s) 512, 515, 646, 970
LweI GCATC 3 cut(s) 295, 646, 718
MaeI CTAG 2 cut(s) 213, 611
MaeII ACGT 2 cut(s) 90, 390
MaeIII GTNAC 4 cut(s) 58, 91, 170, 305
MalI GATC 4 cut(s) 188, 377, 594, 782
MboI GATC 4 cut(s) 186, 375, 592, 780
MboII GAAGA 5 cut(s) 211, 347, 361, 653, 962
MflI RGATCY 2 cut(s) 186, 375
MhlI GDGCHC 4 cut(s) 134, 396, 467, 999
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 3 cut(s) 201, 533, 631
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 4 cut(s) 60, 544, 553, 997
MnlI CCTC 6 cut(s) 7, 21, 177, 470, 616, 762
Mox20I TGGCCA 1 cut(s) 759
MroI TCCGGA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 759
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 89, 389
Msp20I TGGCCA 1 cut(s) 759
MspA1I CMGCKG 2 cut(s) 506, 1046
MspI CCGG 5 cut(s) 282, 290, 327, 428, 980
MspR9I CCNGG 3 cut(s) 237, 283, 429
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 509, 529
NciI CCSGG 2 cut(s) 283, 429
NdeII GATC 4 cut(s) 186, 375, 592, 780
NlaIII CATG 6 cut(s) 88, 458, 650, 748, 758, 910
NlaIV GGNNCC 2 cut(s) 123, 188
NmuCI GTSAC 4 cut(s) 58, 91, 170, 305
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 966
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 870
PfeI GAWTC 3 cut(s) 278, 482, 847
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 4 cut(s) 502, 505, 661, 985
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 91
PscI ACATGT 1 cut(s) 84
PsiI TTATAA 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 123, 188
PspPI GGNCC 1 cut(s) 977
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 186, 375
PvuII CAGCTG 2 cut(s) 506, 1046
RsaI GTAC 3 cut(s) 89, 106, 674
RsaNI GTAC 3 cut(s) 88, 105, 673
RseI CAYNNNNRTG 2 cut(s) 89, 389
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 4 cut(s) 501, 504, 660, 984
Sau3AI GATC 4 cut(s) 186, 375, 592, 780
Sau96I GGNCC 1 cut(s) 977
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 237, 283, 429
SduI GDGCHC 4 cut(s) 134, 396, 467, 999
SfaNI GCATC 3 cut(s) 295, 646, 718
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 2 cut(s) 89, 389
SmlI CTYRAG 2 cut(s) 116, 968
SmoI CTYRAG 2 cut(s) 116, 968
Sse9I AATT 3 cut(s) 201, 533, 631
SseBI AGGCCT 1 cut(s) 966
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 213, 611
StuI AGGCCT 1 cut(s) 966
StyD4I CCNGG 3 cut(s) 235, 281, 427
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 2 cut(s) 93, 393
TaqI TCGA 3 cut(s) 591, 702, 873
TasI AATT 3 cut(s) 201, 533, 631
TfiI GAWTC 3 cut(s) 278, 482, 847
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 4 cut(s) 58, 91, 170, 305
TseI GCWGC 4 cut(s) 500, 503, 659, 983
Tsp45I GTSAC 4 cut(s) 58, 91, 170, 305
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 977
XagI CCTNNNNNAGG 1 cut(s) 474
XceI RCATGY 1 cut(s) 88
XspI CTAG 2 cut(s) 213, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.