Rh2BG008800

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000431
Physical Location & Seq
Reverse (-)
609907 .. 611763
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG008800.1

Sequence Viewer

Length: 1062 bp
ATGGCAGGTGAAGTAGCAGTGAGGAATAAGCAGGTGATATTGAGGGACTATGTGTCTGGTTTTCCCAAAGAGTCAGACATGTATGTCACAACTGATAGCACAGTAAGTCTGAAGGTTCCAGCAGAGACGAGAAATGCTGTTCTACTCAAGAACCTCTACTTGTCCTGCGATCCCATGATGCAATTCCTCATTAGGAATAACTCTAAAATGAGAAAATACGTCTATTGCACTCCTGGCTCTCCAATTCGTGGGTTTGGTGTGTCTCAAGTTGTGGACTCGAGTCATCCAGAGTATAAACAAGGTGATTTGGTGTGGGGGTTAACCACATGGGAAGAGTACAGCCTCATCACAGATATGGTCCCTGAAACCTCACTCGTTAAAATACACCACACTGATGTCCCTCTTTCTTACTATACTGGACTTCTTGGCATGGCTGGTAAGACTGCTTATGCTGGATTCTTTGAAGTATGTCCTCCTAAGAAAGGAGACAAGGTGTTGGTCTCTGCAGCATCTGGTGCAGTTGGTCAGCTTCTCGGACAATTCGCTAAGTTGGCTGGCTGTTATGTTGTTGGATCTGCCGGATCTAAAGAAAAGGTTGATCTACTAAAGAACAAGTTGGGGTTTGATGAGGCTTTCAATTACAAGGAGGAGAACGATTTAGATGCAGCTTTGAAAAGGTACTTTCCTGAAGGAATTGACGTCTACTTTGAGCATGTGGGTGGGAAATTGTTTGACGCAGTGCTGCTCAACATGAAAGAACACGGTCGCATTGCTGTGTGTGGAATGATCTCACAATACAACCTTCCCGAGCCTGAGCCACTCAAAAACCTGTTCCAGATTGCATTGAAGCGGCTCAATATACATGGATTTACGCATCGCGATTACGATCACATAGTACCCGAGTACTATGAGTTTGTGCTGCCTTACATCCGGGAAGGTAAAATAGTGTATGTGGAAGACATAGTTGAAGGGATTGAGAATGGTCCAGCAGCACTGGTTGGACTCTTTACTGGTCGCAACTTTGGGAAGCAAGTAGTTGCAGTTGCACCACCTCGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

353

Amino Acids

39.27

Weight (kDa)

6.27

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 10 - 117 6.5e-18 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 173 - 301 6.7e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 206 - 346 1.8e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 248
AccI GTMKAC 1 cut(s) 702
AccII CGCG 1 cut(s) 879
AciI CCGC 1 cut(s) 850
AclWI GGATC 3 cut(s) 164, 580, 589
AcuI CTGAAG 2 cut(s) 131, 708
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 4 cut(s) 338, 680, 897, 905
AfiI CCNNNNNNNGG 2 cut(s) 248, 482
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 5 cut(s) 464, 637, 673, 847, 968
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 529, 668
AluI AGCT 2 cut(s) 529, 668
Alw26I GTCTC 4 cut(s) 119, 267, 480, 505
AlwI GGATC 3 cut(s) 164, 580, 589
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 3 cut(s) 277, 806, 899
ApeKI GCWGC 5 cut(s) 506, 665, 742, 919, 989
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AspS9I GGNCC 2 cut(s) 358, 983
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 3 cut(s) 20, 46, 314
AvaI CYCGRG 3 cut(s) 277, 806, 899
AvaII GGWCC 2 cut(s) 358, 983
BbsI GAAGAC 1 cut(s) 963
BbvI GCAGC 5 cut(s) 518, 677, 729, 906, 1001
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 932
BcoDI GTCTC 4 cut(s) 119, 267, 480, 505
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 6 cut(s) 507, 666, 743, 851, 920, 990
BlsI GCNGC 6 cut(s) 508, 667, 744, 852, 921, 991
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 2 cut(s) 234, 932
Bme18I GGWCC 2 cut(s) 358, 983
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 3 cut(s) 277, 806, 899
BmgT120I GGNCC 2 cut(s) 358, 983
BmiI GGNNCC 2 cut(s) 117, 360
BmrFI CCNGG 2 cut(s) 234, 932
BmsI GCATC 4 cut(s) 168, 518, 652, 883
BoxI GACNNNNGTC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 963
Bpu10I CCTNAGC 1 cut(s) 813
BpuEI CTTGAG 2 cut(s) 131, 249
BpuMI CCSGG 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 482
Bse1I ACTGG 3 cut(s) 421, 999, 1015
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 283, 927
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 2 cut(s) 248, 482
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 3 cut(s) 421, 999, 1015
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 5 cut(s) 518, 677, 729, 906, 1001
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 766
BsiHKCI CYCGRG 3 cut(s) 277, 806, 899
BsiSI CCGG 2 cut(s) 579, 931
BslFI GGGAC 3 cut(s) 59, 344, 383
BslI CCNNNNNNNGG 2 cut(s) 248, 482
BsmAI GTCTC 4 cut(s) 119, 267, 480, 505
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 3 cut(s) 59, 344, 383
Bso31I GGTCTC 1 cut(s) 505
BsoBI CYCGRG 3 cut(s) 277, 806, 899
Bsp143I GATC 6 cut(s) 169, 572, 581, 598, 786, 886
Bsp68I TCGCGA 1 cut(s) 879
BspACI CCGC 1 cut(s) 850
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 2 cut(s) 117, 360
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 3 cut(s) 164, 580, 589
BspTNI GGTCTC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 768
BsrI ACTGG 3 cut(s) 421, 999, 1015
BssMI GATC 6 cut(s) 169, 572, 581, 598, 786, 886
BssNI GRCGYC 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 103, 764
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 699
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 3 cut(s) 477, 546, 813
BstENI CCTNNNNNAGG 1 cut(s) 480
BstF5I GGATG 2 cut(s) 283, 927
BstFNI CGCG 1 cut(s) 879
BstKTI GATC 6 cut(s) 172, 575, 584, 601, 789, 889
BstMAI GTCTC 4 cut(s) 119, 267, 480, 505
BstMBI GATC 6 cut(s) 169, 572, 581, 598, 786, 886
BstMCI CGRYCG 1 cut(s) 766
BstMWI GCNNNNNNNGC 3 cut(s) 234, 515, 551
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 82, 716
BstPAI GACNNNNGTC 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 232, 930
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 5 cut(s) 518, 677, 729, 906, 1001
BstV2I GAAGAC 1 cut(s) 963
BstX2I RGATCY 2 cut(s) 572, 581
BstYI RGATCY 2 cut(s) 572, 581
BtgZI GCGATG 1 cut(s) 860
BtsCI GGATG 2 cut(s) 283, 927
BtsI GCAGTG 2 cut(s) 24, 744
BtsIMutI CAGTG 4 cut(s) 24, 390, 744, 992
BtuMI TCGCGA 1 cut(s) 879
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 556
CaiI CAGNNNCTG 1 cut(s) 512
Cfr13I GGNCC 2 cut(s) 358, 983
CseI GACGC 1 cut(s) 743
Csp6I GTAC 4 cut(s) 337, 679, 896, 904
CviAII CATG 7 cut(s) 79, 175, 327, 430, 713, 751, 863
CviQI GTAC 4 cut(s) 337, 679, 896, 904
DdeI CTNAG 3 cut(s) 477, 546, 813
DpnI GATC 6 cut(s) 171, 574, 583, 600, 788, 888
DpnII GATC 6 cut(s) 169, 572, 581, 598, 786, 886
DrdI GACNNNNNNGTC 1 cut(s) 83
DriI GACNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 358, 983
Eco57I CTGAAG 2 cut(s) 131, 708
Eco88I CYCGRG 3 cut(s) 277, 806, 899
EcoNI CCTNNNNNAGG 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 7 cut(s) 82, 178, 330, 433, 716, 754, 866
FaqI GGGAC 3 cut(s) 59, 344, 383
FatI CATG 7 cut(s) 78, 174, 326, 429, 712, 750, 862
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 6 cut(s) 507, 666, 743, 851, 920, 990
FokI GGATG 2 cut(s) 270, 914
Fsp4HI GCNGC 6 cut(s) 507, 666, 743, 851, 920, 990
GluI GCNGC 6 cut(s) 507, 666, 743, 851, 920, 990
HapII CCGG 2 cut(s) 579, 931
HgaI GACGC 1 cut(s) 743
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 7 cut(s) 82, 178, 330, 433, 716, 754, 866
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 5 cut(s) 71, 275, 280, 456, 1002
HpaI GTTAAC 1 cut(s) 321
HpaII CCGG 2 cut(s) 579, 931
HphI GGTGA 3 cut(s) 20, 46, 314
Hpy166II GTNNAC 3 cut(s) 274, 321, 703
Hpy188I TCNGA 3 cut(s) 76, 111, 536
Hpy188III TCNNGA 6 cut(s) 148, 287, 686, 806, 835, 878
Hpy8I GTNNAC 3 cut(s) 274, 321, 703
HpyAV CCTTC 5 cut(s) 106, 683, 812, 929, 962
HpyCH4III ACNGT 2 cut(s) 103, 764
HpyCH4IV ACGT 2 cut(s) 219, 699
HpyCH4V TGCA 8 cut(s) 181, 228, 506, 518, 665, 842, 1040, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 515, 551
HpyF3I CTNAG 3 cut(s) 477, 546, 813
HpySE526I ACGT 2 cut(s) 219, 699
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 7 cut(s) 82, 178, 330, 433, 716, 754, 866
KspAI GTTAAC 1 cut(s) 321
Kzo9I GATC 6 cut(s) 169, 572, 581, 598, 786, 886
Lsp1109I GCAGC 5 cut(s) 518, 677, 729, 906, 1001
LweI GCATC 4 cut(s) 168, 518, 652, 883
MaeII ACGT 2 cut(s) 219, 699
MaeIII GTNAC 1 cut(s) 85
MalI GATC 6 cut(s) 171, 574, 583, 600, 788, 888
MboI GATC 6 cut(s) 169, 572, 581, 598, 786, 886
MboII GAAGA 2 cut(s) 344, 968
MflI RGATCY 2 cut(s) 572, 581
MluCI AATT 6 cut(s) 182, 243, 539, 637, 693, 725
MlyI GAGTC 4 cut(s) 80, 269, 289, 996
MmeI TCCRAC 2 cut(s) 550, 979
MseI TTAA 3 cut(s) 320, 378, 1060
MslI CAYNNNNRTG 4 cut(s) 353, 393, 717, 773
MspI CCGG 2 cut(s) 579, 931
MspR9I CCNGG 2 cut(s) 234, 932
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 3 cut(s) 234, 515, 551
NciI CCSGG 1 cut(s) 932
NdeII GATC 6 cut(s) 169, 572, 581, 598, 786, 886
NlaIII CATG 7 cut(s) 82, 178, 330, 433, 716, 754, 866
NlaIV GGNNCC 2 cut(s) 117, 360
NmuCI GTSAC 1 cut(s) 85
NruI TCGCGA 1 cut(s) 879
NspI RCATGY 2 cut(s) 82, 716
PaeR7I CTCGAG 1 cut(s) 277
PaqCI CACCTGC 1 cut(s) 22
PciI ACATGT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 930
PkrI GCNGC 6 cut(s) 508, 667, 744, 852, 921, 991
PleI GAGTC 4 cut(s) 79, 269, 288, 996
PpsI GAGTC 4 cut(s) 79, 269, 288, 996
PscI ACATGT 1 cut(s) 78
PshAI GACNNNNGTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 117, 360
PspPI GGNCC 2 cut(s) 358, 983
PspXI VCTCGAGB 1 cut(s) 277
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 2 cut(s) 572, 581
RruI TCGCGA 1 cut(s) 879
RsaI GTAC 4 cut(s) 338, 680, 897, 905
RsaNI GTAC 4 cut(s) 337, 679, 896, 904
RseI CAYNNNNRTG 4 cut(s) 353, 393, 717, 773
SaqAI TTAA 3 cut(s) 320, 378, 1060
SatI GCNGC 6 cut(s) 507, 666, 743, 851, 920, 990
Sau3AI GATC 6 cut(s) 169, 572, 581, 598, 786, 886
Sau96I GGNCC 2 cut(s) 358, 983
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 4 cut(s) 80, 269, 289, 996
ScrFI CCNGG 2 cut(s) 234, 932
SfaNI GCATC 4 cut(s) 168, 518, 652, 883
SfcI CTRYAG 1 cut(s) 504
Sfr274I CTCGAG 1 cut(s) 277
SinI GGWCC 2 cut(s) 358, 983
SlaI CTCGAG 1 cut(s) 277
SmiMI CAYNNNNRTG 4 cut(s) 353, 393, 717, 773
SmlI CTYRAG 3 cut(s) 146, 264, 277
SmoI CTYRAG 3 cut(s) 146, 264, 277
Sse9I AATT 6 cut(s) 182, 243, 539, 637, 693, 725
SsiI CCGC 1 cut(s) 850
StyD4I CCNGG 2 cut(s) 232, 930
TaaI ACNGT 2 cut(s) 103, 764
TaiI ACGT 2 cut(s) 222, 702
TaqI TCGA 2 cut(s) 278, 1054
TasI AATT 6 cut(s) 182, 243, 539, 637, 693, 725
TatI WGTACW 2 cut(s) 336, 903
TauI GCSGC 1 cut(s) 853
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 3 cut(s) 320, 378, 1060
Tru9I TTAA 3 cut(s) 320, 378, 1060
TscAI CASTG 4 cut(s) 24, 397, 744, 999
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 5 cut(s) 506, 665, 742, 919, 989
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 767
TspRI CASTG 4 cut(s) 24, 397, 744, 999
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 358, 983
XagI CCTNNNNNAGG 1 cut(s) 480
XceI RCATGY 2 cut(s) 82, 716
XhoI CTCGAG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 702
ZraI GACGTC 1 cut(s) 700
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.