pycom12561g00320

2-alkenal reductase (NADP( )-dependent)-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012561
Physical Location & Seq
Forward (+)
498651 .. 500944
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12561g00320.1

Sequence Viewer

Length: 720 bp
ATGGCAGAAGTGAGTAACAAGCAGGTGATACTGAGGGATTATGTAGTCAAGGCCTTTCCCAAAGAGTCAGACTTGTGTGTGATCAACACCGCTACTATCAAGTTGAAGCTTCCCGCAGAGACTGATCAGCCAGCTGATGCGGTTACTTCCTCAAAGGAACAACTAGTCCTACTTAAGAACCTCTACTTGTCTTGCGATCCCTACCAACGACTCTTTATGGAAAGCGTCCAAGGGCACAGCGTCCCATCAATGTCCTCCTATACACCTGGCTCTACGATACACGGATATGGAGTGGCTCAAGTTTTGGACTCTAGGCACCCAGATTTTAAGGCAGGAGACTTAGTTTGGGGGACGACCAATTGGGAAGAGTACAGTCTAATCACTACACCCCAAGACCTCTTCAAAATCCACCACACCGATATACCCCTATCCTATTATACTGGAATTTTAGGTATACCTGGTATGACCGCTTATGTTGGTTTCTACGAAATATGTTCTCCTAAGAAAGGAGAATACGTCTTCATTTCAGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGACAACTTGCAAAATTGATGGGTTGTTATGTTGTTGGAAGTGCTGGTAGTAACGAAAAGGTCGATCTTTTGAAGAATAAGTTTGGATTTGACGAGGCTTTTAACTACAAAGAAGAAAATGACTTGAATGTGGCTTTGAAAAGATTTCCGGGAAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

26.36

Weight (kDa)

5.87

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 48 - 135 2.2e-18 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 181 - 234 1.9e-10 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 454
AciI CCGC 4 cut(s) 90, 114, 140, 468
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 444
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 506
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 5 cut(s) 106, 403, 631, 685, 697
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 2 cut(s) 265, 457
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 4 cut(s) 109, 134, 536, 553
AluI AGCT 4 cut(s) 109, 134, 536, 553
Alw26I GTCTC 2 cut(s) 113, 330
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 2 cut(s) 122, 536
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 530, 533
ApoI RAATTY 1 cut(s) 444
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 511
BbvI GCAGC 2 cut(s) 542, 545
BccI CCATC 2 cut(s) 253, 571
BciT130I CCWGG 2 cut(s) 267, 459
BclI TGATCA 2 cut(s) 81, 124
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 2 cut(s) 113, 330
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 2 cut(s) 164, 312
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 2 cut(s) 531, 534
BlsI GCNGC 2 cut(s) 532, 535
Bme1390I CCNGG 3 cut(s) 267, 459, 708
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 3 cut(s) 267, 459, 708
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 4 cut(s) 327, 357, 501, 531
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 445
BseBI CCWGG 2 cut(s) 267, 459
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 542, 545
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 707
BslFI GGGAC 2 cut(s) 227, 364
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 113, 330
BsmFI GGGAC 2 cut(s) 227, 364
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 4 cut(s) 81, 124, 196, 622
BspACI CCGC 4 cut(s) 90, 114, 140, 468
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 317
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 173
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 4 cut(s) 81, 124, 196, 622
BssNAI GTATAC 1 cut(s) 455
BssT1I CCWWGG 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 267, 459
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 360, 404
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 32, 340, 501
BstENI CCTNNNNNAGG 1 cut(s) 504
BstKTI GATC 4 cut(s) 84, 127, 199, 625
BstMAI GTCTC 2 cut(s) 113, 330
BstMBI GATC 4 cut(s) 81, 124, 196, 622
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 2 cut(s) 267, 459
BstSCI CCNGG 3 cut(s) 265, 457, 706
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 542, 545
BstV2I GAAGAC 1 cut(s) 511
BstZ17I GTATAC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 53
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 2 cut(s) 122, 536
CseI GACGC 2 cut(s) 214, 229
CsiI ACCWGGT 1 cut(s) 457
Csp6I GTAC 1 cut(s) 370
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 3 cut(s) 32, 340, 501
DpnI GATC 4 cut(s) 83, 126, 198, 624
DpnII GATC 4 cut(s) 81, 124, 196, 622
Eam1104I CTCTTC 2 cut(s) 360, 404
EarI CTCTTC 2 cut(s) 360, 404
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 265, 457
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaqI GGGAC 2 cut(s) 227, 364
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 2 cut(s) 81, 124
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 531, 534
Fsp4HI GCNGC 2 cut(s) 531, 534
FspBI CTAG 2 cut(s) 164, 312
GluI GCNGC 2 cut(s) 531, 534
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 707
HgaI GACGC 2 cut(s) 214, 229
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 65, 210, 308
HpaII CCGG 1 cut(s) 707
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 705
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 1 cut(s) 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 3 cut(s) 32, 340, 501
HpySE526I ACGT 1 cut(s) 516
Ksp22I TGATCA 2 cut(s) 81, 124
Kzo9I GATC 4 cut(s) 81, 124, 196, 622
Lsp1109I GCAGC 2 cut(s) 542, 545
LweI GCATC 1 cut(s) 127
MabI ACCWGGT 1 cut(s) 457
MaeI CTAG 2 cut(s) 164, 312
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 3 cut(s) 14, 142, 608
MalI GATC 4 cut(s) 83, 126, 198, 624
MboI GATC 4 cut(s) 81, 124, 196, 622
MboII GAAGA 5 cut(s) 377, 391, 511, 643, 683
MfeI CAATTG 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 3 cut(s) 358, 444, 572
MlyI GAGTC 3 cut(s) 74, 204, 302
MmeI TCCRAC 2 cut(s) 538, 574
MnlI CCTC 6 cut(s) 27, 160, 191, 265, 407, 646
MseI TTAA 3 cut(s) 174, 327, 660
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 2 cut(s) 134, 536
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 1 cut(s) 707
MspR9I CCNGG 3 cut(s) 267, 459, 708
MunI CAATTG 1 cut(s) 358
MvaI CCWGG 2 cut(s) 267, 459
MwoI GCNNNNNNNGC 1 cut(s) 539
NciI CCSGG 1 cut(s) 708
NdeII GATC 4 cut(s) 81, 124, 196, 622
NlaIV GGNNCC 1 cut(s) 317
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 2 cut(s) 532, 535
PleI GAGTC 3 cut(s) 73, 204, 302
PpsI GAGTC 3 cut(s) 73, 204, 302
Psp6I CCWGG 2 cut(s) 265, 457
PspGI CCWGG 2 cut(s) 265, 457
PspN4I GGNNCC 1 cut(s) 317
PstNI CAGNNNCTG 2 cut(s) 122, 536
PvuII CAGCTG 2 cut(s) 134, 536
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 3 cut(s) 174, 327, 660
SatI GCNGC 2 cut(s) 531, 534
Sau3AI GATC 4 cut(s) 81, 124, 196, 622
SchI GAGTC 3 cut(s) 74, 204, 302
ScrFI CCNGG 3 cut(s) 267, 459, 708
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 457
SfaNI GCATC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 173, 297
SmoI CTYRAG 2 cut(s) 173, 297
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 3 cut(s) 358, 444, 572
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 4 cut(s) 90, 114, 140, 468
SspMI CTAG 2 cut(s) 164, 312
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 3 cut(s) 265, 457, 706
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 519
TaqI TCGA 1 cut(s) 621
TasI AATT 3 cut(s) 358, 444, 572
TatI WGTACW 1 cut(s) 369
Tru1I TTAA 3 cut(s) 174, 327, 660
Tru9I TTAA 3 cut(s) 174, 327, 660
TseI GCWGC 2 cut(s) 530, 533
TspDTI ATGAA 1 cut(s) 511
TspGWI ACGGA 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 1 cut(s) 444
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 2 cut(s) 164, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.