RchiOBHm_Chr2g0084641

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000431
Physical Location & Seq
Forward (+)
351970 .. 354921
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46023

Sequence Viewer

Length: 1050 bp
ATGGCGGAGTTTGAAGTGAAGAACAAACAAGTGTTGTTCAAAAACTATGTCGAAGGCTTTCCCAAAGAGTCGGACATGGTCGTTACAGATGCTTCCACCATCAGACTCAAAGTTCCGGCAGATGCTCCCAATTCCGTTTTGCTCAAGAACCTCTACTTGTCCTGCGATCCAGTCATGCGCATCCGCATGAGGAAACCTGGAGACGAAACTTCATCTTATTTTACGCCCTATGCCCCTGGCTCCCCTTTGAGTGGGCATGGAGTGGGTGAAGTTGTAGATTCTGGGCACCCAGACTTTAAGGAAGGTGAACTTGTCTGGGGAATAACCAAATGGGAACACTACACCTTAATCACGCAACCAGAAAGCCTCCATAAGATCCAACACGCTGACGTTCCTCTTTCCTACTATACCGGTATACTTGGTATGCCTGGGATGACCGCCTATGCAGGCTTCAATGAAGTTTGTTCTCCTAAGAAGGGAGAATATGTCTTCATTTCAGCGGCATCAGGTGCCGTTGGTCAGCTGGTTGGACAATTAGCAAAATTGTTGGGTTGTTATGTCGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGACCTTTTGAAGAATAAGTTAAATTTTGATGAAGCTTTCAACTATAAGGAAGAGCATGACTTAACCGCAGCTCTGAAAAGGTATTTTCCAGAAGGCATTGACATATACTTTGAGAATGTTGGTGGAAAATTTCTGGATGCAGTCCTGCTCAACATGAGAGTTCACGGCCGGATTGCAGTGTGTGGAATGATTTCACAGTACAATCTTGAAAAGCCTGAAGGTGTGACAAATTTGATGTGCCTTGTATACAAGCGGATTCATTTGCAAGGATTTACAGTCCGCGATTACTATCACCTCTATCCCAAGTACCTGGACTATATTCTGCCTTGCATAAGAGAGGGAAAGGTGATATACTTGGAAGACATTGCTGAAGGCCTTGAGAACGGACCATCAGCGTTGGTAGGACTCTTTAGTGGTCGCAATGTTGGCAAACAACTAGTTTCAATTTCCCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

349

Amino Acids

38.83

Weight (kDa)

6.22

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 9 - 125 4.1e-23 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 171 - 302 4.3e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 285, 509
AccI GTMKAC 2 cut(s) 415, 837
AccII CGCG 1 cut(s) 873
AciI CCGC 7 cut(s) 5, 184, 438, 500, 657, 844, 871
AclWI GGATC 2 cut(s) 161, 370
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 3 cut(s) 613, 719, 820
AcuI CTGAAG 2 cut(s) 828, 981
AfaI GTAC 2 cut(s) 791, 899
AfiI CCNNNNNNNGG 2 cut(s) 251, 476
AgeI ACCGGT 1 cut(s) 410
AgsI TTSAA 7 cut(s) 14, 40, 454, 601, 631, 800, 1035
AhlI ACTAGT 1 cut(s) 1027
AjnI CCWGG 4 cut(s) 196, 235, 427, 900
AluBI AGCT 3 cut(s) 523, 626, 662
AluI AGCT 3 cut(s) 523, 626, 662
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 2 cut(s) 161, 370
AoxI GGCC 2 cut(s) 757, 964
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 3 cut(s) 613, 719, 820
ArsI GACNNNNNNTTYG 4 cut(s) 33, 65, 683, 715
AsiGI ACCGGT 1 cut(s) 410
Asp700I GAANNNNTTC 2 cut(s) 57, 781
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 977
AsuHPI GGTGA 4 cut(s) 278, 317, 875, 949
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 2 cut(s) 285, 509
BbsI GAAGAC 2 cut(s) 481, 957
BbvI GCAGC 1 cut(s) 671
BccI CCATC 2 cut(s) 107, 988
BceAI ACGGC 2 cut(s) 497, 772
BciT130I CCWGG 4 cut(s) 198, 237, 429, 902
BcoDI GTCTC 1 cut(s) 195
BcuI ACTAGT 1 cut(s) 1027
BfaI CTAG 1 cut(s) 1028
BisI GCNGC 2 cut(s) 501, 660
BlsI GCNGC 2 cut(s) 502, 661
Bme1390I CCNGG 4 cut(s) 198, 237, 429, 902
Bme18I GGWCC 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 3 cut(s) 241, 287, 511
BmrFI CCNGG 4 cut(s) 198, 237, 429, 902
BmsI GCATC 5 cut(s) 79, 112, 189, 512, 718
BpiI GAAGAC 2 cut(s) 481, 957
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 128, 989
BsaBI GATNNNNATC 1 cut(s) 879
BsaJI CCNNGG 2 cut(s) 235, 428
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 476
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 170, 1045
Bse3DI GCAATG 2 cut(s) 954, 1018
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 4 cut(s) 198, 237, 429, 902
BseDI CCNNGG 2 cut(s) 235, 428
BseGI GGATG 3 cut(s) 180, 438, 733
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 2 cut(s) 251, 476
BseMI GCAATG 2 cut(s) 954, 1018
BseNI ACTGG 2 cut(s) 170, 1045
BseSI GKGCMC 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 757
BseXI GCAGC 1 cut(s) 671
Bsh1236I CGCG 1 cut(s) 873
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 2 cut(s) 759, 966
BshNI GGYRCC 2 cut(s) 285, 509
BshTI ACCGGT 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 760
BsiSI CCGG 3 cut(s) 116, 411, 760
BslI CCNNNNNNNGG 2 cut(s) 251, 476
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
BsnI GGCC 2 cut(s) 759, 966
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 166, 375
BspACI CCGC 7 cut(s) 5, 184, 438, 500, 657, 844, 871
BspANI GGCC 2 cut(s) 759, 966
BspFNI CGCG 1 cut(s) 873
BspLI GGNNCC 3 cut(s) 241, 287, 511
BspPI GGATC 2 cut(s) 161, 370
BspQI GCTCTTC 1 cut(s) 636
BspT107I GGYRCC 2 cut(s) 285, 509
BsrDI GCAATG 2 cut(s) 954, 1018
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 2 cut(s) 170, 1045
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 235, 428
BssMI GATC 2 cut(s) 166, 375
BssNAI GTATAC 2 cut(s) 416, 838
Bst1107I GTATAC 2 cut(s) 416, 838
Bst2UI CCWGG 4 cut(s) 198, 237, 429, 902
Bst4CI ACNGT 2 cut(s) 789, 868
Bst6I CTCTTC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 180, 438, 733
BstFNI CGCG 1 cut(s) 873
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 169, 378
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 166, 375
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 2 cut(s) 509, 1017
BstNI CCWGG 4 cut(s) 198, 237, 429, 902
BstSCI CCNGG 4 cut(s) 196, 235, 427, 900
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 1 cut(s) 873
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 2 cut(s) 481, 957
BstX2I RGATCY 1 cut(s) 375
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 375
BstZ17I GTATAC 2 cut(s) 416, 838
BstZI CGGCCG 1 cut(s) 757
BsuRI GGCC 2 cut(s) 759, 966
BtsCI GGATG 3 cut(s) 180, 438, 733
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 1 cut(s) 774
Cac8I GCNNGC 1 cut(s) 448
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 977
Csp6I GTAC 2 cut(s) 790, 898
CspAI ACCGGT 1 cut(s) 410
CviAII CATG 6 cut(s) 76, 175, 187, 257, 647, 745
CviQI GTAC 2 cut(s) 790, 898
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 168, 377
DpnII GATC 2 cut(s) 166, 375
EaeI YGGCCR 1 cut(s) 757
EagI CGGCCG 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 757
Eco147I AGGCCT 1 cut(s) 966
Eco47I GGWCC 1 cut(s) 977
Eco52I CGGCCG 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 828, 981
EcoRII CCWGG 4 cut(s) 196, 235, 427, 900
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 6 cut(s) 79, 178, 190, 260, 650, 748
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 6 cut(s) 75, 174, 186, 256, 646, 744
FblI GTMKAC 2 cut(s) 415, 837
Fnu4HI GCNGC 2 cut(s) 501, 660
FokI GGATG 3 cut(s) 167, 445, 740
Fsp4HI GCNGC 2 cut(s) 501, 660
FspAI RTGCGCAY 1 cut(s) 179
FspBI CTAG 1 cut(s) 1028
FspI TGCGCA 1 cut(s) 179
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 501, 660
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 759, 966
HapII CCGG 3 cut(s) 116, 411, 760
HhaI GCGC 1 cut(s) 180
Hin1II CATG 6 cut(s) 79, 178, 190, 260, 650, 748
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 5 cut(s) 68, 105, 278, 847, 996
HpaII CCGG 3 cut(s) 116, 411, 760
HphI GGTGA 4 cut(s) 278, 317, 875, 949
Hpy166II GTNNAC 5 cut(s) 308, 416, 592, 754, 838
Hpy188I TCNGA 3 cut(s) 73, 104, 666
Hpy188III TCNNGA 4 cut(s) 145, 680, 725, 797
Hpy8I GTNNAC 5 cut(s) 308, 416, 592, 754, 838
HpyAV CCTTC 6 cut(s) 47, 296, 469, 677, 803, 956
HpyCH4III ACNGT 2 cut(s) 789, 868
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 446, 731, 767, 856, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 1017
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 6 cut(s) 79, 178, 190, 260, 650, 748
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 166, 375
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 2 cut(s) 130, 245
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 5 cut(s) 79, 112, 189, 512, 718
MaeI CTAG 1 cut(s) 1028
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 82, 814
MalI GATC 2 cut(s) 168, 377
MboI GATC 2 cut(s) 166, 375
MboII GAAGA 5 cut(s) 31, 481, 613, 653, 962
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 7 cut(s) 130, 533, 542, 613, 719, 820, 1035
MlyI GAGTC 3 cut(s) 77, 99, 990
MmeI TCCRAC 4 cut(s) 51, 403, 508, 544
MnlI CCTC 6 cut(s) 161, 183, 377, 405, 896, 922
MroXI GAANNNNTTC 2 cut(s) 57, 781
MseI TTAA 4 cut(s) 297, 347, 611, 653
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 2 cut(s) 500, 523
MspI CCGG 3 cut(s) 116, 411, 760
MspR9I CCNGG 4 cut(s) 198, 237, 429, 902
MvaI CCWGG 4 cut(s) 198, 237, 429, 902
MvnI CGCG 1 cut(s) 873
MwoI GCNNNNNNNGC 2 cut(s) 509, 1017
NdeII GATC 2 cut(s) 166, 375
NlaIII CATG 6 cut(s) 79, 178, 190, 260, 650, 748
NlaIV GGNNCC 3 cut(s) 241, 287, 511
NmuCI GTSAC 1 cut(s) 814
NsbI TGCGCA 1 cut(s) 179
PceI AGGCCT 1 cut(s) 966
PciSI GCTCTTC 1 cut(s) 636
PdmI GAANNNNTTC 2 cut(s) 57, 781
PfeI GAWTC 2 cut(s) 278, 847
PflFI GACNNNGTC 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 410
PkrI GCNGC 2 cut(s) 502, 661
PleI GAGTC 3 cut(s) 76, 99, 990
PpsI GAGTC 3 cut(s) 76, 99, 990
Psp6I CCWGG 4 cut(s) 196, 235, 427, 900
PspGI CCWGG 4 cut(s) 196, 235, 427, 900
PspN4I GGNNCC 3 cut(s) 241, 287, 511
PspPI GGNCC 1 cut(s) 977
PsuI RGATCY 1 cut(s) 375
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 791, 899
RsaNI GTAC 2 cut(s) 790, 898
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 4 cut(s) 297, 347, 611, 653
SatI GCNGC 2 cut(s) 501, 660
Sau3AI GATC 2 cut(s) 166, 375
Sau96I GGNCC 1 cut(s) 977
SchI GAGTC 3 cut(s) 77, 99, 990
ScrFI CCNGG 4 cut(s) 198, 237, 429, 902
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 5 cut(s) 79, 112, 189, 512, 718
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 143, 968
SmoI CTYRAG 2 cut(s) 143, 968
SpeI ACTAGT 1 cut(s) 1027
Sse9I AATT 7 cut(s) 130, 533, 542, 613, 719, 820, 1035
SseBI AGGCCT 1 cut(s) 966
SsiI CCGC 7 cut(s) 5, 184, 438, 500, 657, 844, 871
SspMI CTAG 1 cut(s) 1028
StuI AGGCCT 1 cut(s) 966
StyD4I CCNGG 4 cut(s) 196, 235, 427, 900
TaaI ACNGT 2 cut(s) 789, 868
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 51
TasI AATT 7 cut(s) 130, 533, 542, 613, 719, 820, 1035
TatI WGTACW 1 cut(s) 789
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 2 cut(s) 278, 847
Tru1I TTAA 4 cut(s) 297, 347, 611, 653
Tru9I TTAA 4 cut(s) 297, 347, 611, 653
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 5 cut(s) 201, 471, 481, 636, 839
TspGWI ACGGA 2 cut(s) 124, 990
TspRI CASTG 1 cut(s) 774
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 977
XapI RAATTY 3 cut(s) 613, 719, 820
XmiI GTMKAC 2 cut(s) 415, 837
XmnI GAANNNNTTC 2 cut(s) 57, 781
XspI CTAG 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.