AT5G38000

NADP-dependent alkenal double bond reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000431
Physical Location & Seq
Forward (+)
15141650 .. 15143542
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38000.2

Sequence Viewer

Length: 1062 bp
ATGGCAAACATCGGCGTAGTGACGACAGCGACTAACAACCAGGTGATCTTCCGTAACTACGTGAATGGATTCCCTAAAGAATCCGACCTCTACATTGCAGCAAGCACCGTTGACTTACGTGTACCTCCCGGATCCATGGCGGTTCTAGTGAAGAATCTCTACTTATCTTGCGATCCTCATAGCCGCACTCGCATGGGGAAGCCTGATCCCTCGTCTCCTGCTTCCATGGCTCATGCTTTCACTATCGGCAAGCCAATCTCTGGGTTTGGAGTGGCTAAAGCAATAGATTCAGGGCACCCAAATTACAAAACAGGAGATTTACTTTGGGGAAGAGTTGGTTGGGAAGAGTATAGTGTTATTACTCCAACTCCTTCTTCACATTTCAAGATTCATCACACCGATGTTCCATTATCTTTCTACACTGGACTTCTTGGTATTCCGGGTCTCACTGCGTATATTGGGTTTTACGAGATATGTTCTCCGAAAAAAGGAGAGACTGTTTTTGTATCAGCTGCATCTGGCGCAGTAGGTCAACTCGTGGGACAGTTTGCGAAGATGGCGGGATGCTATGTCGTTGGAAGCGCTAGCAGTGAAGAGAAGGTTGATCTTCTCAAGACTAAGTTTGGGTATGATGACGCTTTCAATTATAAGGAAGAAAAGGATCTTAGTGCTGCCCTAAAGAGGTGTTTCCCAGAAGGAATAGACATATACTTTGAGAACGTGGGAGGTAAAATGTTAGAGGCAGTGCTCGAAAACATGAGGACACATGGCCGAATCGCAGCGTGTGGAATGATATCACAATACAATCTAAAGAAACCAGAAGTTTTACATAACACAGCCACCATTGTTCACAAACGCATCCGTGTTCAAGGTTTTGCTGCTGTCGAATTCTTTGATAGGTACTCCAAGTTTTTGGACTTCATACTTCCACATGTAAGAGAAGGGAAGTTAACATATGTTGAGGATATATCCCAAGGACTTGAGAATGGACCTTCTGCTTTGATTGGACTCTTCCACGGTAAGAACGTCGGGAAACAACTTGTCGAAGTTGCTCGCGTGTGA

Protein Analysis

353

Amino Acids

38.55

Weight (kDa)

8.43

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 14 - 122 3.9e-18 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 156 - 289 2.4e-25 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 1 cut(s) 1056
AciI CCGC 3 cut(s) 140, 184, 560
AclWI GGATC 5 cut(s) 126, 139, 167, 200, 669
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 1 cut(s) 887
AfaI GTAC 2 cut(s) 123, 902
AfeI AGCGCT 1 cut(s) 583
AfiI CCNNNNNNNGG 3 cut(s) 260, 488, 681
AflIII ACRYGT 2 cut(s) 118, 931
AgsI TTSAA 3 cut(s) 385, 643, 869
AjnI CCWGG 1 cut(s) 39
AjuI GAANNNNNNNTTGG 4 cut(s) 322, 354, 358, 390
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 3 cut(s) 219, 449, 488
AlwI GGATC 5 cut(s) 126, 139, 167, 200, 669
Aor51HI AGCGCT 1 cut(s) 583
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 5 cut(s) 98, 512, 671, 779, 878
ApoI RAATTY 1 cut(s) 887
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 2 cut(s) 524, 584
AspS9I GGNCC 1 cut(s) 989
AsuC2I CCSGG 2 cut(s) 129, 441
AsuHPI GGTGA 1 cut(s) 55
AsuNHI GCTAGC 1 cut(s) 584
AvaII GGWCC 1 cut(s) 989
BaeGI GKGCMC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BauI CACGAG 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 5 cut(s) 110, 499, 658, 791, 865
BccI CCATC 1 cut(s) 550
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 2 cut(s) 129, 441
BcoDI GTCTC 3 cut(s) 219, 449, 488
BfaI CTAG 2 cut(s) 146, 585
BfoI RGCGCY 1 cut(s) 585
BisI GCNGC 6 cut(s) 99, 184, 513, 672, 780, 879
BlsI GCNGC 6 cut(s) 100, 185, 514, 673, 781, 880
Bme1390I CCNGG 3 cut(s) 41, 129, 441
Bme18I GGWCC 1 cut(s) 989
BmgT120I GGNCC 1 cut(s) 989
BmiI GGNNCC 2 cut(s) 133, 296
BmrFI CCNGG 3 cut(s) 41, 129, 441
BmsI GCATC 3 cut(s) 524, 554, 867
BmtI GCTAGC 1 cut(s) 588
BpuEI CTTGAG 2 cut(s) 596, 1001
BpuMI CCSGG 2 cut(s) 129, 441
BsaAI YACGTR 2 cut(s) 61, 119
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 135, 225, 973, 1015
BsaXI ACNNNNNCTCC 4 cut(s) 352, 382, 483, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 488, 681
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 4 cut(s) 135, 225, 973, 1015
BseGI GGATG 2 cut(s) 569, 858
BseLI CCNNNNNNNGG 3 cut(s) 260, 488, 681
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 5 cut(s) 110, 499, 658, 791, 865
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 750
BsiSI CCGG 2 cut(s) 129, 440
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 3 cut(s) 260, 488, 681
BsmAI GTCTC 3 cut(s) 219, 449, 488
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 1 cut(s) 771
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 297, 750
Bsp143I GATC 6 cut(s) 45, 131, 172, 205, 604, 661
Bsp19I CCATGG 2 cut(s) 135, 225
BspACI CCGC 3 cut(s) 140, 184, 560
BspANI GGCC 1 cut(s) 771
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 2 cut(s) 133, 296
BspOI GCTAGC 1 cut(s) 588
BspPI GGATC 5 cut(s) 126, 139, 167, 200, 669
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 4 cut(s) 135, 225, 973, 1015
BssMI GATC 6 cut(s) 45, 131, 172, 205, 604, 661
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 3 cut(s) 135, 225, 973
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 4 cut(s) 109, 499, 546, 1019
Bst6I CTCTTC 4 cut(s) 325, 339, 588, 1016
BstBAI YACGTR 2 cut(s) 61, 119
BstC8I GCNNGC 4 cut(s) 103, 251, 586, 1054
BstDEI CTNAG 2 cut(s) 618, 665
BstDSI CCRYGG 3 cut(s) 135, 225, 1015
BstF5I GGATG 2 cut(s) 569, 858
BstFNI CGCG 1 cut(s) 1056
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 2 cut(s) 524, 584
BstKTI GATC 6 cut(s) 48, 134, 175, 208, 607, 664
BstMAI GTCTC 3 cut(s) 219, 449, 488
BstMBI GATC 6 cut(s) 45, 131, 172, 205, 604, 661
BstMWI GCNNNNNNNGC 4 cut(s) 189, 227, 521, 557
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 3 cut(s) 39, 127, 439
BstSLI GKGCMC 1 cut(s) 297
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 5 cut(s) 110, 499, 658, 791, 865
BstX2I RGATCY 2 cut(s) 131, 661
BstXI CCANNNNNNTGG 1 cut(s) 913
BstYI RGATCY 2 cut(s) 131, 661
BsuRI GGCC 1 cut(s) 771
BtgI CCRYGG 3 cut(s) 135, 225, 1015
BtsCI GGATG 2 cut(s) 569, 858
BtsI GCAGTG 3 cut(s) 447, 595, 750
BtsIMutI CAGTG 4 cut(s) 420, 447, 595, 750
Cac8I GCNNGC 4 cut(s) 103, 251, 586, 1054
CfoI GCGC 2 cut(s) 524, 584
Cfr13I GGNCC 1 cut(s) 989
CseI GACGC 1 cut(s) 644
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 122, 901
CviAII CATG 7 cut(s) 136, 193, 226, 233, 757, 767, 932
CviJI RGCY 8 cut(s) 183, 202, 230, 253, 275, 512, 771, 839
CviKI_1 RGCY 8 cut(s) 183, 202, 230, 253, 275, 512, 771, 839
CviQI GTAC 2 cut(s) 122, 901
DdeI CTNAG 2 cut(s) 618, 665
DpnI GATC 6 cut(s) 47, 133, 174, 207, 606, 663
DpnII GATC 6 cut(s) 45, 131, 172, 205, 604, 661
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 4 cut(s) 325, 339, 588, 1016
EarI CTCTTC 4 cut(s) 325, 339, 588, 1016
Eco130I CCWWGG 3 cut(s) 135, 225, 973
Eco31I GGTCTC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 989
Eco47III AGCGCT 1 cut(s) 583
EcoRI GAATTC 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 795
EcoT14I CCWWGG 3 cut(s) 135, 225, 973
ErhI CCWWGG 3 cut(s) 135, 225, 973
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 7 cut(s) 139, 196, 229, 236, 760, 770, 935
FaqI GGGAC 1 cut(s) 555
FatI CATG 7 cut(s) 135, 192, 225, 232, 756, 766, 931
FauI CCCGC 1 cut(s) 553
FauNDI CATATG 1 cut(s) 955
Fnu4HI GCNGC 6 cut(s) 99, 184, 513, 672, 780, 879
FokI GGATG 2 cut(s) 576, 845
Fsp4HI GCNGC 6 cut(s) 99, 184, 513, 672, 780, 879
FspBI CTAG 2 cut(s) 146, 585
GlaI GCGC 2 cut(s) 523, 583
GluI GCNGC 6 cut(s) 99, 184, 513, 672, 780, 879
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 1 cut(s) 771
HapII CCGG 2 cut(s) 129, 440
HgaI GACGC 1 cut(s) 644
HhaI GCGC 2 cut(s) 524, 584
Hin1II CATG 7 cut(s) 139, 196, 229, 236, 760, 770, 935
Hin6I GCGC 2 cut(s) 522, 582
HinP1I GCGC 2 cut(s) 522, 582
HincII GTYRAC 3 cut(s) 112, 533, 951
HindII GTYRAC 3 cut(s) 112, 533, 951
HinfI GANTC 7 cut(s) 69, 80, 154, 287, 388, 774, 1008
HpaI GTTAAC 1 cut(s) 951
HpaII CCGG 2 cut(s) 129, 440
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 5 cut(s) 112, 122, 533, 850, 951
Hpy188I TCNGA 2 cut(s) 85, 483
Hpy188III TCNNGA 3 cut(s) 385, 613, 1030
Hpy8I GTNNAC 5 cut(s) 112, 122, 533, 850, 951
Hpy99I CGWCG 1 cut(s) 1031
HpyAV CCTTC 5 cut(s) 381, 592, 689, 935, 1002
HpyCH4III ACNGT 4 cut(s) 109, 499, 546, 1019
HpyCH4IV ACGT 4 cut(s) 60, 118, 720, 1026
HpyCH4V TGCA 2 cut(s) 98, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 227, 521, 557
HpyF3I CTNAG 2 cut(s) 618, 665
HpySE526I ACGT 4 cut(s) 60, 118, 720, 1026
Hsp92II CATG 7 cut(s) 139, 196, 229, 236, 760, 770, 935
HspAI GCGC 2 cut(s) 522, 582
KspAI GTTAAC 1 cut(s) 951
Kzo9I GATC 6 cut(s) 45, 131, 172, 205, 604, 661
Lsp1109I GCAGC 5 cut(s) 110, 499, 658, 791, 865
LweI GCATC 3 cut(s) 524, 554, 867
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 2 cut(s) 146, 585
MaeII ACGT 4 cut(s) 60, 118, 720, 1026
MaeIII GTNAC 2 cut(s) 19, 53
MalI GATC 6 cut(s) 47, 133, 174, 207, 606, 663
MboI GATC 6 cut(s) 45, 131, 172, 205, 604, 661
MflI RGATCY 2 cut(s) 131, 661
MhlI GDGCHC 2 cut(s) 297, 750
MluCI AATT 3 cut(s) 301, 643, 887
MlyI GAGTC 1 cut(s) 1002
MmeI TCCRAC 3 cut(s) 108, 389, 556
MnlI CCTC 9 cut(s) 98, 135, 186, 220, 675, 719, 733, 753, 955
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 950
MslI CAYNNNNRTG 2 cut(s) 191, 399
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 129, 440
MspR9I CCNGG 3 cut(s) 41, 129, 441
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 4 cut(s) 189, 227, 521, 557
NciI CCSGG 2 cut(s) 129, 441
NcoI CCATGG 2 cut(s) 135, 225
NdeI CATATG 1 cut(s) 955
NdeII GATC 6 cut(s) 45, 131, 172, 205, 604, 661
NheI GCTAGC 1 cut(s) 584
NlaIII CATG 7 cut(s) 139, 196, 229, 236, 760, 770, 935
NlaIV GGNNCC 2 cut(s) 133, 296
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 935
PciI ACATGT 1 cut(s) 931
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 6 cut(s) 69, 80, 154, 287, 388, 774
PflMI CCANNNNNTGG 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 6 cut(s) 100, 185, 514, 673, 781, 880
PleI GAGTC 1 cut(s) 1002
PpsI GAGTC 1 cut(s) 1002
Ppu21I YACGTR 2 cut(s) 61, 119
PscI ACATGT 1 cut(s) 931
PsiI TTATAA 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 133, 296
PspPI GGNCC 1 cut(s) 989
PsuI RGATCY 2 cut(s) 131, 661
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 123, 902
RsaNI GTAC 2 cut(s) 122, 901
RseI CAYNNNNRTG 2 cut(s) 191, 399
SaqAI TTAA 1 cut(s) 950
SatI GCNGC 6 cut(s) 99, 184, 513, 672, 780, 879
Sau3AI GATC 6 cut(s) 45, 131, 172, 205, 604, 661
Sau96I GGNCC 1 cut(s) 989
SchI GAGTC 1 cut(s) 1002
ScrFI CCNGG 3 cut(s) 41, 129, 441
SduI GDGCHC 2 cut(s) 297, 750
SexAI ACCWGGT 1 cut(s) 39
SfaNI GCATC 3 cut(s) 524, 554, 867
SinI GGWCC 1 cut(s) 989
SmiMI CAYNNNNRTG 2 cut(s) 191, 399
SmlI CTYRAG 2 cut(s) 611, 980
SmoI CTYRAG 2 cut(s) 611, 980
Sse9I AATT 3 cut(s) 301, 643, 887
SsiI CCGC 3 cut(s) 140, 184, 560
SspMI CTAG 2 cut(s) 146, 585
StyD4I CCNGG 3 cut(s) 39, 127, 439
StyI CCWWGG 3 cut(s) 135, 225, 973
TaaI ACNGT 4 cut(s) 109, 499, 546, 1019
TaiI ACGT 4 cut(s) 63, 121, 723, 1029
TaqI TCGA 3 cut(s) 750, 885, 1044
TasI AATT 3 cut(s) 301, 643, 887
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 6 cut(s) 69, 80, 154, 287, 388, 774
Tru1I TTAA 1 cut(s) 950
Tru9I TTAA 1 cut(s) 950
TscAI CASTG 4 cut(s) 427, 454, 595, 750
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 5 cut(s) 98, 512, 671, 779, 878
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 380, 910
TspGWI ACGGA 2 cut(s) 41, 851
TspRI CASTG 4 cut(s) 427, 454, 595, 750
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 989
XapI RAATTY 1 cut(s) 887
XceI RCATGY 1 cut(s) 935
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 2 cut(s) 146, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.