FvH4_1g18790

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000431
Physical Location & Seq
Reverse (-)
11067119 .. 11067319
201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18790.t1

Sequence Viewer

Length: 201 bp
ATGGAAGGCTTCGTTGTTTTCGACTACTTCCATCTCTACCCCAAGTTCTTGGACATGGTGTTGCCTTACATCAAAGAAGGAAAAATAGTGTATCTAAAAGATATAGTTGAAGGCCTCGACAGTGCTCCAGCTGCTCTTGTAGGACTTTTTAGTGGTCGCAATGTCGGAAAACAAGTGGTTTTGGTTGCTCCGGCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

67

Amino Acids

7.28

Weight (kDa)

5.59

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 192
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 2 cut(s) 131, 198
AluI AGCT 2 cut(s) 131, 198
Alw21I GWGCWC 1 cut(s) 127
AoxI GGCC 2 cut(s) 112, 192
ApeKI GCWGC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 39
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 2 cut(s) 114, 194
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 191
BsnI GGCC 2 cut(s) 114, 194
Bsp1286I GDGCHC 1 cut(s) 127
BspANI GGCC 2 cut(s) 114, 194
BsrDI GCAATG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 114, 194
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 196
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 9, 114, 131, 194, 198
CviKI_1 RGCY 5 cut(s) 9, 114, 131, 194, 198
EaeI YGGCCR 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 114
FaeI CATG 1 cut(s) 58
FaiI YATR 2 cut(s) 56, 104
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 114, 194
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 58
HpaII CCGG 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 71, 104
HpyCH4III ACNGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 58
LmnI GCTCC 2 cut(s) 130, 193
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 131, 198
MspI CCGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 58
PceI AGGCCT 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 1 cut(s) 133
PvuII CAGCTG 2 cut(s) 131, 198
SatI GCNGC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 127
SetI ASST 2 cut(s) 133, 200
SgeI CNNG 7 cut(s) 55, 61, 67, 128, 140, 149, 185
SseBI AGGCCT 1 cut(s) 114
StuI AGGCCT 1 cut(s) 114
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 21, 117
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 131
TspRI CASTG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.