RLG00000013436

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000431
Physical Location & Seq
Forward (+)
31514001 .. 31516272
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013436

Sequence Viewer

Length: 417 bp
ATGAAGTTTGTTCTCCTAAGAAAGGAGAATATGTATGTCTTCATTTCAGCAGCATCAGGTGCCGTTGGTCAGCTGGTTGGACAATTAGCAAAATTGTTGGGTTGTTATGTTGCTGGAAGTGCTGGAAGTAAAGAAAAGGTTGACCTTTTGAAGAATAAGTTAAATTTTGATGAAGCTTTCAACTATAAGGAAGAGCATGACTTAACCGCAGCTCTGAAAAGGTATTTTCCAGAAGGCATTGACATATACTTTGAGAATGTTGGTGGGAAATTTCTGGATGCAGTCCTGCTCAACATGAGAGTCCATGGCCGGATTGCAGTGTGTGGAGTGATATCACAATACAATCTTGAAAAGCCTGATGGTTTGCCATATGACATTTCTTCGTGGGCTGACATAGGACCGGGGATAACCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

139

Amino Acids

15.22

Weight (kDa)

6.28

Isoelectric Point (pI)

14.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 21 - 113 8e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 2 cut(s) 163, 269
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 3 cut(s) 151, 181, 350
AluBI AGCT 3 cut(s) 73, 176, 212
AluI AGCT 3 cut(s) 73, 176, 212
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 50, 209
ApoI RAATTY 2 cut(s) 163, 269
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 62, 221
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 402
BisI GCNGC 2 cut(s) 51, 210
BlsI GCNGC 2 cut(s) 52, 211
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 62, 268
BpiI GAAGAC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 304, 401
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 304, 401
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 62, 221
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 310, 401
BslI CCNNNNNNNGG 1 cut(s) 22
BsnI GGCC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 304, 401
BssT1I CCWWGG 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 304
BstENI CCTNNNNNAGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 59, 119
BstSCI CCNGG 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 62, 221
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 398
CviAII CATG 3 cut(s) 197, 295, 305
CviJI RGCY 6 cut(s) 73, 176, 212, 309, 355, 389
CviKI_1 RGCY 6 cut(s) 73, 176, 212, 309, 355, 389
DdeI CTNAG 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 304
Eco32I GATATC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 20
EcoRV GATATC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 200, 298, 308
FatI CATG 3 cut(s) 196, 294, 304
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 51, 210
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 51, 210
GluI GCNGC 2 cut(s) 51, 210
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 310, 401
Hin1II CATG 3 cut(s) 200, 298, 308
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 300
HpaII CCGG 2 cut(s) 310, 401
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 230, 275, 347
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 281, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 119
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 3 cut(s) 200, 298, 308
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 9 cut(s) 42, 59, 99, 108, 243, 260, 299, 323, 369
Lsp1109I GCAGC 2 cut(s) 62, 221
LweI GCATC 2 cut(s) 62, 268
MboII GAAGA 4 cut(s) 31, 163, 203, 372
MluCI AATT 4 cut(s) 83, 92, 163, 269
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 58
MseI TTAA 2 cut(s) 161, 203
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 310, 401
MspR9I CCNGG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 59, 119
NciI CCSGG 1 cut(s) 402
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 370
NlaIII CATG 3 cut(s) 200, 298, 308
NlaIV GGNNCC 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 52, 211
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 161, 203
SatI GCNGC 2 cut(s) 51, 210
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 402
SetI ASST 7 cut(s) 61, 75, 141, 147, 178, 214, 224
SfaNI GCATC 2 cut(s) 62, 268
SinI GGWCC 1 cut(s) 398
Sse9I AATT 4 cut(s) 83, 92, 163, 269
SsiI CCGC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 304
TasI AATT 4 cut(s) 83, 92, 163, 269
Tru1I TTAA 2 cut(s) 161, 203
Tru9I TTAA 2 cut(s) 161, 203
TscAI CASTG 1 cut(s) 324
TseI GCWGC 2 cut(s) 50, 209
TspDTI ATGAA 3 cut(s) 17, 31, 186
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 20
XapI RAATTY 2 cut(s) 163, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.