Rh2DG278400

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000431
Physical Location & Seq
Reverse (-)
31516815 .. 31518457
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG278400.1

Sequence Viewer

Length: 528 bp
ATGGAAGAAATCCCAGGAGTCGACGAATCTACGTATAGTCAGCGAGTCTACTATACACCCGGCTCGATTGATCTATTGAAGAGCAAGTTCGGATTTGATGACGCTTTTAACTATAAGGAAGAGAGTGACTTGGATGTGGCTTTGAAAAGGTATTTTCCTGAAGGCATTGATATATACTTTGACAATGTTGGCGGCAAAATGCTGGATGCGGTCTTTCTCAACATGAGTGTCCATGGCCGAATTGCTGGTTGTGGAATGATTTCACAGTACAATCTTGATCAGCCAGAAGGGGTGACCAATTTGATGCACCTTGTGTACAAGCGTATACGCTTCCATGGATTTACCGTTCGTGATCACTATCATCTGCATCCCAAATTCTTAGACTTCATTCTGCCTTACATTCAACAAGGGAAGATCGCTTATATAGAAGACATCGTTGAAGGCCTTGAGAATGCTCCAGCAGCACTGTTTGGACTTTTTAAGGGTCACAACATTGGAAAACAAGTAGTTGCAGTTGATCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

175

Amino Acids

19.96

Weight (kDa)

5.29

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 23 - 129 4.3e-12 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 31 - 170 3.3e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 21, 48, 325
AciI CCGC 2 cut(s) 192, 209
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 2 cut(s) 269, 317
AgsI TTSAA 4 cut(s) 79, 145, 404, 440
AjnI CCWGG 1 cut(s) 13
AloI GAACNNNNNNTCC 2 cut(s) 330, 362
AoxI GGCC 2 cut(s) 235, 442
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 473
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 3 cut(s) 277, 352, 517
BcnI CCSGG 1 cut(s) 60
BisI GCNGC 2 cut(s) 193, 462
BlsI GCNGC 2 cut(s) 194, 463
Bme1390I CCNGG 2 cut(s) 15, 60
BmrFI CCNGG 2 cut(s) 15, 60
BmsI GCATC 3 cut(s) 196, 294, 376
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 13, 232, 334
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 13, 232, 334
BseGI GGATG 3 cut(s) 139, 211, 367
BseJI GATNNNNATC 1 cut(s) 357
BseXI GCAGC 1 cut(s) 473
BshFI GGCC 2 cut(s) 237, 444
BsiSI CCGG 1 cut(s) 60
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 237, 444
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 5 cut(s) 70, 277, 352, 414, 517
Bsp19I CCATGG 2 cut(s) 232, 334
BspACI CCGC 2 cut(s) 192, 209
BspANI GGCC 2 cut(s) 237, 444
BspHI TCATGA 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 13, 232, 334
BssMI GATC 5 cut(s) 70, 277, 352, 414, 517
BssNAI GTATAC 1 cut(s) 326
BssT1I CCWWGG 2 cut(s) 232, 334
Bst1107I GTATAC 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 3 cut(s) 267, 346, 468
Bst6I CTCTTC 2 cut(s) 74, 114
BstAUI TGTACA 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 379
BstDSI CCRYGG 2 cut(s) 232, 334
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 3 cut(s) 139, 211, 367
BstKTI GATC 5 cut(s) 73, 280, 355, 417, 520
BstMBI GATC 5 cut(s) 70, 277, 352, 414, 517
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 13, 58
BstSNI TACGTA 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 473
BstV2I GAAGAC 1 cut(s) 435
BstZ17I GTATAC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 237, 444
BtgI CCRYGG 2 cut(s) 232, 334
BtsCI GGATG 3 cut(s) 139, 211, 367
BtsIMutI CAGTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 520
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 268, 316
CviAII CATG 4 cut(s) 223, 233, 335, 521
CviJI RGCY 5 cut(s) 63, 140, 237, 283, 444
CviKI_1 RGCY 5 cut(s) 63, 140, 237, 283, 444
CviQI GTAC 2 cut(s) 268, 316
DdeI CTNAG 1 cut(s) 379
DpnI GATC 5 cut(s) 72, 279, 354, 416, 519
DpnII GATC 5 cut(s) 70, 277, 352, 414, 517
DraIII CACNNNGTG 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 74, 114
EarI CTCTTC 2 cut(s) 74, 114
Eco105I TACGTA 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 232, 334
Eco147I AGGCCT 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 232, 334
ErhI CCWWGG 2 cut(s) 232, 334
FaeI CATG 4 cut(s) 226, 236, 338, 524
FatI CATG 4 cut(s) 222, 232, 334, 520
FbaI TGATCA 3 cut(s) 277, 352, 517
FblI GTMKAC 3 cut(s) 21, 48, 325
Fnu4HI GCNGC 2 cut(s) 193, 462
FokI GGATG 3 cut(s) 146, 218, 354
Fsp4HI GCNGC 2 cut(s) 193, 462
GluI GCNGC 2 cut(s) 193, 462
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 237, 444
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 110
Hin1II CATG 4 cut(s) 226, 236, 338, 524
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 18, 26, 45
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 4 cut(s) 22, 49, 316, 326
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 4 cut(s) 158, 275, 350, 521
Hpy8I GTNNAC 4 cut(s) 22, 49, 316, 326
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 155, 281, 434
HpyCH4III ACNGT 3 cut(s) 267, 346, 468
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 307, 367, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 379
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 4 cut(s) 226, 236, 338, 524
Ksp22I TGATCA 3 cut(s) 277, 352, 517
Kzo9I GATC 5 cut(s) 70, 277, 352, 414, 517
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 7 cut(s) 27, 73, 171, 188, 231, 297, 471
Lsp1109I GCAGC 1 cut(s) 473
LweI GCATC 3 cut(s) 196, 294, 376
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 125, 292, 485
MalI GATC 5 cut(s) 72, 279, 354, 416, 519
MboI GATC 5 cut(s) 70, 277, 352, 414, 517
MboII GAAGA 5 cut(s) 17, 91, 131, 424, 440
MluCI AATT 3 cut(s) 240, 298, 374
MlyI GAGTC 2 cut(s) 27, 54
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 2 cut(s) 108, 480
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 15, 60
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 461
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 2 cut(s) 232, 334
NdeII GATC 5 cut(s) 70, 277, 352, 414, 517
NlaIII CATG 4 cut(s) 226, 236, 338, 524
NmuCI GTSAC 3 cut(s) 125, 292, 485
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 74
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 194, 463
PleI GAGTC 2 cut(s) 26, 53
PpsI GAGTC 2 cut(s) 26, 53
Ppu21I YACGTR 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 13
RsaI GTAC 2 cut(s) 269, 317
RsaNI GTAC 2 cut(s) 268, 316
SalI GTCGAC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 108, 480
SatI GCNGC 2 cut(s) 193, 462
Sau3AI GATC 5 cut(s) 70, 277, 352, 414, 517
SchI GAGTC 2 cut(s) 27, 54
ScrFI CCNGG 2 cut(s) 15, 60
SetI ASST 3 cut(s) 35, 152, 312
SfaNI GCATC 3 cut(s) 196, 294, 376
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SnaBI TACGTA 1 cut(s) 33
Sse9I AATT 3 cut(s) 240, 298, 374
SseBI AGGCCT 1 cut(s) 444
SsiI CCGC 2 cut(s) 192, 209
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 13, 58
StyI CCWWGG 2 cut(s) 232, 334
TaaI ACNGT 3 cut(s) 267, 346, 468
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 21, 65
TasI AATT 3 cut(s) 240, 298, 374
TatI WGTACW 2 cut(s) 267, 315
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 108, 480
Tru9I TTAA 2 cut(s) 108, 480
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 3 cut(s) 125, 292, 485
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 3 cut(s) 125, 292, 485
TspDTI ATGAA 1 cut(s) 376
TspRI CASTG 1 cut(s) 471
XapI RAATTY 1 cut(s) 374
XmiI GTMKAC 3 cut(s) 21, 48, 325
XmnI GAANNNNTTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.