Rh2DG004100

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000431
Physical Location & Seq
Forward (+)
269333 .. 270901
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG004100.1

Sequence Viewer

Length: 540 bp
ATGATGCAATTCCTCATTAGGAATAACTCTCAGCAGAAAATGAGAAAATACGTCTATTGCACTCCTGGCTCTGTTGATCTACTGAAGAACAAGTTGGGGTTTGATGAGGCTTTCAATTACAAGGAGGAGAACGATTTAGAAGCAGCTTTGAAAAGGTACTTTCCTGAAGGAATTGACGTCTACTTTGAGCATGTGGGTGGGAAATTGTTTGACGCAGTGCTGCTCAACATGAAAGAACACGGTCGCATTGCTGTGTGCGGAATGATTTCACAATACAACCTTCCCGAGCCTGAGCCACTCAAAAACCTGTTCCAGATTGCGTTGAAGCGGCTCAATATACATGGATTTACGCATCGCGATTACGATCACATAGTACCCAAGTACTATGAGTTTGTGCTGCCTTACATCCGGGAAGGTAAAATAGTGTATGTGGAAGACATAGTTGAAGGGCTTGAGAATGGTCCAGCAGCACTGGTTGGACTCTTTACTGGTCGCAACTTTGGGAAGCAAGTAGTTGCAGTTGCACCACCTCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

179

Amino Acids

20.57

Weight (kDa)

6.52

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 26 - 123 5.8e-15 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 32 - 172 2.8e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 357
AciI CCGC 2 cut(s) 258, 328
AcuI CTGAAG 2 cut(s) 104, 186
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 3 cut(s) 158, 375, 383
AgsI TTSAA 4 cut(s) 115, 151, 325, 446
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 143, 220, 397, 467
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp700I GAANNNNTTC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 155, 207, 384, 479
BciT130I CCWGG 1 cut(s) 66
BcnI CCSGG 1 cut(s) 410
BisI GCNGC 5 cut(s) 144, 221, 329, 398, 468
BlsI GCNGC 5 cut(s) 145, 222, 330, 399, 469
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 66, 410
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 2 cut(s) 66, 410
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 477, 493
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 363
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 44, 282
BseNI ACTGG 2 cut(s) 477, 493
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 4 cut(s) 155, 207, 384, 479
Bsh1236I CGCG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 409
BsoBI CYCGRG 1 cut(s) 284
Bsp143I GATC 2 cut(s) 76, 364
Bsp68I TCGCGA 1 cut(s) 357
BspACI CCGC 2 cut(s) 258, 328
BspCNI CTCAG 2 cut(s) 43, 283
BspFNI CGCG 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 2 cut(s) 477, 493
BssMI GATC 2 cut(s) 76, 364
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 30, 291
BstF5I GGATG 1 cut(s) 405
BstFNI CGCG 1 cut(s) 357
BstKTI GATC 2 cut(s) 79, 367
BstMBI GATC 2 cut(s) 76, 364
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 64, 408
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 155, 207, 384, 479
BstV2I GAAGAC 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 470
BtuMI TCGCGA 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 461
CseI GACGC 1 cut(s) 221
Csp6I GTAC 3 cut(s) 157, 374, 382
CviAII CATG 3 cut(s) 191, 229, 341
CviJI RGCY 7 cut(s) 69, 110, 146, 289, 295, 331, 451
CviKI_1 RGCY 7 cut(s) 69, 110, 146, 289, 295, 331, 451
CviQI GTAC 3 cut(s) 157, 374, 382
DdeI CTNAG 2 cut(s) 30, 291
DpnI GATC 2 cut(s) 78, 366
DpnII GATC 2 cut(s) 76, 364
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 2 cut(s) 104, 186
Eco88I CYCGRG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 194, 232, 344
FaiI YATR 8 cut(s) 192, 230, 338, 342, 371, 387, 429, 440
FatI CATG 3 cut(s) 190, 228, 340
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 5 cut(s) 144, 221, 329, 398, 468
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 5 cut(s) 144, 221, 329, 398, 468
GluI GCNGC 5 cut(s) 144, 221, 329, 398, 468
HapII CCGG 1 cut(s) 409
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 3 cut(s) 194, 232, 344
HinfI GANTC 1 cut(s) 480
HpaII CCGG 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 4 cut(s) 164, 284, 313, 356
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 4 cut(s) 161, 290, 407, 440
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 51, 177
HpyCH4V TGCA 4 cut(s) 7, 60, 518, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 2 cut(s) 30, 291
HpySE526I ACGT 2 cut(s) 51, 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 3 cut(s) 194, 232, 344
Kzo9I GATC 2 cut(s) 76, 364
Lsp1109I GCAGC 4 cut(s) 155, 207, 384, 479
LweI GCATC 1 cut(s) 361
MaeII ACGT 2 cut(s) 51, 177
MalI GATC 2 cut(s) 78, 366
MboI GATC 2 cut(s) 76, 364
MboII GAAGA 2 cut(s) 97, 446
MluCI AATT 4 cut(s) 8, 115, 171, 203
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 4 cut(s) 23, 100, 118, 540
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 1 cut(s) 538
MslI CAYNNNNRTG 2 cut(s) 195, 251
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 66, 410
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 410
NdeII GATC 2 cut(s) 76, 364
NlaIII CATG 3 cut(s) 194, 232, 344
NruI TCGCGA 1 cut(s) 357
NspI RCATGY 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 265
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 5 cut(s) 145, 222, 330, 399, 469
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspPI GGNCC 1 cut(s) 461
RruI TCGCGA 1 cut(s) 357
RsaI GTAC 3 cut(s) 158, 375, 383
RsaNI GTAC 3 cut(s) 157, 374, 382
RseI CAYNNNNRTG 2 cut(s) 195, 251
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 5 cut(s) 144, 221, 329, 398, 468
Sau3AI GATC 2 cut(s) 76, 364
Sau96I GGNCC 1 cut(s) 461
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 2 cut(s) 66, 410
SetI ASST 9 cut(s) 54, 148, 158, 180, 282, 309, 418, 532, 538
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 195, 251
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 4 cut(s) 8, 115, 171, 203
SsiI CCGC 2 cut(s) 258, 328
StyD4I CCNGG 2 cut(s) 64, 408
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 2 cut(s) 54, 180
TasI AATT 4 cut(s) 8, 115, 171, 203
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TscAI CASTG 2 cut(s) 222, 477
TseI GCWGC 4 cut(s) 143, 220, 397, 467
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 222, 477
VpaK11BI GGWCC 1 cut(s) 461
XceI RCATGY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 265
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.