RchiOBHm_Chr2g0109651

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000431
Physical Location & Seq
Reverse (-)
21021601 .. 21024203
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48346

Sequence Viewer

Length: 1056 bp
ATGGCGAGTGGTGAGGGGGAAGTGATGAGGAACAAGCAGGTGATATTCAGGGACTATGTGACTGGCAATCCCAAAGAGTCGGACATGTACGTGACAGACAGTAGTACCATTAAGCTCAAGGCTCCACAGGGCTCAGTCGCGGTGCTGGTCAAGAACCTTTACTTGGCGTGTGACCCTTATTTGAGGATCCGAATGGGGCGAATTGAAGGTTCTAGTGTCTTCACTTCCTTCACCCCTGGCTCTCCATTGAGTGGATTTGGAGTGGCTAAAGTCTTGGATTCCGGGCATCCGGAGTTTAAGGAAGGTGACTTGGTTTGGGGAACAACCGGATGGGAAGAGTACAGTCTCATCACAGAACCAGAACAACTCTTCAAGATCCACCACACTGACGTGCCCCTTTCCTACTATACTGGACTTCTTGGTGTGCCGGGTATGACTGCCTTTGTCGGTTTCCATGAAGTGTGCTCGCCTAAAAGAGGAGATTCTGTGTTCGTTTCTGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTGATGGGGTGCTATGTTGTTGGAAGTGTTGGAAGCAAAGAGAAGGTCGATCTACTAAAGAACAAGCTAGGGTTTGATGAGGCTTTCAATTATAAGGAAGAGCATGACCTTGATGCTGCTTTGAAAAGGACGTACTTCCCAAAAGGCATTGATATTTACTTCGAGAACGTTGGAGGTAAAATGCTGGATGCAGTCCTTCTCAACATGAGACCTCATGGCCATATTTCCGTGTGTGGCATGATCTCACACTACAATCTCAATCAGCCACAAGGCTTTAGCAATCTCACCTCTCTCATCTACAATCGGATTCGTATGGAAGGCTTCGTTGTTTTCGATTACTTCCATCTCTATCCCAAGTTCTTGGACATGGTGTTGCCTTACATCAGAGAAGGAAAAATAGTGTATCTGGAAGATATAGTTGAAGGCCTCGAGCGTGGTCCGGCTACTCTTGTAGGGCTCTTTAGTGGTCGTAATGTCGGAAAACAAGTAGTTTTGGTTGCTCCAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

351

Amino Acids

38.74

Weight (kDa)

6.02

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 12 - 126 2.6e-21 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 171 - 305 1.5e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 1 cut(s) 140
AclI AACGTT 1 cut(s) 711
AclWI GGATC 3 cut(s) 181, 194, 370
AcoI YGGCCR 1 cut(s) 760
AfaI GTAC 4 cut(s) 89, 106, 341, 677
AfiI CCNNNNNNNGG 3 cut(s) 163, 251, 476
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 5 cut(s) 206, 373, 631, 667, 965
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 5 cut(s) 115, 506, 523, 610, 1049
AluI AGCT 5 cut(s) 115, 506, 523, 610, 1049
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 350, 745
AlwI GGATC 3 cut(s) 181, 194, 370
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 2 cut(s) 760, 967
ApeKI GCWGC 3 cut(s) 500, 503, 659
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AspS9I GGNCC 1 cut(s) 980
AsuC2I CCSGG 2 cut(s) 283, 429
AsuHPI GGTGA 5 cut(s) 23, 52, 223, 317, 820
AvaI CYCGRG 1 cut(s) 971
AvaII GGWCC 1 cut(s) 980
BaeGI GKGCMC 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BalI TGGCCA 1 cut(s) 762
BamHI GGATCC 1 cut(s) 186
BanII GRGCYC 2 cut(s) 134, 1002
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 512, 515, 646
BccI CCATC 3 cut(s) 324, 541, 894
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 2 cut(s) 283, 429
BcoDI GTCTC 2 cut(s) 350, 745
BfaI CTAG 2 cut(s) 213, 611
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 3 cut(s) 501, 504, 660
BlsI GCNGC 3 cut(s) 502, 505, 661
Bme1390I CCNGG 3 cut(s) 237, 283, 429
Bme18I GGWCC 1 cut(s) 980
BmeT110I CYCGRG 1 cut(s) 971
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 980
BmiI GGNNCC 2 cut(s) 123, 188
BmrFI CCNGG 3 cut(s) 237, 283, 429
BmsI GCATC 3 cut(s) 295, 646, 721
BpiI GAAGAC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 283, 429
BsaAI YACGTR 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 745
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 289, 326
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 251, 476
Bse1I ACTGG 2 cut(s) 67, 415
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 3 cut(s) 286, 335, 736
BseLI CCNNNNNNNGG 3 cut(s) 163, 251, 476
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 67, 415
BseRI GAGGAG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 3 cut(s) 512, 515, 646
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 762, 969
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 5 cut(s) 282, 290, 327, 428, 983
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 163, 251, 476
BsmAI GTCTC 2 cut(s) 350, 745
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 762, 969
Bso31I GGTCTC 1 cut(s) 745
BsoBI CYCGRG 1 cut(s) 971
Bsp1286I GDGCHC 4 cut(s) 134, 396, 467, 1002
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 4 cut(s) 186, 375, 592, 783
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 762, 969
BspCNI CTCAG 1 cut(s) 146
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 123, 188
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 3 cut(s) 181, 194, 370
BspQI GCTCTTC 1 cut(s) 636
BspTNI GGTCTC 1 cut(s) 745
BsrI ACTGG 2 cut(s) 67, 415
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 4 cut(s) 186, 375, 592, 783
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 101, 344
Bst6I CTCTTC 3 cut(s) 330, 374, 636
BstAPI GCANNNNNTGC 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 286, 335, 736
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 4 cut(s) 189, 378, 595, 786
BstMAI GTCTC 2 cut(s) 350, 745
BstMBI GATC 4 cut(s) 186, 375, 592, 783
BstMWI GCNNNNNNNGC 2 cut(s) 509, 529
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 235, 281, 427
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 396
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 512, 515, 646
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 2 cut(s) 186, 375
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 186, 375
BsuRI GGCC 2 cut(s) 762, 969
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 3 cut(s) 286, 335, 736
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 980
Csp6I GTAC 4 cut(s) 88, 105, 340, 676
CviAII CATG 7 cut(s) 85, 455, 647, 748, 758, 781, 910
CviQI GTAC 4 cut(s) 88, 105, 340, 676
DdeI CTNAG 1 cut(s) 133
DpnI GATC 4 cut(s) 188, 377, 594, 785
DpnII GATC 4 cut(s) 186, 375, 592, 783
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 3 cut(s) 330, 374, 636
EarI CTCTTC 3 cut(s) 330, 374, 636
Eco147I AGGCCT 1 cut(s) 969
Eco24I GRGCYC 2 cut(s) 134, 1002
Eco31I GGTCTC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 971
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 134, 1002
FaeI CATG 7 cut(s) 88, 458, 650, 751, 761, 784, 913
FaqI GGGAC 1 cut(s) 65
FatI CATG 7 cut(s) 84, 454, 646, 747, 757, 780, 909
Fnu4HI GCNGC 3 cut(s) 501, 504, 660
FokI GGATG 3 cut(s) 273, 342, 743
FriOI GRGCYC 2 cut(s) 134, 1002
Fsp4HI GCNGC 3 cut(s) 501, 504, 660
FspBI CTAG 2 cut(s) 213, 611
GluI GCNGC 3 cut(s) 501, 504, 660
GsuI CTGGAG 1 cut(s) 1029
HaeIII GGCC 2 cut(s) 762, 969
HapII CCGG 5 cut(s) 282, 290, 327, 428, 983
Hin1II CATG 7 cut(s) 88, 458, 650, 751, 761, 784, 913
HinfI GANTC 4 cut(s) 77, 278, 482, 850
HpaII CCGG 5 cut(s) 282, 290, 327, 428, 983
HphI GGTGA 5 cut(s) 23, 52, 223, 317, 820
Hpy188I TCNGA 5 cut(s) 82, 191, 849, 929, 1022
Hpy188III TCNNGA 5 cut(s) 151, 290, 373, 706, 950
HpyAV CCTTC 8 cut(s) 200, 238, 296, 580, 749, 854, 926, 959
HpyCH4III ACNGT 2 cut(s) 101, 344
HpyCH4IV ACGT 4 cut(s) 90, 390, 674, 711
HpyCH4V TGCA 3 cut(s) 500, 539, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 529
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 4 cut(s) 90, 390, 674, 711
Hsp92II CATG 7 cut(s) 88, 458, 650, 751, 761, 784, 913
Kpn2I TCCGGA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 186, 375, 592, 783
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 2 cut(s) 127, 1048
Lsp1109I GCAGC 3 cut(s) 512, 515, 646
LweI GCATC 3 cut(s) 295, 646, 721
MaeI CTAG 2 cut(s) 213, 611
MaeII ACGT 4 cut(s) 90, 390, 674, 711
MaeIII GTNAC 4 cut(s) 58, 91, 170, 305
MalI GATC 4 cut(s) 188, 377, 594, 785
MboI GATC 4 cut(s) 186, 375, 592, 783
MboII GAAGA 5 cut(s) 211, 347, 361, 653, 965
MflI RGATCY 2 cut(s) 186, 375
MhlI GDGCHC 4 cut(s) 134, 396, 467, 1002
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 3 cut(s) 201, 533, 631
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 5 cut(s) 60, 544, 553, 694, 1000
MnlI CCTC 9 cut(s) 7, 21, 177, 470, 616, 710, 765, 841, 980
Mox20I TGGCCA 1 cut(s) 762
MroI TCCGGA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 762
MseI TTAA 2 cut(s) 111, 297
MslI CAYNNNNRTG 2 cut(s) 89, 389
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 2 cut(s) 506, 1049
MspI CCGG 5 cut(s) 282, 290, 327, 428, 983
MspR9I CCNGG 3 cut(s) 237, 283, 429
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 509, 529
NciI CCSGG 2 cut(s) 283, 429
NdeII GATC 4 cut(s) 186, 375, 592, 783
NlaIII CATG 7 cut(s) 88, 458, 650, 751, 761, 784, 913
NlaIV GGNNCC 2 cut(s) 123, 188
NmuCI GTSAC 4 cut(s) 58, 91, 170, 305
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 971
PaqCI CACCTGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 969
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PfeI GAWTC 3 cut(s) 278, 482, 850
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 502, 505, 661
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 91
PscI ACATGT 1 cut(s) 84
PsiI TTATAA 1 cut(s) 636
Psp1406I AACGTT 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 123, 188
PspPI GGNCC 1 cut(s) 980
PspXI VCTCGAGB 1 cut(s) 971
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 186, 375
PvuII CAGCTG 2 cut(s) 506, 1049
RsaI GTAC 4 cut(s) 89, 106, 341, 677
RsaNI GTAC 4 cut(s) 88, 105, 340, 676
RseI CAYNNNNRTG 2 cut(s) 89, 389
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 2 cut(s) 111, 297
SatI GCNGC 3 cut(s) 501, 504, 660
Sau3AI GATC 4 cut(s) 186, 375, 592, 783
Sau96I GGNCC 1 cut(s) 980
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 237, 283, 429
SduI GDGCHC 4 cut(s) 134, 396, 467, 1002
SfaNI GCATC 3 cut(s) 295, 646, 721
SfcI CTRYAG 1 cut(s) 498
Sfr274I CTCGAG 1 cut(s) 971
SinI GGWCC 1 cut(s) 980
SlaI CTCGAG 1 cut(s) 971
SmiMI CAYNNNNRTG 2 cut(s) 89, 389
SmlI CTYRAG 2 cut(s) 116, 971
SmoI CTYRAG 2 cut(s) 116, 971
Sse9I AATT 3 cut(s) 201, 533, 631
SseBI AGGCCT 1 cut(s) 969
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 213, 611
StuI AGGCCT 1 cut(s) 969
StyD4I CCNGG 3 cut(s) 235, 281, 427
TaaI ACNGT 2 cut(s) 101, 344
TaiI ACGT 4 cut(s) 93, 393, 677, 714
TaqI TCGA 4 cut(s) 591, 705, 876, 972
TasI AATT 3 cut(s) 201, 533, 631
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 3 cut(s) 278, 482, 850
Tru1I TTAA 2 cut(s) 111, 297
Tru9I TTAA 2 cut(s) 111, 297
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 4 cut(s) 58, 91, 170, 305
TseI GCWGC 3 cut(s) 500, 503, 659
Tsp45I GTSAC 4 cut(s) 58, 91, 170, 305
TspDTI ATGAA 1 cut(s) 471
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 980
XagI CCTNNNNNAGG 1 cut(s) 474
XceI RCATGY 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 971
XspI CTAG 2 cut(s) 213, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.