Rroxscaffold_2G00155890

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000431
Physical Location & Seq
Reverse (-)
92364139 .. 92371666
7528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155890.1

Sequence Viewer

Length: 297 bp
ATGCTGGTTTCCCAAGTGTGGGCAGCCTTCTCATTGAGGCATGTTGGCAAGGCCGGGAAGGTGGCTTCCGGCGACGGATTTGTGACTTCCGGATACCGTAGTTCAATTCGTGGGTATGGTGTGTCTCAAGTTGTGGACTCGAGTCATCCAGAGTATAAACAAGGTGATTTGGTGTGGGGGTTAACCACATGGGAAGAGTACAGCCTCATCACAGATATCGTCCCTGAAACCTCACTTGTTAAAATACACCACACTGATGTCCCTCTTTCTTACTATACTGGACTTCTTGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

98

Amino Acids

10.7

Weight (kDa)

6.01

Isoelectric Point (pI)

21.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 34 - 70 3.4e-08 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 89
AfaI GTAC 2 cut(s) 200, 292
AfiI CCNNNNNNNGG 2 cut(s) 18, 19
AgsI TTSAA 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 139
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 85, 118
BbvI GCAGC 1 cut(s) 35
BciVI GTATCC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 129
BfuI GTATCC 1 cut(s) 86
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 55
BoxI GACNNNNGTC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 19
Bse1I ACTGG 1 cut(s) 283
BseAI TCCGGA 1 cut(s) 89
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 18, 19
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 3 cut(s) 54, 69, 90
BslFI GGGAC 2 cut(s) 206, 245
BslI CCNNNNNNNGG 2 cut(s) 18, 19
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 2 cut(s) 206, 245
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 139
Bsp13I TCCGGA 1 cut(s) 89
BspANI GGCC 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 89
BsrI ACTGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 294
BstF5I GGATG 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 44
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 252
Csp6I GTAC 2 cut(s) 199, 291
CviAII CATG 2 cut(s) 41, 189
CviJI RGCY 4 cut(s) 26, 53, 65, 204
CviKI_1 RGCY 4 cut(s) 26, 53, 65, 204
CviQI GTAC 2 cut(s) 199, 291
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco105I TACGTA 1 cut(s) 294
Eco32I GATATC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 139
EcoRV GATATC 1 cut(s) 217
FaeI CATG 2 cut(s) 44, 192
FaiI YATR 5 cut(s) 42, 117, 156, 190, 276
FaqI GGGAC 2 cut(s) 206, 245
FatI CATG 2 cut(s) 40, 188
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 53
HapII CCGG 3 cut(s) 54, 69, 90
Hin1II CATG 2 cut(s) 44, 192
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 2 cut(s) 137, 142
HpaI GTTAAC 1 cut(s) 183
HpaII CCGG 3 cut(s) 54, 69, 90
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 136, 183
Hpy188III TCNNGA 2 cut(s) 90, 149
Hpy8I GTNNAC 2 cut(s) 136, 183
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 37, 52
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 2 cut(s) 44, 192
Kpn2I TCCGGA 1 cut(s) 89
KspAI GTTAAC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 67, 82, 103, 162, 237, 264
Lsp1109I GCAGC 1 cut(s) 35
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 105
MlyI GAGTC 2 cut(s) 131, 151
MnlI CCTC 4 cut(s) 30, 215, 241, 273
MroI TCCGGA 1 cut(s) 89
MseI TTAA 2 cut(s) 182, 240
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 3 cut(s) 54, 69, 90
MspR9I CCNGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 55
NlaIII CATG 2 cut(s) 44, 192
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 2 cut(s) 131, 150
PpsI GAGTC 2 cut(s) 131, 150
Ppu21I YACGTR 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 139
RsaI GTAC 2 cut(s) 200, 292
RsaNI GTAC 2 cut(s) 199, 291
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 182, 240
SatI GCNGC 1 cut(s) 24
SchI GAGTC 2 cut(s) 131, 151
ScrFI CCNGG 1 cut(s) 55
SetI ASST 4 cut(s) 63, 166, 233, 296
Sfr274I CTCGAG 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 126, 139
SmoI CTYRAG 2 cut(s) 126, 139
SnaBI TACGTA 1 cut(s) 294
Sse9I AATT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 198
Tru1I TTAA 2 cut(s) 182, 240
Tru9I TTAA 2 cut(s) 182, 240
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 259
XceI RCATGY 1 cut(s) 44
XhoI CTCGAG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.