Rorug01G0455500

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000431
Physical Location & Seq
Reverse (-)
54991211 .. 54991594
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0455500.1

Sequence Viewer

Length: 384 bp
ATGAGTGGTGGATCATCCATACATTCTGGTTCTGTGTTGGCTCGGCTTCTATGGCTGGTCATCGTTTCGACTGCTGCTACCTGTTGTTGTCCTTCCAGTGCTGCTGCTGGGAATATCAGTACTTCGAACGATGTTATTGTTCGGTGTATGGAGAGGGAAAAACATGCTCTTCTTCAGTTCAAACAAGGGTTGGTGGATCGCTCATATGCTCTAGCCTCTTGGGAAAGCAAGGAAGACTGCTGCGAGTGGAGCGGAGTTACATGCGACAACCAAACAGGTCATGTCATCATGCTAAATCTCTTCAATCTTCCTTTAAGAGGTGAGATTGGTCCCTCACTACTTGAGTTGCCATATCTATATTACTTGGACCTGGGTGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

127

Amino Acids

13.74

Weight (kDa)

5.19

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 52 - 89 8.5e-15 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 252
AciI CCGC 1 cut(s) 252
AclWI GGATC 2 cut(s) 19, 204
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 181, 304
AjnI CCWGG 1 cut(s) 369
AlwI GGATC 2 cut(s) 19, 204
ApeKI GCWGC 4 cut(s) 74, 101, 104, 240
AspS9I GGNCC 2 cut(s) 329, 367
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 329, 367
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 4 cut(s) 61, 88, 91, 227
BciT130I CCWGG 1 cut(s) 371
BfaI CTAG 1 cut(s) 212
BisI GCNGC 4 cut(s) 75, 102, 105, 241
BlsI GCNGC 4 cut(s) 76, 103, 106, 242
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 2 cut(s) 329, 367
BmgT120I GGNCC 2 cut(s) 329, 367
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 4 cut(s) 61, 88, 91, 227
BseYI CCCAGC 1 cut(s) 107
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 125
Bsp143I GATC 2 cut(s) 11, 196
BspACI CCGC 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 2 cut(s) 19, 204
BspQI GCTCTTC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 11, 196
Bst2UI CCWGG 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 174, 305
BstBI TTCGAA 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 2 cut(s) 14, 199
BstMBI GATC 2 cut(s) 11, 196
BstMWI GCNNNNNNNGC 2 cut(s) 52, 249
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 167, 264
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 61, 88, 91, 227
BstV2I GAAGAC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 329, 367
Csp6I GTAC 1 cut(s) 120
CviAII CATG 4 cut(s) 164, 261, 281, 289
CviJI RGCY 4 cut(s) 41, 46, 55, 215
CviKI_1 RGCY 4 cut(s) 41, 46, 55, 215
CviQI GTAC 1 cut(s) 120
DpnI GATC 2 cut(s) 13, 198
DpnII GATC 2 cut(s) 11, 196
Eam1104I CTCTTC 2 cut(s) 174, 305
EarI CTCTTC 2 cut(s) 174, 305
Eco47I GGWCC 2 cut(s) 329, 367
Eco57I CTGAAG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 369
FaeI CATG 4 cut(s) 167, 264, 284, 292
FaqI GGGAC 1 cut(s) 315
FatI CATG 4 cut(s) 163, 260, 280, 288
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 75, 102, 105, 241
Fsp4HI GCNGC 4 cut(s) 75, 102, 105, 241
FspBI CTAG 1 cut(s) 212
GluI GCNGC 4 cut(s) 75, 102, 105, 241
GsaI CCCAGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 167, 264, 284, 292
HphI GGTGA 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 249
Hsp92II CATG 4 cut(s) 167, 264, 284, 292
Kzo9I GATC 2 cut(s) 11, 196
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 7 cut(s) 12, 41, 93, 94, 109, 261, 356
Lsp1109I GCAGC 4 cut(s) 61, 88, 91, 227
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 13, 198
MbiI CCGCTC 1 cut(s) 252
MboI GATC 2 cut(s) 11, 196
MboII GAAGA 5 cut(s) 161, 164, 245, 292, 299
MluCI AATT 1 cut(s) 379
MnlI CCTC 4 cut(s) 147, 226, 311, 343
MseI TTAA 2 cut(s) 314, 382
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 52, 249
NdeI CATATG 1 cut(s) 205
NdeII GATC 2 cut(s) 11, 196
NlaIII CATG 4 cut(s) 167, 264, 284, 292
NlaIV GGNNCC 1 cut(s) 331
NmeAIII GCCGAG 1 cut(s) 22
NspI RCATGY 2 cut(s) 167, 264
NspV TTCGAA 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 174
PkrI GCNGC 4 cut(s) 76, 103, 106, 242
Psp6I CCWGG 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 2 cut(s) 329, 367
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 314, 382
SatI GCNGC 4 cut(s) 75, 102, 105, 241
Sau3AI GATC 2 cut(s) 11, 196
Sau96I GGNCC 2 cut(s) 329, 367
ScaI AGTACT 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 371
SetI ASST 4 cut(s) 83, 280, 322, 372
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 2 cut(s) 329, 367
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 1 cut(s) 379
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 369
TaqI TCGA 2 cut(s) 68, 125
TasI AATT 1 cut(s) 379
TatI WGTACW 1 cut(s) 119
Tru1I TTAA 2 cut(s) 314, 382
Tru9I TTAA 2 cut(s) 314, 382
TscAI CASTG 1 cut(s) 103
TseI GCWGC 4 cut(s) 74, 101, 104, 240
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 329, 367
XagI CCTNNNNNAGG 1 cut(s) 315
XceI RCATGY 2 cut(s) 167, 264
XspI CTAG 1 cut(s) 212
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.