Rh2CG269100

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000431
Physical Location & Seq
Forward (+)
29194831 .. 29195934
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG269100.1

Sequence Viewer

Length: 660 bp
ATGACGTTAGTGAGAAACAAACAGGTGATATTGAGGAACTATGTCACCACTTTTCCGAAAGATTCGGACTTGTATGTGACCAGCACTACTGCTAGTGACAAGTTCAAGCTTCCTGCTCACACTATCATTACCACTTCAAAGGAACCAGCCGTCATAGTGAAGAACCTCTACTTGTCTTGCGATCCCTACCAGCGGCTCTTTATGGAAGAAATCCCAGGAGTCGACGAATCTACGTATAGTCAGCGAGTCTACTATACACCCGGCTCGCCAATATATGGGTATGGAGTCGCTGAAGTGTTGGACTCACACCACCCAGATTTTAAGGCAGGTGACTTTGTTTGGGGGACTACTAATTGGGAGCAATACAGCCTTATCACTACACCCAAAAGCCTCATCAAAATCCAGCACACTGATACTGATGTACCCCTTTCCTACTATGCTGGAATTCTTGGTACAACTGGTTTGACCGCTTACGTTGGTTTCTATGAATTCTGTTCTCCGAAGAAAGGAGAAAATGTGTTTGTTTCAGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGCCAAATTGCTAAACTAATGGGTTGTTATGTTGTTGGAAGTGCTGGTACTAAGCAAAAGGTTATTATAATTAATAAATCATCAAAACTATATTCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

219

Amino Acids

24.16

Weight (kDa)

7.65

Isoelectric Point (pI)

24.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 28 - 133 6.7e-18 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AarI CACCTGC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 275
AccI GTMKAC 2 cut(s) 222, 249
AciI CCGC 2 cut(s) 193, 468
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 559
AcsI RAATTY 2 cut(s) 444, 488
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 3 cut(s) 423, 454, 607
AfiI CCNNNNNNNGG 3 cut(s) 192, 275, 506
AgsI TTSAA 2 cut(s) 106, 138
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 109, 536, 553
AluI AGCT 3 cut(s) 109, 536, 553
AlwI GGATC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 536
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 2 cut(s) 530, 533
ApoI RAATTY 2 cut(s) 444, 488
AseI ATTAAT 1 cut(s) 630
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 3 cut(s) 37, 37, 341
BaeI ACNNNNGTAYC 4 cut(s) 405, 405, 438, 438
BalI TGGCCA 1 cut(s) 561
BarI GAAGNNNNNNTAC 4 cut(s) 152, 184, 589, 621
BbvI GCAGC 2 cut(s) 542, 545
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 194, 531, 534
BlsI GCNGC 3 cut(s) 195, 532, 535
Bme1390I CCNGG 2 cut(s) 216, 261
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 216, 261
BpuMI CCSGG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 275, 506
Bse1I ACTGG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 192, 275, 506
BseNI ACTGG 1 cut(s) 463
BseXI GCAGC 2 cut(s) 542, 545
BshFI GGCC 1 cut(s) 561
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 3 cut(s) 192, 275, 506
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 1 cut(s) 561
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 2 cut(s) 193, 468
BspANI GGCC 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 609
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 214, 259
BstSNI TACGTA 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 542, 545
BsuRI GGCC 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 266
CaiI CAGNNNCTG 1 cut(s) 536
Csp6I GTAC 3 cut(s) 422, 453, 606
CviJI RGCY 9 cut(s) 109, 149, 196, 264, 369, 390, 536, 553, 561
CviKI_1 RGCY 9 cut(s) 109, 149, 196, 264, 369, 390, 536, 553, 561
CviQI GTAC 3 cut(s) 422, 453, 606
DdeI CTNAG 1 cut(s) 609
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 559
Eco105I TACGTA 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 312
EcoRI GAATTC 2 cut(s) 444, 488
EcoRII CCWGG 1 cut(s) 214
FaqI GGGAC 1 cut(s) 358
FblI GTMKAC 2 cut(s) 222, 249
Fnu4HI GCNGC 3 cut(s) 194, 531, 534
Fsp4HI GCNGC 3 cut(s) 194, 531, 534
FspBI CTAG 1 cut(s) 93
GluI GCNGC 3 cut(s) 194, 531, 534
HaeIII GGCC 1 cut(s) 561
HapII CCGG 1 cut(s) 261
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 6 cut(s) 62, 219, 227, 246, 285, 302
HpaII CCGG 1 cut(s) 261
HphI GGTGA 3 cut(s) 37, 37, 341
Hpy166II GTNNAC 2 cut(s) 223, 250
Hpy188I TCNGA 4 cut(s) 57, 67, 501, 655
Hpy8I GTNNAC 2 cut(s) 223, 250
Hpy99I CGWCG 1 cut(s) 227
HpyCH4IV ACGT 3 cut(s) 5, 233, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 3 cut(s) 5, 233, 474
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 542, 545
MaeI CTAG 1 cut(s) 93
MaeII ACGT 3 cut(s) 5, 233, 474
MaeIII GTNAC 4 cut(s) 43, 76, 95, 329
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 172, 218, 514
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 5 cut(s) 352, 444, 488, 564, 627
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 4 cut(s) 228, 255, 294, 296
MmeI TCCRAC 2 cut(s) 279, 574
MnlI CCTC 3 cut(s) 27, 176, 401
Mox20I TGGCCA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 561
MseI TTAA 2 cut(s) 321, 630
Msp20I TGGCCA 1 cut(s) 561
MspA1I CMGCKG 2 cut(s) 193, 536
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 216, 261
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 539
NciI CCSGG 1 cut(s) 261
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 4 cut(s) 43, 76, 95, 329
PaqCI CACCTGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 62, 227
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 3 cut(s) 195, 532, 535
PleI GAGTC 4 cut(s) 227, 254, 293, 296
PpsI GAGTC 4 cut(s) 227, 254, 293, 296
Ppu21I YACGTR 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 630
PsiI TTATAA 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 423, 454, 607
RsaNI GTAC 3 cut(s) 422, 453, 606
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 321, 630
SatI GCNGC 3 cut(s) 194, 531, 534
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 4 cut(s) 228, 255, 294, 296
ScrFI CCNGG 2 cut(s) 216, 261
SnaBI TACGTA 1 cut(s) 234
Sse9I AATT 5 cut(s) 352, 444, 488, 564, 627
SsiI CCGC 2 cut(s) 193, 468
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 214, 259
TaiI ACGT 3 cut(s) 8, 236, 477
TaqI TCGA 1 cut(s) 222
TasI AATT 5 cut(s) 352, 444, 488, 564, 627
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 62, 227
Tru1I TTAA 2 cut(s) 321, 630
Tru9I TTAA 2 cut(s) 321, 630
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 4 cut(s) 43, 76, 95, 329
TseI GCWGC 2 cut(s) 530, 533
Tsp45I GTSAC 4 cut(s) 43, 76, 95, 329
TspDTI ATGAA 1 cut(s) 501
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 275
VspI ATTAAT 1 cut(s) 630
XapI RAATTY 2 cut(s) 444, 488
XmiI GTMKAC 2 cut(s) 222, 249
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.