AT5G16980

NADP-dependent alkenal double bond reductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5578846 .. 5581311
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16980.2

Sequence Viewer

Length: 720 bp
ATGGGAGGAGTACAGTGTTATCACTTGACTCACGAGCATTTCAAGATCCAACATACTGATGTTCCATTGTCTTACTACACTGGACTTCTCGGTATGCCTGGTATGACCGCATATGTTGGGTTTTATGAGATCTGTTCTCCAAAGAAAGGAGAGACAGTTTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATGGGCTGTTATGTTGTTGGAAGTGCTGGTAGCAAAGAAAAGGTTGATCTCCTGAAGACCAAGTTTGGGTTTGATTATGCATTTAACTACAAGGAAGAACCTGACCTTAGTGCTGCGCTCAAAAGGTGTTTCCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCTAGATGCAGTGCTTATGAACATGAACATGCACGGGCGTATCGCTGTCTGTGGAATGATCTCACAGTACAATCTTGAGAACCAAGAAGGTGTACACAACCTATCCAACATAATCTACAAACGAATCCGCATTCAAGGCTTTGTAGTGTCTGATTTCTACGACGAATACTCAAAGTTCTTGGAGTTTCTGCATCCGCACATTAAAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATGGGCTCGAGAAAGGTCCTGAAGCTCTCGTGGGACTCTTCCATGGTAAGAATGTTGGGAAACAAGTTGTTGTTATTGCTCGTGAATGA

Protein Analysis

239

Amino Acids

26.58

Weight (kDa)

6.31

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 127 - 260 1e-26 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 161 - 300 1.4e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 108, 520, 587
AclWI GGATC 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 290, 672
AfaI GTAC 4 cut(s) 12, 461, 486, 614
AfiI CCNNNNNNNGG 2 cut(s) 146, 282
AgsI TTSAA 2 cut(s) 43, 527
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 4 cut(s) 170, 193, 629, 656
AluI AGCT 4 cut(s) 170, 193, 629, 656
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 638
ApeKI GCWGC 2 cut(s) 170, 329
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 647
BaeI ACNNNNGTAYC 2 cut(s) 415, 448
BanII GRGCYC 1 cut(s) 639
BarI GAAGNNNNNNTAC 2 cut(s) 596, 628
BauI CACGAG 3 cut(s) 32, 659, 711
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 157, 316
BccI CCATC 2 cut(s) 211, 626
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 129
BisI GCNGC 2 cut(s) 171, 330
BlsI GCNGC 2 cut(s) 172, 331
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 647
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 647
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 3 cut(s) 182, 388, 592
BpiI GAAGAC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 616
BsaJI CCNNGG 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 282
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 673
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 2 cut(s) 146, 282
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 157, 316
BsiHKCI CYCGRG 1 cut(s) 638
BsiWI CGTACG 1 cut(s) 612
BslFI GGGAC 2 cut(s) 213, 678
BslI CCNNNNNNNGG 2 cut(s) 146, 282
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 213, 678
BsmI GAATGC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 638
Bsp1286I GDGCHC 1 cut(s) 639
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 45, 129, 262, 450
Bsp19I CCATGG 1 cut(s) 673
BspACI CCGC 3 cut(s) 108, 520, 587
BspPI GGATC 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 4 cut(s) 45, 129, 262, 450
BssSI CACGAG 3 cut(s) 32, 659, 711
BssT1I CCWWGG 1 cut(s) 673
Bst2BI CACGAG 3 cut(s) 32, 659, 711
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 15, 157, 459
Bst6I CTCTTC 1 cut(s) 674
BstAPI GCANNNNNTGC 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 484
BstBAI YACGTR 1 cut(s) 616
BstDEI CTNAG 2 cut(s) 210, 323
BstDSI CCRYGG 1 cut(s) 673
BstF5I GGATG 1 cut(s) 583
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 4 cut(s) 48, 132, 265, 453
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 45, 129, 262, 450
BstMWI GCNNNNNNNGC 2 cut(s) 179, 528
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 157, 316
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 45, 129
BstYI RGATCY 2 cut(s) 45, 129
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 1 cut(s) 583
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 20, 78, 408
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 647
Csp6I GTAC 4 cut(s) 11, 460, 485, 613
CviAII CATG 3 cut(s) 415, 421, 674
CviJI RGCY 7 cut(s) 170, 193, 222, 531, 629, 637, 656
CviKI_1 RGCY 7 cut(s) 170, 193, 222, 531, 629, 637, 656
CviQI GTAC 4 cut(s) 11, 460, 485, 613
DdeI CTNAG 2 cut(s) 210, 323
DpnI GATC 4 cut(s) 47, 131, 264, 452
DpnII GATC 4 cut(s) 45, 129, 262, 450
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 639
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 2 cut(s) 290, 672
Eco88I CYCGRG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 673
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 3 cut(s) 418, 424, 677
FaqI GGGAC 2 cut(s) 213, 678
FatI CATG 3 cut(s) 414, 420, 673
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 171, 330
FokI GGATG 1 cut(s) 570
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 2 cut(s) 171, 330
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 171, 330
HhaI GCGC 1 cut(s) 334
Hin1II CATG 3 cut(s) 418, 424, 677
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 3 cut(s) 28, 516, 666
Hpy166II GTNNAC 2 cut(s) 485, 487
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 7 cut(s) 32, 43, 268, 467, 640, 650, 713
Hpy8I GTNNAC 2 cut(s) 485, 487
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 2 cut(s) 473, 593
HpyCH4III ACNGT 3 cut(s) 15, 157, 459
HpyCH4IV ACGT 2 cut(s) 611, 615
HpyCH4V TGCA 5 cut(s) 173, 296, 401, 424, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 528
HpyF3I CTNAG 2 cut(s) 210, 323
HpySE526I ACGT 2 cut(s) 611, 615
Hsp92II CATG 3 cut(s) 418, 424, 677
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 4 cut(s) 45, 129, 262, 450
LpnPI CCDG 8 cut(s) 66, 84, 111, 162, 228, 281, 330, 663
Lsp1109I GCAGC 2 cut(s) 157, 316
LweI GCATC 3 cut(s) 182, 388, 592
MaeI CTAG 1 cut(s) 395
MaeII ACGT 2 cut(s) 611, 615
MalI GATC 4 cut(s) 47, 131, 264, 452
MboI GATC 4 cut(s) 45, 129, 262, 450
MboII GAAGA 5 cut(s) 283, 323, 616, 632, 661
MflI RGATCY 2 cut(s) 45, 129
MhlI GDGCHC 1 cut(s) 639
MluCI AATT 1 cut(s) 203
MlyI GAGTC 2 cut(s) 22, 660
MmeI TCCRAC 3 cut(s) 73, 214, 522
MnlI CCTC 1 cut(s) 377
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 2 cut(s) 300, 594
MslI CAYNNNNRTG 2 cut(s) 57, 419
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 179, 528
NcoI CCATGG 1 cut(s) 673
NdeI CATATG 1 cut(s) 112
NdeII GATC 4 cut(s) 45, 129, 262, 450
NlaIII CATG 3 cut(s) 418, 424, 677
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 638
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 516
Pfl23II CGTACG 1 cut(s) 612
PkrI GCNGC 2 cut(s) 172, 331
PleI GAGTC 2 cut(s) 22, 660
PpsI GAGTC 2 cut(s) 22, 660
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspLI CGTACG 1 cut(s) 612
PspPI GGNCC 1 cut(s) 647
PspPPI RGGWCCY 1 cut(s) 647
PsuI RGATCY 2 cut(s) 45, 129
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 4 cut(s) 12, 461, 486, 614
RsaNI GTAC 4 cut(s) 11, 460, 485, 613
RseI CAYNNNNRTG 2 cut(s) 57, 419
SaqAI TTAA 2 cut(s) 300, 594
SatI GCNGC 2 cut(s) 171, 330
Sau3AI GATC 4 cut(s) 45, 129, 262, 450
Sau96I GGNCC 1 cut(s) 647
SchI GAGTC 2 cut(s) 22, 660
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 639
SfaNI GCATC 3 cut(s) 182, 388, 592
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 1 cut(s) 647
SlaI CTCGAG 1 cut(s) 638
SmiMI CAYNNNNRTG 2 cut(s) 57, 419
SmlI CTYRAG 2 cut(s) 467, 638
SmoI CTYRAG 2 cut(s) 467, 638
Sse9I AATT 1 cut(s) 203
SsiI CCGC 3 cut(s) 108, 520, 587
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 3 cut(s) 15, 157, 459
TaiI ACGT 2 cut(s) 614, 618
TaqI TCGA 1 cut(s) 639
TasI AATT 1 cut(s) 203
TatI WGTACW 3 cut(s) 10, 459, 484
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 2 cut(s) 300, 594
Tru9I TTAA 2 cut(s) 300, 594
TscAI CASTG 3 cut(s) 20, 85, 408
TseI GCWGC 2 cut(s) 170, 329
TspDTI ATGAA 2 cut(s) 425, 431
TspRI CASTG 3 cut(s) 20, 85, 408
VpaK11BI GGWCC 1 cut(s) 647
XceI RCATGY 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 638
XspI CTAG 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.