Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000431

Physical Location & Seq

Genomic Coordinates Reverse (-)

5581524 .. 5584466

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACGACGAACAAGCAGGTCATATTCAAAGACCACGTGAGTGGTTTCCCTAAGGAATCCGATTTCAATTTCACCACCACCACCGTCGAACTTAGGGTTCCGGAAGGTTCTAAATCGGTTCTTGTGAAGAATCTCTACCTGTCATGCGATCCTTATATGCGGTCTCGCATGGGGAAACCTGATCCCTCCTCTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAATCTATGGGTATGGAGTGTCTAGAGTGATAGAATCTGGGCATCCAGATTACAAGAAAGGTGATTTACTCTGGGGAATAGTTGGATGGGAGGAGTATAGTGTTATTACACCAATGGCTCACATGCATTTCAAGATCCAACATACAGATGTTCCATTATCCTACTATACTGGACTTCTCGGTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGAAAGGAGAGACAGTTTATGTGTCAGCTGCATCTGGTGCGGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAAAAGGTTGATCTCCTGAAGACCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTAGTGCTGCCCTCAAAAGGTGTTTTCCCAAGGGCATCGACATGTACTTTGAGAACGTAGGAGGCAAAATGCTAGATGCAGTGCTCTTAAACATGAACCCACACGGGCGTATCGCTGTCTGTGGAATGATCTCACAGTACAATCTTGAAAATCAAGAAGGTGTACACAACCTATCCAATATCATCTACAAACGAATACGCATTCAAGGCTTTGTAGTGGCTGATTTCTACGACAAATACCCAAAGTTCTTGGAGTTGGTGCTTCCGCGCATTAAAGAAGGGAAGATAACGTATGTGGAAGATGTAGCTGATGGGCTCGAGAAAGCTCCTGAAGCTCTTGTGGGGCTTTTCCATGGTAAGAACGTTGGGAAACAAGTTGTTGTTATTGCTCGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0032440 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

343

Amino Acids

37.99

Weight (kDa)

8.09

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	5 - 112	8.1e-24	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	165 - 298	1.3e-26	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	199 - 338	1.3e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca	FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica	MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica	Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis	pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis	RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata	RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora	Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa	Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha	Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana	Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccII	CGCG	1 cut(s)	901
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	3 cut(s)	160, 494, 899
AclI	AACGTT	1 cut(s)	996
AclWI	GGATC	3 cut(s)	143, 176, 352
AcuI	CTGAAG	2 cut(s)	602, 984
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	680, 773, 798
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	5 cut(s)	230, 429, 458, 594, 651
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	5 cut(s)	28, 67, 355, 782, 839
AjnI	CCWGG	1 cut(s)	409
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	6 cut(s)	206, 482, 505, 941, 959, 968
AluI	AGCT	6 cut(s)	206, 482, 505, 941, 959, 968
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	2 cut(s)	168, 458
AlwI	GGATC	3 cut(s)	143, 176, 352
Ama87I	CYCGRG	1 cut(s)	950
Aor13HI	TCCGGA	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	482, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AspLEI	GCGC	2 cut(s)	554, 903
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	64, 296
AvaI	CYCGRG	1 cut(s)	950
AxyI	CCTNAGG	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	727, 760
BanII	GRGCYC	1 cut(s)	951
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BauI	CACGAG	1 cut(s)	1023
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	2 cut(s)	469, 628
BccI	CCATC	3 cut(s)	303, 523, 938
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	168, 458
BfaI	CTAG	2 cut(s)	246, 707
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	483, 642
BlsI	GCNGC	2 cut(s)	484, 643
Bme1390I	CCNGG	2 cut(s)	216, 411
BmeT110I	CYCGRG	1 cut(s)	950
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	216, 411
BmsI	GCATC	5 cut(s)	274, 494, 595, 678, 700
BpiI	GAAGAC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	663, 985
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	5 cut(s)	230, 429, 458, 594, 651
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	663, 985
BseGI	GGATG	2 cut(s)	265, 314
BseLI	CCNNNNNNNGG	5 cut(s)	230, 429, 458, 594, 651
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	178, 329
BseXI	GCAGC	2 cut(s)	469, 628
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	901
BsiHKAI	GWGCWC	1 cut(s)	720
BsiHKCI	CYCGRG	1 cut(s)	950
BsiSI	CCGG	2 cut(s)	101, 216
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	5 cut(s)	230, 429, 458, 594, 651
BsmAI	GTCTC	2 cut(s)	168, 458
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	834
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	950
Bsp1286I	GDGCHC	2 cut(s)	720, 951
Bsp13I	TCCGGA	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	5 cut(s)	148, 181, 357, 574, 762
Bsp19I	CCATGG	1 cut(s)	985
BspACI	CCGC	3 cut(s)	160, 494, 899
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	901
BspLI	GGNNCC	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	3 cut(s)	143, 176, 352
BspTNI	GGTCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	663, 985
BssMI	GATC	5 cut(s)	148, 181, 357, 574, 762
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	2 cut(s)	663, 985
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	3 cut(s)	85, 469, 771
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	51, 92, 522, 635
BstDSI	CCRYGG	1 cut(s)	985
BstF5I	GGATG	2 cut(s)	265, 314
BstFNI	CGCG	1 cut(s)	901
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	554, 903
BstKTI	GATC	5 cut(s)	151, 184, 360, 577, 765
BstMAI	GTCTC	2 cut(s)	168, 458
BstMBI	GATC	5 cut(s)	148, 181, 357, 574, 762
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 840, 965
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	2 cut(s)	349, 679
BstSCI	CCNGG	2 cut(s)	214, 409
BstUI	CGCG	1 cut(s)	901
BstV1I	GCAGC	2 cut(s)	469, 628
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	985
BtsCI	GGATG	2 cut(s)	265, 314
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	2 cut(s)	554, 903
Csp6I	GTAC	3 cut(s)	679, 772, 797
CviAII	CATG	6 cut(s)	144, 169, 346, 676, 727, 986
CviQI	GTAC	3 cut(s)	679, 772, 797
DdeI	CTNAG	4 cut(s)	51, 92, 522, 635
DpnI	GATC	5 cut(s)	150, 183, 359, 576, 764
DpnII	GATC	5 cut(s)	148, 181, 357, 574, 762
Eco130I	CCWWGG	2 cut(s)	663, 985
Eco24I	GRGCYC	1 cut(s)	951
Eco31I	GGTCTC	1 cut(s)	168
Eco47III	AGCGCT	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	602, 984
Eco72I	CACGTG	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	950
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	663, 985
EcoT22I	ATGCAT	2 cut(s)	351, 610
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	2 cut(s)	663, 985
FaeI	CATG	6 cut(s)	147, 172, 349, 679, 730, 989
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	6 cut(s)	143, 168, 345, 675, 726, 985
Fnu4HI	GCNGC	2 cut(s)	483, 642
FokI	GGATG	2 cut(s)	252, 321
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	2 cut(s)	483, 642
FspBI	CTAG	2 cut(s)	246, 707
GlaI	GCGC	2 cut(s)	553, 902
GluI	GCNGC	2 cut(s)	483, 642
GsaI	CCCAGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	555
HapII	CCGG	2 cut(s)	101, 216
HhaI	GCGC	2 cut(s)	554, 903
Hin1II	CATG	6 cut(s)	147, 172, 349, 679, 730, 989
Hin6I	GCGC	2 cut(s)	552, 901
HinP1I	GCGC	2 cut(s)	552, 901
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	4 cut(s)	56, 130, 257, 626
HpaII	CCGG	2 cut(s)	101, 216
HphI	GGTGA	2 cut(s)	64, 296
Hpy166II	GTNNAC	2 cut(s)	797, 799
Hpy188I	TCNGA	2 cut(s)	61, 631
Hpy8I	GTNNAC	2 cut(s)	797, 799
Hpy99I	CGWCG	2 cut(s)	10, 89
HpyAV	CCTTC	3 cut(s)	98, 785, 905
HpyCH4III	ACNGT	3 cut(s)	85, 469, 771
HpyCH4IV	ACGT	4 cut(s)	36, 690, 923, 996
HpyCH4V	TGCA	4 cut(s)	349, 485, 608, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 840, 965
HpyF3I	CTNAG	4 cut(s)	51, 92, 522, 635
HpySE526I	ACGT	4 cut(s)	36, 690, 923, 996
Hsp92II	CATG	6 cut(s)	147, 172, 349, 679, 730, 989
HspAI	GCGC	2 cut(s)	552, 901
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	148, 181, 357, 574, 762
LmnI	GCTCC	2 cut(s)	217, 964
Lsp1109I	GCAGC	2 cut(s)	469, 628
LweI	GCATC	5 cut(s)	274, 494, 595, 678, 700
MaeI	CTAG	2 cut(s)	246, 707
MaeII	ACGT	4 cut(s)	36, 690, 923, 996
MalI	GATC	5 cut(s)	150, 183, 359, 576, 764
MboI	GATC	5 cut(s)	148, 181, 357, 574, 762
MboII	GAAGA	5 cut(s)	139, 595, 635, 928, 944
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	720, 951
MluCI	AATT	2 cut(s)	67, 515
MmeI	TCCRAC	3 cut(s)	286, 385, 526
MnlI	CCTC	5 cut(s)	196, 199, 307, 656, 689
Mph1103I	ATGCAT	2 cut(s)	351, 610
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	3 cut(s)	612, 722, 906
MslI	CAYNNNNRTG	3 cut(s)	39, 369, 674
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	2 cut(s)	101, 216
MspR9I	CCNGG	2 cut(s)	216, 411
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	901
MwoI	GCNNNNNNNGC	3 cut(s)	491, 840, 965
NciI	CCSGG	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	985
NdeII	GATC	5 cut(s)	148, 181, 357, 574, 762
NlaIII	CATG	6 cut(s)	147, 172, 349, 679, 730, 989
NlaIV	GGNNCC	1 cut(s)	99
NsiI	ATGCAT	2 cut(s)	351, 610
NspI	RCATGY	2 cut(s)	349, 679
OliI	CACNNNNGTG	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	950
PciI	ACATGT	1 cut(s)	675
PctI	GAATGC	1 cut(s)	834
PfeI	GAWTC	4 cut(s)	56, 130, 257, 626
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	484, 643
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	37
PscI	ACATGT	1 cut(s)	675
Psp1406I	AACGTT	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	409
PspCI	CACGTG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	680, 773, 798
RsaNI	GTAC	3 cut(s)	679, 772, 797
RseI	CAYNNNNRTG	3 cut(s)	39, 369, 674
SaqAI	TTAA	3 cut(s)	612, 722, 906
SatI	GCNGC	2 cut(s)	483, 642
Sau3AI	GATC	5 cut(s)	148, 181, 357, 574, 762
ScrFI	CCNGG	2 cut(s)	216, 411
SduI	GDGCHC	2 cut(s)	720, 951
SfaNI	GCATC	5 cut(s)	274, 494, 595, 678, 700
Sfr274I	CTCGAG	1 cut(s)	950
SlaI	CTCGAG	1 cut(s)	950
SmiMI	CAYNNNNRTG	3 cut(s)	39, 369, 674
SmlI	CTYRAG	2 cut(s)	201, 950
SmoI	CTYRAG	2 cut(s)	201, 950
Sse9I	AATT	2 cut(s)	67, 515
SsiI	CCGC	3 cut(s)	160, 494, 899
SspMI	CTAG	2 cut(s)	246, 707
StyD4I	CCNGG	2 cut(s)	214, 409
StyI	CCWWGG	2 cut(s)	663, 985
TaaI	ACNGT	3 cut(s)	85, 469, 771
TaiI	ACGT	4 cut(s)	39, 693, 926, 999
TaqI	TCGA	3 cut(s)	87, 672, 951
TasI	AATT	2 cut(s)	67, 515
TatI	WGTACW	3 cut(s)	678, 771, 796
TfiI	GAWTC	4 cut(s)	56, 130, 257, 626
Tru1I	TTAA	3 cut(s)	612, 722, 906
Tru9I	TTAA	3 cut(s)	612, 722, 906
TscAI	CASTG	1 cut(s)	720
TseI	GCWGC	2 cut(s)	482, 641
TspDTI	ATGAA	2 cut(s)	453, 743
TspRI	CASTG	1 cut(s)	720
Van91I	CCANNNNNTGG	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	2 cut(s)	349, 679
XhoI	CTCGAG	1 cut(s)	950
XspI	CTAG	2 cut(s)	246, 707
Zsp2I	ATGCAT	2 cut(s)	351, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.