RchiOBHm_Chr2g0084711

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000431
Physical Location & Seq
Forward (+)
418801 .. 420540
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46028

Sequence Viewer

Length: 1065 bp
ATGGCAGGTGAAGTAGCAGTGAGGAATAAGCAGGTAATACTGAGGGACTATGTGTCTGGTTTTCCCAAAGAGTCAGACATGTATGTCACAACTGATAGCACAGTAAGTCTGAAGGTTCCAGCAGAGACGAGAAATGCTGTTCTACTCAAGAACCTCTACTTGTCCTGCGATCCCGTGATGCAATTCCTCATTAGGAACTCTCAGCAGAAAATGAGAAAATACGTCTATTGCACTCCTGGCTCTCCAATTCGTGGGTATGGTGTGTCTCAAGTTGTGGACTCGAGTCATCCAGAGTATAAACAAGGTGATTTGGTGTGGGGGTTAACCACATGGGAAGGGTACAGCCTCATCACAGATATCGTCCCTGAAACCTCACTCGTTAAAATACACCACACTGATGTCCCTCTTTCTTACTATACTGGACTTCTTGGCATGGCTGGTAAGACTGCTTATGCTGGATTCTTTGAAGTATGTCCTCCTAAGAAAGGAGACAAGGTGTTGGTCTCTGCAGCATCTGGTGCAGTTGGTCAGCTTCTTGGACAATTCGCTAAGTTGTCTGGCTGTTATGTTGTTGGATCTGCCGGATCTAAAGAAAAGGTTGATCTACTGAAGAACAAATTGGGGTTTGATGAGGCTTTCAATTACAAGGAGGAGAACGATTTAGAAGCAGCTTTGAAAAGGTACTTTCCTGAAGGAATTGACGTCTACTTTGAGCATGTGGGTGGGAAATTGTTTGACGCAGTGCTGCTCAACATGAAAGAACACGGTCGCATTGCTGTGTGCGGAATGATTTCACAATACAACCTTCCCGAGCCTGAGCCACTCAAAAACCTGTTCCAGATTGCATTGAAGCGGCTCAATATACATGGATTTACGCATCGCGATTACGATCACATAGTACCCAAGTACTATGAGTTTGTGCTGCCTTACATCCGGGAAGGTAAAATAGTGTATGTGGAAGACATAGTTGAAGGGCTTGAGAATGGTCCAGCAGCACTGGTTGGACTCTTTACTGGTCGCAACTTTGGGAAGCAAGTAGTTGCAGTTGCACCACCTCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

354

Amino Acids

39.31

Weight (kDa)

6.72

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 10 - 117 2.4e-17 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 174 - 297 2.9e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 207 - 347 1.8e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 705
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 1 cut(s) 705
AccII CGCG 1 cut(s) 882
AciI CCGC 2 cut(s) 783, 853
AclWI GGATC 3 cut(s) 164, 583, 592
AcuI CTGAAG 3 cut(s) 131, 629, 711
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 4 cut(s) 341, 683, 900, 908
AfiI CCNNNNNNNGG 2 cut(s) 251, 485
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 5 cut(s) 467, 640, 676, 850, 971
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AluBI AGCT 2 cut(s) 532, 671
AluI AGCT 2 cut(s) 532, 671
Alw26I GTCTC 4 cut(s) 119, 270, 483, 508
AlwI GGATC 3 cut(s) 164, 583, 592
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 2 cut(s) 280, 809
ApeKI GCWGC 5 cut(s) 509, 668, 745, 922, 992
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
Asp700I GAANNNNTTC 1 cut(s) 790
AspS9I GGNCC 1 cut(s) 986
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 2 cut(s) 20, 317
AvaI CYCGRG 2 cut(s) 280, 809
AvaII GGWCC 1 cut(s) 986
BbsI GAAGAC 1 cut(s) 966
BbvI GCAGC 5 cut(s) 521, 680, 732, 909, 1004
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 4 cut(s) 119, 270, 483, 508
BfmI CTRYAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 6 cut(s) 510, 669, 746, 854, 923, 993
BlsI GCNGC 6 cut(s) 511, 670, 747, 855, 924, 994
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 2 cut(s) 237, 935
Bme18I GGWCC 1 cut(s) 986
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 2 cut(s) 280, 809
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 237, 935
BmsI GCATC 3 cut(s) 168, 521, 886
BoxI GACNNNNGTC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 3 cut(s) 131, 252, 998
BpuMI CCSGG 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 888
BsaHI GRCGYC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 485
Bse1I ACTGG 3 cut(s) 424, 1002, 1018
Bse3DI GCAATG 1 cut(s) 771
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 286, 930
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 2 cut(s) 251, 485
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 32, 215, 807
BseNI ACTGG 3 cut(s) 424, 1002, 1018
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 5 cut(s) 521, 680, 732, 909, 1004
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 882
Bsh1285I CGRYCG 1 cut(s) 769
BsiEI CGRYCG 1 cut(s) 769
BsiHKCI CYCGRG 2 cut(s) 280, 809
BsiSI CCGG 2 cut(s) 582, 934
BslFI GGGAC 3 cut(s) 59, 347, 386
BslI CCNNNNNNNGG 2 cut(s) 251, 485
BsmAI GTCTC 4 cut(s) 119, 270, 483, 508
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 3 cut(s) 59, 347, 386
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 2 cut(s) 280, 809
Bsp143I GATC 5 cut(s) 169, 575, 584, 601, 889
Bsp68I TCGCGA 1 cut(s) 882
BspACI CCGC 2 cut(s) 783, 853
BspCNI CTCAG 3 cut(s) 33, 214, 808
BspFNI CGCG 1 cut(s) 882
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 3 cut(s) 164, 583, 592
BspTNI GGTCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 3 cut(s) 424, 1002, 1018
BssMI GATC 5 cut(s) 169, 575, 584, 601, 889
BssNI GRCGYC 1 cut(s) 702
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 103, 767
BstACI GRCGYC 1 cut(s) 702
BstAPI GCANNNNNTGC 1 cut(s) 518
BstDEI CTNAG 5 cut(s) 41, 201, 480, 549, 816
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 286, 930
BstFNI CGCG 1 cut(s) 882
BstKTI GATC 5 cut(s) 172, 578, 587, 604, 892
BstMAI GTCTC 4 cut(s) 119, 270, 483, 508
BstMBI GATC 5 cut(s) 169, 575, 584, 601, 889
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 2 cut(s) 237, 518
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 2 cut(s) 82, 719
BstPAI GACNNNNGTC 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 235, 933
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 5 cut(s) 521, 680, 732, 909, 1004
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 2 cut(s) 575, 584
BstYI RGATCY 2 cut(s) 575, 584
BtgZI GCGATG 1 cut(s) 863
BtsCI GGATG 2 cut(s) 286, 930
BtsI GCAGTG 2 cut(s) 24, 747
BtsIMutI CAGTG 4 cut(s) 24, 393, 747, 995
BtuMI TCGCGA 1 cut(s) 882
BveI ACCTGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 986
CseI GACGC 1 cut(s) 746
Csp6I GTAC 4 cut(s) 340, 682, 899, 907
CviAII CATG 6 cut(s) 79, 330, 433, 716, 754, 866
CviQI GTAC 4 cut(s) 340, 682, 899, 907
DdeI CTNAG 5 cut(s) 41, 201, 480, 549, 816
DpnI GATC 5 cut(s) 171, 577, 586, 603, 891
DpnII GATC 5 cut(s) 169, 575, 584, 601, 889
DrdI GACNNNNNNGTC 1 cut(s) 83
DriI GACNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 508
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 986
Eco57I CTGAAG 3 cut(s) 131, 629, 711
Eco88I CYCGRG 2 cut(s) 280, 809
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 6 cut(s) 82, 333, 436, 719, 757, 869
FaqI GGGAC 3 cut(s) 59, 347, 386
FatI CATG 6 cut(s) 78, 329, 432, 715, 753, 865
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 6 cut(s) 510, 669, 746, 854, 923, 993
FokI GGATG 2 cut(s) 273, 917
Fsp4HI GCNGC 6 cut(s) 510, 669, 746, 854, 923, 993
GluI GCNGC 6 cut(s) 510, 669, 746, 854, 923, 993
HapII CCGG 2 cut(s) 582, 934
HgaI GACGC 1 cut(s) 746
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 6 cut(s) 82, 333, 436, 719, 757, 869
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 5 cut(s) 71, 278, 283, 459, 1005
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 2 cut(s) 582, 934
HphI GGTGA 2 cut(s) 20, 317
Hpy166II GTNNAC 3 cut(s) 277, 324, 706
Hpy188I TCNGA 2 cut(s) 76, 111
Hpy188III TCNNGA 6 cut(s) 148, 290, 689, 809, 838, 881
Hpy8I GTNNAC 3 cut(s) 277, 324, 706
HpyAV CCTTC 6 cut(s) 106, 329, 686, 815, 932, 965
HpyCH4III ACNGT 2 cut(s) 103, 767
HpyCH4IV ACGT 2 cut(s) 222, 702
HpyCH4V TGCA 7 cut(s) 181, 231, 509, 521, 845, 1043, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 518
HpyF3I CTNAG 5 cut(s) 41, 201, 480, 549, 816
HpySE526I ACGT 2 cut(s) 222, 702
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 6 cut(s) 82, 333, 436, 719, 757, 869
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 5 cut(s) 169, 575, 584, 601, 889
Lsp1109I GCAGC 5 cut(s) 521, 680, 732, 909, 1004
LweI GCATC 3 cut(s) 168, 521, 886
MaeII ACGT 2 cut(s) 222, 702
MaeIII GTNAC 1 cut(s) 85
MalI GATC 5 cut(s) 171, 577, 586, 603, 891
MboI GATC 5 cut(s) 169, 575, 584, 601, 889
MboII GAAGA 2 cut(s) 622, 971
MflI RGATCY 2 cut(s) 575, 584
MluCI AATT 7 cut(s) 182, 246, 542, 617, 640, 696, 728
MlyI GAGTC 4 cut(s) 80, 272, 292, 999
MmeI TCCRAC 2 cut(s) 553, 982
MroXI GAANNNNTTC 1 cut(s) 790
MseI TTAA 3 cut(s) 323, 381, 1063
MslI CAYNNNNRTG 3 cut(s) 396, 720, 776
MspI CCGG 2 cut(s) 582, 934
MspR9I CCNGG 2 cut(s) 237, 935
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 882
MwoI GCNNNNNNNGC 2 cut(s) 237, 518
NciI CCSGG 1 cut(s) 935
NdeII GATC 5 cut(s) 169, 575, 584, 601, 889
NlaIII CATG 6 cut(s) 82, 333, 436, 719, 757, 869
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 85
NruI TCGCGA 1 cut(s) 882
NspI RCATGY 2 cut(s) 82, 719
PaeR7I CTCGAG 1 cut(s) 280
PciI ACATGT 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 1 cut(s) 459
PflMI CCANNNNNTGG 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 6 cut(s) 511, 670, 747, 855, 924, 994
PleI GAGTC 4 cut(s) 79, 272, 291, 999
PpsI GAGTC 4 cut(s) 79, 272, 291, 999
PscI ACATGT 1 cut(s) 78
PshAI GACNNNNGTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 986
PspXI VCTCGAGB 1 cut(s) 280
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 2 cut(s) 575, 584
RruI TCGCGA 1 cut(s) 882
RsaI GTAC 4 cut(s) 341, 683, 900, 908
RsaNI GTAC 4 cut(s) 340, 682, 899, 907
RseI CAYNNNNRTG 3 cut(s) 396, 720, 776
SaqAI TTAA 3 cut(s) 323, 381, 1063
SatI GCNGC 6 cut(s) 510, 669, 746, 854, 923, 993
Sau3AI GATC 5 cut(s) 169, 575, 584, 601, 889
Sau96I GGNCC 1 cut(s) 986
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 4 cut(s) 80, 272, 292, 999
ScrFI CCNGG 2 cut(s) 237, 935
SfaNI GCATC 3 cut(s) 168, 521, 886
SfcI CTRYAG 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 986
SlaI CTCGAG 1 cut(s) 280
SmiMI CAYNNNNRTG 3 cut(s) 396, 720, 776
SmlI CTYRAG 4 cut(s) 146, 267, 280, 977
SmoI CTYRAG 4 cut(s) 146, 267, 280, 977
Sse9I AATT 7 cut(s) 182, 246, 542, 617, 640, 696, 728
SsiI CCGC 2 cut(s) 783, 853
StyD4I CCNGG 2 cut(s) 235, 933
TaaI ACNGT 2 cut(s) 103, 767
TaiI ACGT 2 cut(s) 225, 705
TaqI TCGA 1 cut(s) 281
TasI AATT 7 cut(s) 182, 246, 542, 617, 640, 696, 728
TatI WGTACW 1 cut(s) 906
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 3 cut(s) 323, 381, 1063
Tru9I TTAA 3 cut(s) 323, 381, 1063
TscAI CASTG 4 cut(s) 24, 400, 747, 1002
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 5 cut(s) 509, 668, 745, 922, 992
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 770
TspRI CASTG 4 cut(s) 24, 400, 747, 1002
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 986
XagI CCTNNNNNAGG 1 cut(s) 483
XceI RCATGY 2 cut(s) 82, 719
XhoI CTCGAG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 790
ZraI GACGTC 1 cut(s) 703
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.