pycom02g13040

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000431
Physical Location & Seq
Reverse (-)
9619182 .. 9625214
6033 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13040.1

Sequence Viewer

Length: 318 bp
ATGCCGGGAGTTGCAGCTTACGTTGGATTTCACAAAATATGTTATCCAAAGGAACGCGATTGTGTCTATGTTTCTTCTGCAGCAGGAGGAGTTGGTCAACTTGTTGGACAATTTGCGAAAATGATCGGCTGCTATGTGGTTGGAAGTGCAAGCACTAAAGAGAAAGTTGATCTCTTAAAGCAAAAGATGGGATTTGATGAAGCGTTCAACTATAAGGAGGAAAATTTAGGTTCAGCATTAAGGAAGTACTTCCCCGAAGGCATTGACATTTACTTCGACAATGTTGGTGGTCGCTTGATGAAGTTATTTTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

106

Amino Acids

11.62

Weight (kDa)

8.67

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 30 - 100 3.9e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
ApeKI GCWGC 3 cut(s) 14, 80, 129
ApoI RAATTY 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 6
BbvI GCAGC 3 cut(s) 26, 92, 116
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 3 cut(s) 15, 81, 130
BlsI GCNGC 3 cut(s) 16, 82, 131
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 26, 92, 116
Bsh1236I CGCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 5
Bsp143I GATC 2 cut(s) 123, 169
BspFNI CGCG 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 82
BssMI GATC 2 cut(s) 123, 169
BstC8I GCNNGC 1 cut(s) 151
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 2 cut(s) 126, 172
BstMBI GATC 2 cut(s) 123, 169
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 26, 92, 116
Cac8I GCNNGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviJI RGCY 2 cut(s) 17, 129
CviKI_1 RGCY 2 cut(s) 17, 129
CviQI GTAC 1 cut(s) 247
DpnI GATC 2 cut(s) 125, 171
DpnII GATC 2 cut(s) 123, 169
FaiI YATR 4 cut(s) 40, 69, 135, 213
Fnu4HI GCNGC 3 cut(s) 15, 81, 130
Fsp4HI GCNGC 3 cut(s) 15, 81, 130
GluI GCNGC 3 cut(s) 15, 81, 130
HapII CCGG 1 cut(s) 5
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 14, 80, 149, 312
HpySE526I ACGT 1 cut(s) 21
Kzo9I GATC 2 cut(s) 123, 169
LpnPI CCDG 2 cut(s) 18, 69
Lsp1109I GCAGC 3 cut(s) 26, 92, 116
MaeII ACGT 1 cut(s) 21
MalI GATC 2 cut(s) 125, 171
MboI GATC 2 cut(s) 123, 169
MboII GAAGA 1 cut(s) 66
MluCI AATT 2 cut(s) 110, 223
MmeI TCCRAC 3 cut(s) 4, 85, 121
MnlI CCTC 2 cut(s) 80, 211
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 2 cut(s) 176, 239
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 57
NciI CCSGG 1 cut(s) 6
NdeII GATC 2 cut(s) 123, 169
PdmI GAANNNNTTC 1 cut(s) 248
PkrI GCNGC 3 cut(s) 16, 82, 131
PstI CTGCAG 1 cut(s) 82
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 176, 239
SatI GCNGC 3 cut(s) 15, 81, 130
Sau3AI GATC 2 cut(s) 123, 169
ScaI AGTACT 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 6
SetI ASST 3 cut(s) 19, 24, 232
SfcI CTRYAG 1 cut(s) 78
SgeI CNNG 8 cut(s) 17, 18, 68, 96, 113, 162, 266, 307
Sse9I AATT 2 cut(s) 110, 223
StyD4I CCNGG 1 cut(s) 4
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 276
TasI AATT 2 cut(s) 110, 223
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 2 cut(s) 176, 239
Tru9I TTAA 2 cut(s) 176, 239
TseI GCWGC 3 cut(s) 14, 80, 129
TspDTI ATGAA 2 cut(s) 213, 314
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.