Rh2CG216200

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000431
Physical Location & Seq
Reverse (-)
21266657 .. 21268592
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG216200.1

Sequence Viewer

Length: 759 bp
ATGGCGAGTGGTGAGGGGGAAGTGATGAGGAACAAGCAGGTGATATTCAGGGACTATGTGACTGGCAATCCCAAAGAGTCGGACATGTACGTGACAGACAGTAGTACCATTAAGCTCAAGGCTCCACAGGGCTCAGTCGCGGTGCTGGTCAAGAACCTTTACTTGGCGTGTGACCCTTATTTGAGGATCCGAATGGGGCGAATTGAAGGTTCTAGTGTCTTCACTTCCTTCACCCCTGGCTCTCCATTGAGTGGATTTGGAGTGGCTAAAGTCTTGGATTCCGGGCATCCGGAGTTTAAGGAAGGTGACTTGGTTTGGGGAACAACCGGATGGGAAGAGTACAGTCTCATCACAGAACCAGAACAACTCTTCAAGATCCACCACACTGACGTGCCCCTTTCCTACTATACTGGACTTCTTGGTGTGCCGGGTATGACTGCCTTTGTCGGTTTCCATGAAGTGTGCTCGCCTAAAAGAGGAGATTCTGTGTTCGTTTCTGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTGATGGGGTGCTATGTTGTTGGAAGTGTTGGAAGCAAAGAGAAGGTCGATCTACTAAAGAACAAGCTAGGGTTTGATGAGGCTTTCAATTATAAGGAAGAGCATGACCTTGATGCTGCTTTGAAAAGGACGTCAGTGGATTTCCGCACACCCCAAAGCAACGTAGTTTTGGACATAAACCGAAATATCATAACAACACGCAAAATGAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

252

Amino Acids

27.6

Weight (kDa)

6.23

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 12 - 126 1.2e-21 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 171 - 224 4e-11 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 636, 757
AarI CACCTGC 1 cut(s) 28
AatII GACGTC 1 cut(s) 677
Acc36I ACCTGC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 2 cut(s) 140, 688
AclWI GGATC 3 cut(s) 181, 194, 370
AcsI RAATTY 1 cut(s) 751
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 89, 106, 341
AfiI CCNNNNNNNGG 3 cut(s) 163, 251, 476
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 4 cut(s) 206, 373, 631, 667
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 4 cut(s) 115, 506, 523, 610
AluI AGCT 4 cut(s) 115, 506, 523, 610
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 3 cut(s) 181, 194, 370
AlwNI CAGNNNCTG 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 289
ApeKI GCWGC 3 cut(s) 500, 503, 659
ApoI RAATTY 1 cut(s) 751
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AsuC2I CCSGG 2 cut(s) 283, 429
AsuHPI GGTGA 4 cut(s) 23, 52, 223, 317
BaeGI GKGCMC 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BamHI GGATCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 512, 515, 646
BccI CCATC 2 cut(s) 324, 541
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 2 cut(s) 283, 429
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 213, 611
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 3 cut(s) 501, 504, 660
BlsI GCNGC 3 cut(s) 502, 505, 661
Bme1390I CCNGG 3 cut(s) 237, 283, 429
BmgBI CACGTC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 123, 188
BmrFI CCNGG 3 cut(s) 237, 283, 429
BmsI GCATC 2 cut(s) 295, 646
BpiI GAAGAC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 283, 429
BsaAI YACGTR 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 289, 326
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 251, 476
Bse1I ACTGG 2 cut(s) 67, 415
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 286, 335
BseLI CCNNNNNNNGG 3 cut(s) 163, 251, 476
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 67, 415
BseRI GAGGAG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 396
BseXI GCAGC 3 cut(s) 512, 515, 646
Bsh1236I CGCG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 4 cut(s) 282, 290, 327, 428
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 163, 251, 476
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 134, 396, 467
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 186, 375, 592
BspACI CCGC 2 cut(s) 140, 688
BspCNI CTCAG 1 cut(s) 146
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 123, 188
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 3 cut(s) 181, 194, 370
BspQI GCTCTTC 1 cut(s) 636
BsrI ACTGG 2 cut(s) 67, 415
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 186, 375, 592
BssNI GRCGYC 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 101, 344
Bst6I CTCTTC 3 cut(s) 330, 374, 636
BstACI GRCGYC 1 cut(s) 674
BstAPI GCANNNNNTGC 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 286, 335
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 3 cut(s) 189, 378, 595
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 3 cut(s) 186, 375, 592
BstMWI GCNNNNNNNGC 2 cut(s) 509, 529
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 235, 281, 427
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 396
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 512, 515, 646
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 2 cut(s) 186, 375
BstYI RGATCY 2 cut(s) 186, 375
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 286, 335
BtsIMutI CAGTG 2 cut(s) 384, 684
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 506
Csp6I GTAC 3 cut(s) 88, 105, 340
CviAII CATG 3 cut(s) 85, 455, 647
CviJI RGCY 9 cut(s) 115, 122, 132, 240, 266, 506, 523, 610, 626
CviKI_1 RGCY 9 cut(s) 115, 122, 132, 240, 266, 506, 523, 610, 626
CviQI GTAC 3 cut(s) 88, 105, 340
DdeI CTNAG 1 cut(s) 133
DpnI GATC 3 cut(s) 188, 377, 594
DpnII GATC 3 cut(s) 186, 375, 592
Eam1104I CTCTTC 3 cut(s) 330, 374, 636
EarI CTCTTC 3 cut(s) 330, 374, 636
Eco24I GRGCYC 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 3 cut(s) 88, 458, 650
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 84, 454, 646
Fnu4HI GCNGC 3 cut(s) 501, 504, 660
FokI GGATG 2 cut(s) 273, 342
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 501, 504, 660
FspBI CTAG 2 cut(s) 213, 611
GluI GCNGC 3 cut(s) 501, 504, 660
HapII CCGG 4 cut(s) 282, 290, 327, 428
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 3 cut(s) 88, 458, 650
HinfI GANTC 3 cut(s) 77, 278, 482
HpaII CCGG 4 cut(s) 282, 290, 327, 428
HphI GGTGA 4 cut(s) 23, 52, 223, 317
Hpy188I TCNGA 2 cut(s) 82, 191
Hpy188III TCNNGA 3 cut(s) 151, 290, 373
HpyAV CCTTC 4 cut(s) 200, 238, 296, 580
HpyCH4III ACNGT 2 cut(s) 101, 344
HpyCH4IV ACGT 4 cut(s) 90, 390, 674, 705
HpyCH4V TGCA 2 cut(s) 500, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 529
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 4 cut(s) 90, 390, 674, 705
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 3 cut(s) 88, 458, 650
Kpn2I TCCGGA 1 cut(s) 289
Kzo9I GATC 3 cut(s) 186, 375, 592
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 3 cut(s) 512, 515, 646
LweI GCATC 2 cut(s) 295, 646
MaeI CTAG 2 cut(s) 213, 611
MaeII ACGT 4 cut(s) 90, 390, 674, 705
MaeIII GTNAC 4 cut(s) 58, 91, 170, 305
MalI GATC 3 cut(s) 188, 377, 594
MboI GATC 3 cut(s) 186, 375, 592
MboII GAAGA 4 cut(s) 211, 347, 361, 653
MflI RGATCY 2 cut(s) 186, 375
MhlI GDGCHC 3 cut(s) 134, 396, 467
MluCI AATT 4 cut(s) 201, 533, 631, 751
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 3 cut(s) 60, 544, 553
MnlI CCTC 5 cut(s) 7, 21, 177, 470, 616
MroI TCCGGA 1 cut(s) 289
MseI TTAA 2 cut(s) 111, 297
MslI CAYNNNNRTG 2 cut(s) 89, 389
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 4 cut(s) 282, 290, 327, 428
MspR9I CCNGG 3 cut(s) 237, 283, 429
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 509, 529
NciI CCSGG 2 cut(s) 283, 429
NdeII GATC 3 cut(s) 186, 375, 592
NlaIII CATG 3 cut(s) 88, 458, 650
NlaIV GGNNCC 2 cut(s) 123, 188
NmuCI GTSAC 4 cut(s) 58, 91, 170, 305
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 28
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 636
PfeI GAWTC 2 cut(s) 278, 482
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 502, 505, 661
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 91
PscI ACATGT 1 cut(s) 84
PsiI TTATAA 2 cut(s) 636, 757
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 123, 188
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 186, 375
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 3 cut(s) 89, 106, 341
RsaNI GTAC 3 cut(s) 88, 105, 340
RseI CAYNNNNRTG 2 cut(s) 89, 389
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 2 cut(s) 111, 297
SatI GCNGC 3 cut(s) 501, 504, 660
Sau3AI GATC 3 cut(s) 186, 375, 592
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 237, 283, 429
SduI GDGCHC 3 cut(s) 134, 396, 467
SfaNI GCATC 2 cut(s) 295, 646
SfcI CTRYAG 1 cut(s) 498
SmiMI CAYNNNNRTG 2 cut(s) 89, 389
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 4 cut(s) 201, 533, 631, 751
SsiI CCGC 2 cut(s) 140, 688
SspMI CTAG 2 cut(s) 213, 611
StyD4I CCNGG 3 cut(s) 235, 281, 427
TaaI ACNGT 2 cut(s) 101, 344
TaiI ACGT 4 cut(s) 93, 393, 677, 708
TaqI TCGA 1 cut(s) 591
TasI AATT 4 cut(s) 201, 533, 631, 751
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 2 cut(s) 278, 482
Tru1I TTAA 2 cut(s) 111, 297
Tru9I TTAA 2 cut(s) 111, 297
TscAI CASTG 2 cut(s) 391, 684
TseFI GTSAC 4 cut(s) 58, 91, 170, 305
TseI GCWGC 3 cut(s) 500, 503, 659
Tsp45I GTSAC 4 cut(s) 58, 91, 170, 305
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 2 cut(s) 391, 684
Van91I CCANNNNNTGG 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 1 cut(s) 751
XceI RCATGY 1 cut(s) 88
XspI CTAG 2 cut(s) 213, 611
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.