RchiOBHm_Chr6g0275751

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000431
Physical Location & Seq
Reverse (-)
37619509 .. 37620432
924 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24740

Sequence Viewer

Length: 327 bp
ATGGCAACTGTGGCCATTTCAATGTATGCTGGGATGACCGCCTATGCAGGCTTCAATGAAGTTTGTTCTCCTAAGAAAGGAGAATATGTCTTCATTTCAGCAGCATCAGGTGCTGCTGGTCAGCTAGTTGGACAATTAGCAAAATTGTTGGGTTATTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGACCTTTTGAAGAGTAAGTTAAATTTTGATGAAGCTTTCAACTATAAGGAAGAGCATGACTTAACCGCAGTTCCGAAAAGGTCAATCCATAATTTACCAAGGAACCTTAATATTGCTCTGGAACTCAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

108

Amino Acids

11.66

Weight (kDa)

8.67

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 40 - 88 1.5e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 258
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 21, 55, 202, 232
AluBI AGCT 2 cut(s) 124, 227
AluI AGCT 2 cut(s) 124, 227
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 101, 113
ApoI RAATTY 1 cut(s) 214
BalI TGGCCA 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 100, 113
BfaI CTAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 102, 114
BlsI GCNGC 2 cut(s) 103, 115
BmiI GGNNCC 1 cut(s) 296
BmsI GCATC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 100, 113
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 1 cut(s) 14
BspACI CCGC 2 cut(s) 39, 258
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 197, 237
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 72
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 11, 110
BstV1I GCAGC 2 cut(s) 100, 113
BstV2I GAAGAC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 113
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 14, 51, 124, 227
CviKI_1 RGCY 4 cut(s) 14, 51, 124, 227
DdeI CTNAG 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 197, 237
EarI CTCTTC 2 cut(s) 197, 237
Eco130I CCWWGG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 1 cut(s) 251
FaiI YATR 7 cut(s) 27, 45, 87, 159, 237, 249, 282
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 102, 114
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 102, 114
FspBI CTAG 1 cut(s) 125
GluI GCNGC 2 cut(s) 102, 114
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 110
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 251
LguI GCTCTTC 1 cut(s) 237
LpnPI CCDG 6 cut(s) 15, 33, 93, 102, 159, 296
Lsp1109I GCAGC 2 cut(s) 100, 113
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 125
MboII GAAGA 3 cut(s) 82, 214, 254
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 5 cut(s) 134, 143, 214, 283, 320
MluNI TGGCCA 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 109, 145
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MseI TTAA 3 cut(s) 212, 254, 300
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 11, 110
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 103, 115
PspFI CCCAGC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 212, 254, 300
SatI GCNGC 2 cut(s) 102, 114
SetI ASST 7 cut(s) 112, 126, 192, 198, 229, 275, 300
SfaNI GCATC 1 cut(s) 113
SgeI CNNG 9 cut(s) 42, 60, 120, 129, 137, 186, 260, 303, 323
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 5 cut(s) 134, 143, 214, 283, 320
SsiI CCGC 2 cut(s) 39, 258
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 10
TasI AATT 5 cut(s) 134, 143, 214, 283, 320
Tru1I TTAA 3 cut(s) 212, 254, 300
Tru9I TTAA 3 cut(s) 212, 254, 300
TseI GCWGC 2 cut(s) 101, 113
TspDTI ATGAA 3 cut(s) 72, 82, 237
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.