Rh2DG009900

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000431
Physical Location & Seq
Reverse (-)
584261 .. 585785
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG009900.1

Sequence Viewer

Length: 501 bp
ATGAGAAAATACGTCTATTGCACTCCTGGCTCTGTTGATCTACTGAAGAACAAGTTGGGGTTTGATGAGGCTTTCAATTACAAGGAGGAGAACGATTTAGAAGCAGCTTTGAAAAGGTACTTTCCTGAAGGAATCGACGTCTACTTTGAGCATGTGGGTGGGAAATTGTTTGACGCAGTGCTGCTCAACATGAAAGAACACGGTCGCATTGCTGTGTGCGGAATGATTTCACAATACAACCTTCCCGAGCCTGAGCCACTCAAAAACCTGTTCCAGATTGCGTTGAAGCGGCTCAATATACATGGATTTACTCATCGCGATTACGATCACATAGTACCCAAGTACTATGAGTTTGTGCTGCCTTACATCCGGGAAGGTAAAATAGTGTATGTGGAAGACATAGTTGAAGGGCTTGAGAATGGTCCAGCAGCACTGGTTGGACTCTTTACTGGTCGCAACTTTGGGAAGCAAGTAGTTGCAGTTGCACCACCTCGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

166

Amino Acids

18.98

Weight (kDa)

6.21

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 13 - 110 4.7e-15 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 19 - 159 2.2e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 318
AciI CCGC 2 cut(s) 219, 289
AcuI CTGAAG 2 cut(s) 65, 147
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 3 cut(s) 119, 336, 344
AgsI TTSAA 4 cut(s) 76, 112, 286, 407
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 245
ApeKI GCWGC 4 cut(s) 104, 181, 358, 428
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
Asp700I GAANNNNTTC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 4 cut(s) 116, 168, 345, 440
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 371
BisI GCNGC 5 cut(s) 105, 182, 290, 359, 429
BlsI GCNGC 5 cut(s) 106, 183, 291, 360, 430
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 27, 371
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 27, 371
BpiI GAAGAC 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 438, 454
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 366
BseJI GATNNNNATC 1 cut(s) 324
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 2 cut(s) 438, 454
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 4 cut(s) 116, 168, 345, 440
Bsh1236I CGCG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 2 cut(s) 37, 325
Bsp68I TCGCGA 1 cut(s) 318
BspACI CCGC 2 cut(s) 219, 289
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 2 cut(s) 438, 454
BssMI GATC 2 cut(s) 37, 325
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 2 cut(s) 40, 328
BstMBI GATC 2 cut(s) 37, 325
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 25, 369
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 4 cut(s) 116, 168, 345, 440
BstV2I GAAGAC 1 cut(s) 402
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 431
BtuMI TCGCGA 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 118, 335, 343
CviAII CATG 3 cut(s) 152, 190, 302
CviJI RGCY 7 cut(s) 30, 71, 107, 250, 256, 292, 412
CviKI_1 RGCY 7 cut(s) 30, 71, 107, 250, 256, 292, 412
CviQI GTAC 3 cut(s) 118, 335, 343
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 39, 327
DpnII GATC 2 cut(s) 37, 325
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 2 cut(s) 65, 147
Eco88I CYCGRG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 25
FaeI CATG 3 cut(s) 155, 193, 305
FaiI YATR 8 cut(s) 153, 191, 299, 303, 332, 348, 390, 401
FatI CATG 3 cut(s) 151, 189, 301
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 5 cut(s) 105, 182, 290, 359, 429
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 5 cut(s) 105, 182, 290, 359, 429
GluI GCNGC 5 cut(s) 105, 182, 290, 359, 429
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 3 cut(s) 155, 193, 305
HinfI GANTC 2 cut(s) 132, 441
HpaII CCGG 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 125, 245, 274, 317
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 122, 251, 368, 401
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 2 cut(s) 12, 138
HpyCH4V TGCA 3 cut(s) 21, 479, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 2 cut(s) 12, 138
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 155, 193, 305
Kzo9I GATC 2 cut(s) 37, 325
Lsp1109I GCAGC 4 cut(s) 116, 168, 345, 440
MaeII ACGT 2 cut(s) 12, 138
MalI GATC 2 cut(s) 39, 327
MboI GATC 2 cut(s) 37, 325
MboII GAAGA 2 cut(s) 58, 407
MluCI AATT 2 cut(s) 76, 164
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 3 cut(s) 61, 79, 501
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 1 cut(s) 499
MslI CAYNNNNRTG 2 cut(s) 156, 212
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 27, 371
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 37, 325
NlaIII CATG 3 cut(s) 155, 193, 305
NruI TCGCGA 1 cut(s) 318
NspI RCATGY 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 5 cut(s) 106, 183, 291, 360, 430
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 1 cut(s) 422
RruI TCGCGA 1 cut(s) 318
RsaI GTAC 3 cut(s) 119, 336, 344
RsaNI GTAC 3 cut(s) 118, 335, 343
RseI CAYNNNNRTG 2 cut(s) 156, 212
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 5 cut(s) 105, 182, 290, 359, 429
Sau3AI GATC 2 cut(s) 37, 325
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 27, 371
SetI ASST 9 cut(s) 15, 109, 119, 141, 243, 270, 379, 493, 499
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 156, 212
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 76, 164
SsiI CCGC 2 cut(s) 219, 289
StyD4I CCNGG 2 cut(s) 25, 369
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 2 cut(s) 15, 141
TaqI TCGA 2 cut(s) 135, 493
TasI AATT 2 cut(s) 76, 164
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TscAI CASTG 2 cut(s) 183, 438
TseI GCWGC 4 cut(s) 104, 181, 358, 428
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 2 cut(s) 183, 438
VpaK11BI GGWCC 1 cut(s) 422
XceI RCATGY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 226
ZraI GACGTC 1 cut(s) 139
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.