AT5G16970

NADP-dependent alkenal double bond reductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5575973 .. 5578086
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16970.1

Sequence Viewer

Length: 1038 bp
ATGACGGCGACGAACAAGCAAGTCATATTGAAAGACTACGTGAGTGGTTTCCCTACGGAATCCGATTTCGATTTCACTACCACCACCGTCGAACTTAGGGTTCCGGAAGGTACTAACTCTGTTCTAGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGAATTCGCATGGGGAAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACACTCCCGGCCAGCCAATCCAAGGGTATGGAGTGTCTAGAATAATAGAATCTGGACATCCAGATTACAAGAAAGGAGATTTACTCTGGGGTATAGTTGCATGGGAGGAGTACAGTGTTATCACTCCAATGACTCACGCGCATTTCAAGATCCAACATACTGATGTTCCATTATCTTATTACACTGGACTTTTAGGTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGGAAGGAGAGACAGTTTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAACTTGCTAAGATGATGGGCTGTTATGTTGTTGGAAGCGCTGGAAGTAAAGAGAAGGTTGATCTTCTGAAGACCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAATCTGACCTTACTGCTGCCCTAAAAAGGTGTTTCCCTAATGGCATTGACATATACTTTGAGAATGTAGGAGGCAAAATGCTAGATGCAGTGCTTGTGAACATGAACATGCACGGGCGTATCGCTGTCTGTGGAATGATCTCACAGTACAATCTTGAGAACCAGGAAGGTGTACACAACCTATCCAACATAATCTACAAAAGAATCCGCATTCAAGGCTTTGTAGTGTCTGATTTCTACGACAAATACTCAAAGTTCTTGGAGTTTGTGCTTCCCCACATTAGAGAAGGGAAGATAACGTACGTGGAAGATGTAGCTGATGGGCTTGAGAAAGCTCCCGAAGCTCTTGTGGGACTCTTCCATGGTAAGAATGTTGGGAAACAAGTTGTTGTTGTTGCTCGTGAGTGA

Protein Analysis

345

Amino Acids

38.13

Weight (kDa)

5.81

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 6 - 114 4.7e-23 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 167 - 300 2e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 201 - 340 1.4e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 1 cut(s) 838
AclWI GGATC 3 cut(s) 146, 179, 358
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 5 cut(s) 112, 326, 779, 804, 932
AfeI AGCGCT 1 cut(s) 559
AfiI CCNNNNNNNGG 5 cut(s) 236, 435, 464, 600, 657
AgsI TTSAA 3 cut(s) 31, 361, 845
AjnI CCWGG 2 cut(s) 415, 792
AluBI AGCT 6 cut(s) 212, 488, 511, 947, 965, 974
AluI AGCT 6 cut(s) 212, 488, 511, 947, 965, 974
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 3 cut(s) 146, 179, 358
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 559
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 197, 488, 647
ApoI RAATTY 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AspLEI GCGC 2 cut(s) 355, 560
AsuC2I CCSGG 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 733, 766
BarI GAAGNNNNNNTAC 4 cut(s) 122, 154, 914, 946
BauI CACGAG 1 cut(s) 1029
BbsI GAAGAC 1 cut(s) 596
BbvI GCAGC 3 cut(s) 184, 475, 634
BccI CCATC 2 cut(s) 529, 944
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 417, 794
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 3 cut(s) 125, 252, 713
BfoI RGCGCY 1 cut(s) 561
BisI GCNGC 3 cut(s) 198, 489, 648
BlsI GCNGC 3 cut(s) 199, 490, 649
Bme1390I CCNGG 3 cut(s) 222, 417, 794
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 3 cut(s) 222, 417, 794
BmsI GCATC 3 cut(s) 500, 601, 706
BpiI GAAGAC 1 cut(s) 596
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpuEI CTTGAG 3 cut(s) 192, 806, 977
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 2 cut(s) 40, 934
BsaJI CCNNGG 2 cut(s) 235, 991
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 5 cut(s) 236, 435, 464, 600, 657
Bse1I ACTGG 1 cut(s) 403
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 2 cut(s) 417, 794
BseDI CCNNGG 2 cut(s) 235, 991
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 5 cut(s) 236, 435, 464, 600, 657
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 184, 475, 634
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 104, 222
BsiWI CGTACG 1 cut(s) 930
BslFI GGGAC 2 cut(s) 531, 996
BslI CCNNNNNNNGG 5 cut(s) 236, 435, 464, 600, 657
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 531, 996
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 802
Bsp143I GATC 5 cut(s) 151, 184, 363, 580, 768
Bsp19I CCATGG 1 cut(s) 991
BspACI CCGC 1 cut(s) 838
BspANI GGCC 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 3 cut(s) 146, 179, 358
BsrGI TGTACA 1 cut(s) 802
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 235, 991
BssMI GATC 5 cut(s) 151, 184, 363, 580, 768
BssSI CACGAG 1 cut(s) 1029
BssT1I CCWWGG 2 cut(s) 235, 991
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 2 cut(s) 417, 794
Bst4CI ACNGT 4 cut(s) 88, 329, 475, 777
Bst6I CTCTTC 1 cut(s) 992
BstAPI GCANNNNNTGC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 802
BstBAI YACGTR 2 cut(s) 40, 934
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 95, 528
BstDSI CCRYGG 1 cut(s) 991
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 2 cut(s) 355, 560
BstKTI GATC 5 cut(s) 154, 187, 366, 583, 771
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 5 cut(s) 151, 184, 363, 580, 768
BstMWI GCNNNNNNNGC 4 cut(s) 203, 497, 846, 971
BstNI CCWGG 2 cut(s) 417, 794
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 3 cut(s) 220, 415, 792
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 184, 475, 634
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 363
BsuRI GGCC 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 991
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 2 cut(s) 192, 726
BtsIMutI CAGTG 4 cut(s) 192, 334, 396, 726
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 2 cut(s) 355, 560
Csp6I GTAC 5 cut(s) 111, 325, 778, 803, 931
CviAII CATG 7 cut(s) 147, 160, 172, 315, 733, 739, 992
CviQI GTAC 5 cut(s) 111, 325, 778, 803, 931
DdeI CTNAG 2 cut(s) 95, 528
DpnI GATC 5 cut(s) 153, 186, 365, 582, 770
DpnII GATC 5 cut(s) 151, 184, 363, 580, 768
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 992
EarI CTCTTC 1 cut(s) 992
Eco130I CCWWGG 2 cut(s) 235, 991
Eco47III AGCGCT 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 415, 792
EcoT14I CCWWGG 2 cut(s) 235, 991
EcoT22I ATGCAT 1 cut(s) 616
ErhI CCWWGG 2 cut(s) 235, 991
FaeI CATG 7 cut(s) 150, 163, 175, 318, 736, 742, 995
FaqI GGGAC 2 cut(s) 531, 996
FatI CATG 7 cut(s) 146, 159, 171, 314, 732, 738, 991
Fnu4HI GCNGC 3 cut(s) 198, 489, 648
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 198, 489, 648
FspBI CTAG 3 cut(s) 125, 252, 713
GlaI GCGC 2 cut(s) 354, 559
GluI GCNGC 3 cut(s) 198, 489, 648
GsaI CCCAGC 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 104, 222
HhaI GCGC 2 cut(s) 355, 560
Hin1II CATG 7 cut(s) 150, 163, 175, 318, 736, 742, 995
Hin6I GCGC 2 cut(s) 353, 558
HinP1I GCGC 2 cut(s) 353, 558
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 7 cut(s) 59, 133, 263, 346, 632, 834, 984
HpaII CCGG 2 cut(s) 104, 222
Hpy166II GTNNAC 3 cut(s) 730, 803, 805
Hpy188I TCNGA 4 cut(s) 64, 588, 637, 862
Hpy188III TCNNGA 8 cut(s) 104, 252, 267, 275, 361, 785, 968, 1031
Hpy8I GTNNAC 3 cut(s) 730, 803, 805
Hpy99I CGWCG 2 cut(s) 13, 92
HpyAV CCTTC 6 cut(s) 101, 198, 458, 568, 791, 911
HpyCH4III ACNGT 4 cut(s) 88, 329, 475, 777
HpyCH4IV ACGT 3 cut(s) 39, 929, 933
HpyCH4V TGCA 5 cut(s) 314, 491, 614, 719, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 497, 846, 971
HpyF3I CTNAG 2 cut(s) 95, 528
HpySE526I ACGT 3 cut(s) 39, 929, 933
Hsp92II CATG 7 cut(s) 150, 163, 175, 318, 736, 742, 995
HspAI GCGC 2 cut(s) 353, 558
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 5 cut(s) 151, 184, 363, 580, 768
LmnI GCTCC 1 cut(s) 970
Lsp1109I GCAGC 3 cut(s) 184, 475, 634
LweI GCATC 3 cut(s) 500, 601, 706
MaeI CTAG 3 cut(s) 125, 252, 713
MaeII ACGT 3 cut(s) 39, 929, 933
MalI GATC 5 cut(s) 153, 186, 365, 582, 770
MboI GATC 5 cut(s) 151, 184, 363, 580, 768
MboII GAAGA 7 cut(s) 142, 575, 601, 641, 934, 950, 979
MflI RGATCY 1 cut(s) 363
MluCI AATT 1 cut(s) 165
MlyI GAGTC 2 cut(s) 340, 978
MmeI TCCRAC 3 cut(s) 391, 532, 840
MnlI CCTC 2 cut(s) 313, 695
Mph1103I ATGCAT 1 cut(s) 616
MroI TCCGGA 1 cut(s) 103
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 3 cut(s) 341, 375, 737
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 2 cut(s) 104, 222
MspR9I CCNGG 3 cut(s) 222, 417, 794
Mva1269I GAATGC 1 cut(s) 840
MvaI CCWGG 2 cut(s) 417, 794
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 4 cut(s) 203, 497, 846, 971
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 991
NdeII GATC 5 cut(s) 151, 184, 363, 580, 768
NlaIII CATG 7 cut(s) 150, 163, 175, 318, 736, 742, 995
NlaIV GGNNCC 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 1 cut(s) 742
PctI GAATGC 1 cut(s) 840
PfeI GAWTC 5 cut(s) 59, 133, 263, 632, 834
Pfl23II CGTACG 1 cut(s) 930
PkrI GCNGC 3 cut(s) 199, 490, 649
PleI GAGTC 2 cut(s) 340, 978
PpsI GAGTC 2 cut(s) 340, 978
Ppu21I YACGTR 2 cut(s) 40, 934
Psp6I CCWGG 2 cut(s) 415, 792
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 415, 792
PspLI CGTACG 1 cut(s) 930
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 5 cut(s) 112, 326, 779, 804, 932
RsaNI GTAC 5 cut(s) 111, 325, 778, 803, 931
RseI CAYNNNNRTG 3 cut(s) 341, 375, 737
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 3 cut(s) 198, 489, 648
Sau3AI GATC 5 cut(s) 151, 184, 363, 580, 768
SchI GAGTC 2 cut(s) 340, 978
ScrFI CCNGG 3 cut(s) 222, 417, 794
SfaNI GCATC 3 cut(s) 500, 601, 706
SmiMI CAYNNNNRTG 3 cut(s) 341, 375, 737
SmlI CTYRAG 3 cut(s) 207, 785, 956
SmoI CTYRAG 3 cut(s) 207, 785, 956
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 838
SspMI CTAG 3 cut(s) 125, 252, 713
StyD4I CCNGG 3 cut(s) 220, 415, 792
StyI CCWWGG 2 cut(s) 235, 991
TaaI ACNGT 4 cut(s) 88, 329, 475, 777
TaiI ACGT 3 cut(s) 42, 932, 936
TaqI TCGA 2 cut(s) 69, 90
TasI AATT 1 cut(s) 165
TatI WGTACW 3 cut(s) 324, 777, 802
TfiI GAWTC 5 cut(s) 59, 133, 263, 632, 834
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 4 cut(s) 199, 334, 403, 726
TseI GCWGC 3 cut(s) 197, 488, 647
TspDTI ATGAA 2 cut(s) 459, 749
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 4 cut(s) 199, 334, 403, 726
XapI RAATTY 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 251
XceI RCATGY 1 cut(s) 742
XspI CTAG 3 cut(s) 125, 252, 713
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.