Rroxscaffold_2G00126190

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000431
Physical Location & Seq
Forward (+)
61270888 .. 61276486
5599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126190.1

Sequence Viewer

Length: 1023 bp
ATGACCGAGGATGGCGCTGCTGTAGCTGGTCTTGCTATTGCTGCAGCATCATTGGTTGCTGTAAATGTCACAGAAAATGGAATTTACGATCCTATAGGTTCAATTGTAGTTGGCAACCTTCTTGGAATGGTGGCTATCTTTCTGATACAAAGGAATCGACATGCTTTAATTGGTAGGGCAATAGATGACTATGATGTAGAGAAGGTGATATTGAGGAACTATGTCACCACTTTTCCGAAAGATTCGGACTTGTTTGTAACCAGCACTACTGCTAGTGTCAAGTTCAAGCTTCCTGCTCACACTATCATTACCACGTCAAAGGAACCAGCCGTCATAGTGAAGAACCTCTACTTGTCTTGCGATCCCTACCAGCGGCTCTTTATGGAAGAAATCCCAGGAGTCGACGAATCTACGTATAGTCAGCGAGTCTACTATACACCCGGCTCGAAAGGAGAAAATGTGTTTGTTTCAGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGCCAAATTGCTAAACTAATGGGTTGTTATGTTGTTGGAAGTGCTGGTACCAAGCAAAAGATTGATCTATTGAAGAGCAAGTTTGGATTTGATGACGCTTTTAACTATAAGGAAGAGAGTGACTTGGATGTGGCTTTGAAAAGGTATTTTCCTGAAGGCATTGATATATACTTTGACAATGTTGGCGGCAAAATGCTGGATGCGGTCTTCCTCAACATGAGTGTCCATGGCCGAATTGCTGGTTGTGGAATGATTTCACAGTACAATCTTGATCAGCCAGAAGGGGTGACCAATTTGATGCACCTTGTGTACAAGCGTATACGCTTCCATGGATTTACCGTTCGTGATCACTATCATCTGCATCCCAAATTCTTAGACTTCATTCTGCCTTACATTCAACAAGGGAAGATCGCTTATATAGAAGACATCGTTGAAGGCCTTGAGAATGCTCCAGCAGCACTGTTTGGACTTTTTAAGGGTCACAACATTGGAAAACAAGTAGTTGCAGTTGATCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

340

Amino Acids

37.4

Weight (kDa)

5.81

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 162 - 294 4.4e-22 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 196 - 335 2.1e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccI GTMKAC 3 cut(s) 402, 429, 820
AciI CCGC 3 cut(s) 373, 687, 704
AclWI GGATC 2 cut(s) 83, 356
AcoI YGGCCR 2 cut(s) 502, 730
AcsI RAATTY 2 cut(s) 81, 869
AcuI CTGAAG 1 cut(s) 675
AdeI CACNNNGTG 1 cut(s) 808
AfaI GTAC 3 cut(s) 550, 764, 812
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 6 cut(s) 102, 286, 574, 640, 899, 935
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 1 cut(s) 394
AloI GAACNNNNNNTCC 2 cut(s) 825, 857
AluBI AGCT 4 cut(s) 26, 289, 479, 496
AluI AGCT 4 cut(s) 26, 289, 479, 496
AlwI GGATC 2 cut(s) 83, 356
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 3 cut(s) 502, 730, 937
ApeKI GCWGC 6 cut(s) 17, 41, 44, 473, 476, 956
ApoI RAATTY 2 cut(s) 81, 869
Asp700I GAANNNNTTC 1 cut(s) 754
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 3 cut(s) 217, 217, 799
BalI TGGCCA 1 cut(s) 504
BanI GGYRCC 1 cut(s) 548
BarI GAAGNNNNNNTAC 4 cut(s) 332, 364, 532, 564
BbsI GAAGAC 2 cut(s) 700, 930
BbvI GCAGC 6 cut(s) 4, 28, 56, 485, 488, 968
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 396
BclI TGATCA 3 cut(s) 772, 847, 1012
BcnI CCSGG 1 cut(s) 441
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 3 cut(s) 21, 42, 93
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 8 cut(s) 18, 42, 45, 374, 474, 477, 688, 957
BlsI GCNGC 8 cut(s) 19, 43, 46, 375, 475, 478, 689, 958
Bme1390I CCNGG 2 cut(s) 396, 441
BmgBI CACGTC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 324, 550
BmrFI CCNGG 2 cut(s) 396, 441
BmsI GCATC 4 cut(s) 56, 691, 789, 871
BpiI GAAGAC 2 cut(s) 700, 930
BpmI CTGGAG 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 4 cut(s) 6, 394, 727, 829
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 4 cut(s) 6, 394, 727, 829
BseGI GGATG 4 cut(s) 16, 634, 706, 862
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 1 cut(s) 372
BseXI GCAGC 6 cut(s) 4, 28, 56, 485, 488, 968
BshFI GGCC 3 cut(s) 504, 732, 939
BshNI GGYRCC 1 cut(s) 548
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 372
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 3 cut(s) 504, 732, 939
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
Bsp19I CCATGG 2 cut(s) 727, 829
BspACI CCGC 3 cut(s) 373, 687, 704
BspANI GGCC 3 cut(s) 504, 732, 939
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 2 cut(s) 324, 550
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 2 cut(s) 83, 356
BspQI GCTCTTC 1 cut(s) 569
BspT107I GGYRCC 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 810
BssECI CCNNGG 4 cut(s) 6, 394, 727, 829
BssMI GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
BssNAI GTATAC 1 cut(s) 821
BssT1I CCWWGG 2 cut(s) 727, 829
Bst1107I GTATAC 1 cut(s) 821
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 762, 841, 963
Bst6I CTCTTC 2 cut(s) 569, 609
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 874
BstDSI CCRYGG 2 cut(s) 727, 829
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 4 cut(s) 16, 634, 706, 862
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 7 cut(s) 91, 364, 568, 775, 850, 912, 1015
BstMBI GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 41, 482, 956
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 2 cut(s) 394, 439
BstSFI CTRYAG 3 cut(s) 21, 42, 93
BstSNI TACGTA 1 cut(s) 414
BstV1I GCAGC 6 cut(s) 4, 28, 56, 485, 488, 968
BstV2I GAAGAC 2 cut(s) 700, 930
BstZ17I GTATAC 1 cut(s) 821
BsuRI GGCC 3 cut(s) 504, 732, 939
BtgI CCRYGG 2 cut(s) 727, 829
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 4 cut(s) 16, 634, 706, 862
BtsIMutI CAGTG 1 cut(s) 959
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 1 cut(s) 17
CseI GACGC 1 cut(s) 605
Csp6I GTAC 3 cut(s) 549, 763, 811
CviAII CATG 5 cut(s) 161, 718, 728, 830, 1016
CviQI GTAC 3 cut(s) 549, 763, 811
DdeI CTNAG 1 cut(s) 874
DpnI GATC 7 cut(s) 90, 363, 567, 774, 849, 911, 1014
DpnII GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
DraIII CACNNNGTG 1 cut(s) 808
EaeI YGGCCR 2 cut(s) 502, 730
Eam1104I CTCTTC 2 cut(s) 569, 609
EarI CTCTTC 2 cut(s) 569, 609
Eco105I TACGTA 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 727, 829
Eco147I AGGCCT 1 cut(s) 939
Eco57I CTGAAG 1 cut(s) 675
Eco91I GGTNACC 1 cut(s) 787
EcoO65I GGTNACC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 727, 829
ErhI CCWWGG 2 cut(s) 727, 829
FaeI CATG 5 cut(s) 164, 721, 731, 833, 1019
FatI CATG 5 cut(s) 160, 717, 727, 829, 1015
FbaI TGATCA 3 cut(s) 772, 847, 1012
FblI GTMKAC 3 cut(s) 402, 429, 820
Fnu4HI GCNGC 8 cut(s) 18, 42, 45, 374, 474, 477, 688, 957
FokI GGATG 4 cut(s) 23, 641, 713, 849
Fsp4HI GCNGC 8 cut(s) 18, 42, 45, 374, 474, 477, 688, 957
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 16
GluI GCNGC 8 cut(s) 18, 42, 45, 374, 474, 477, 688, 957
GsuI CTGGAG 1 cut(s) 936
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 504, 732, 939
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 605
HhaI GCGC 1 cut(s) 17
Hin1II CATG 5 cut(s) 164, 721, 731, 833, 1019
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 5 cut(s) 154, 242, 399, 407, 426
HpaII CCGG 1 cut(s) 441
HphI GGTGA 3 cut(s) 217, 217, 799
Hpy166II GTNNAC 4 cut(s) 403, 430, 811, 821
Hpy188I TCNGA 3 cut(s) 144, 237, 247
Hpy188III TCNNGA 4 cut(s) 653, 770, 845, 1016
Hpy8I GTNNAC 4 cut(s) 403, 430, 811, 821
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 5 cut(s) 128, 196, 650, 776, 929
HpyCH4III ACNGT 3 cut(s) 762, 841, 963
HpyCH4IV ACGT 2 cut(s) 314, 413
HpyCH4V TGCA 4 cut(s) 44, 802, 862, 1007
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 41, 482, 956
HpyF3I CTNAG 1 cut(s) 874
HpySE526I ACGT 2 cut(s) 314, 413
Hsp92II CATG 5 cut(s) 164, 721, 731, 833, 1019
HspAI GCGC 1 cut(s) 15
KpnI GGTACC 1 cut(s) 552
Ksp22I TGATCA 3 cut(s) 772, 847, 1012
Kzo9I GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
LguI GCTCTTC 1 cut(s) 569
LmnI GCTCC 1 cut(s) 955
Lsp1109I GCAGC 6 cut(s) 4, 28, 56, 485, 488, 968
LweI GCATC 4 cut(s) 56, 691, 789, 871
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 314, 413
MaeIII GTNAC 6 cut(s) 67, 223, 256, 620, 787, 980
MalI GATC 7 cut(s) 90, 363, 567, 774, 849, 911, 1014
MboI GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
MboII GAAGA 7 cut(s) 352, 398, 586, 626, 700, 919, 935
MfeI CAATTG 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 7 cut(s) 81, 102, 168, 507, 735, 793, 869
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 2 cut(s) 408, 435
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 3 cut(s) 207, 356, 722
Mox20I TGGCCA 1 cut(s) 504
MroXI GAANNNNTTC 1 cut(s) 754
MscI TGGCCA 1 cut(s) 504
MseI TTAA 3 cut(s) 167, 603, 975
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 2 cut(s) 373, 479
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 396, 441
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 41, 482, 956
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 2 cut(s) 727, 829
NdeII GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
NlaIII CATG 5 cut(s) 164, 721, 731, 833, 1019
NlaIV GGNNCC 2 cut(s) 324, 550
NmuCI GTSAC 5 cut(s) 67, 223, 620, 787, 980
NspI RCATGY 1 cut(s) 164
PagI TCATGA 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 939
PciSI GCTCTTC 1 cut(s) 569
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 754
PfeI GAWTC 3 cut(s) 154, 242, 407
PkrI GCNGC 8 cut(s) 19, 43, 46, 375, 475, 478, 689, 958
PleI GAGTC 2 cut(s) 407, 434
PpsI GAGTC 2 cut(s) 407, 434
Ppu21I YACGTR 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 394
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 324, 550
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 479
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 3 cut(s) 550, 764, 812
RsaNI GTAC 3 cut(s) 549, 763, 811
SalI GTCGAC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 569
SaqAI TTAA 3 cut(s) 167, 603, 975
SatI GCNGC 8 cut(s) 18, 42, 45, 374, 474, 477, 688, 957
Sau3AI GATC 7 cut(s) 88, 361, 565, 772, 847, 909, 1012
SchI GAGTC 2 cut(s) 408, 435
ScrFI CCNGG 2 cut(s) 396, 441
SfaNI GCATC 4 cut(s) 56, 691, 789, 871
SfcI CTRYAG 3 cut(s) 21, 42, 93
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
SnaBI TACGTA 1 cut(s) 414
Sse9I AATT 7 cut(s) 81, 102, 168, 507, 735, 793, 869
SseBI AGGCCT 1 cut(s) 939
SsiI CCGC 3 cut(s) 373, 687, 704
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 939
StyD4I CCNGG 2 cut(s) 394, 439
StyI CCWWGG 2 cut(s) 727, 829
TaaI ACNGT 3 cut(s) 762, 841, 963
TaiI ACGT 2 cut(s) 317, 416
TaqI TCGA 3 cut(s) 157, 402, 446
TaqII GACCGA 1 cut(s) 20
TasI AATT 7 cut(s) 81, 102, 168, 507, 735, 793, 869
TatI WGTACW 2 cut(s) 762, 810
TauI GCSGC 2 cut(s) 376, 690
TfiI GAWTC 3 cut(s) 154, 242, 407
Tru1I TTAA 3 cut(s) 167, 603, 975
Tru9I TTAA 3 cut(s) 167, 603, 975
TscAI CASTG 1 cut(s) 966
TseFI GTSAC 5 cut(s) 67, 223, 620, 787, 980
TseI GCWGC 6 cut(s) 17, 41, 44, 473, 476, 956
Tsp45I GTSAC 5 cut(s) 67, 223, 620, 787, 980
TspDTI ATGAA 1 cut(s) 871
TspRI CASTG 1 cut(s) 966
XapI RAATTY 2 cut(s) 81, 869
XceI RCATGY 1 cut(s) 164
XmiI GTMKAC 3 cut(s) 402, 429, 820
XmnI GAANNNNTTC 1 cut(s) 754
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.