RchiOBHm_Chr2g0117841

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000431
Physical Location & Seq
Reverse (-)
30154351 .. 30156261
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49071

Sequence Viewer

Length: 969 bp
ATGACGTTAGTGAGAAACAAACAGGTGATATTGAGGAACTATGTCACCACTTTTCCGAAAGATTCGGACTTGTATGTGACCAGCACTACTGCTAGTGTCAAGTTCAAGCTTCCTGCTCACACTATCATTACCACTTCAAAGGAACCAGCCGTCATAGTGAAGAACCTCTACTTGTCTTGCGATCCCTACCAGCGGCTATTTATGGAAGAAATCCCAGGAGTCGACGAATCTACGTATAGTCAGCGAGTCTACTATACACCCGGCTCGCCAATATATGGGTATGGAGTGGCTGAAGTGTTGGACTCACACCACCCAGATTTTAAGGCAGGTGACTTGGTTTGGGGGACTACTAATTGGGAGCAATACAGCCTTATCACTACACCCAAAAGCCTCAACAAAATCCAGCACACTGATACTGATGTACCCCTTTCCTACTATGCTGGAATTCTTGGTGCAACTGGTTTGACCGCTTACGTTGGTTTCTATGAATTCTGTTCTCCGAAGAAAGGAGAAAATGTGTTTGTTTCAGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGCCAAATTGCTAAACTAATGGGTTGTTATGTTGTTGGAAGTGCTGGTACTAAGCAAAAGATTGATCTATTGAAGAGCAAGTTCGGATTTGATGACGCTTTTAACTATAAGGAAGAGAGTGACTTGGATGTGGCTTTGAAAAGGTATTTTCCTGAAGGCATTGATATATACTTTGACAATGTTGGCGGCAAAATGCTGGATGCGGTCTTTCTCAACATGAGTGTCCATGGCCGAATTGCTGGTTGTGGAATGATTTCACAGTACAATCTTGATCAGCCAGAAGGGGTGACCAATTTGATGCACCTTGTGTACAAGCGTATACGCTTCCATGGATTTACCGTTCGTGATCACTATCATCTGCATCCCAAATTCTTAGACTTCATTCTGCCTTACATTCAATCGCTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

322

Amino Acids

36.09

Weight (kDa)

6.55

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 32 - 133 4.3e-17 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 181 - 313 3.9e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 275
AccI GTMKAC 3 cut(s) 222, 249, 877
AciI CCGC 4 cut(s) 193, 468, 744, 761
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 559, 787
AcsI RAATTY 3 cut(s) 444, 488, 926
AcuI CTGAAG 2 cut(s) 312, 732
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 4 cut(s) 423, 607, 821, 869
AfiI CCNNNNNNNGG 3 cut(s) 192, 275, 506
AgsI TTSAA 5 cut(s) 106, 138, 631, 697, 956
AjnI CCWGG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
AluBI AGCT 3 cut(s) 109, 536, 553
AluI AGCT 3 cut(s) 109, 536, 553
AlwI GGATC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 536
AoxI GGCC 2 cut(s) 559, 787
ApeKI GCWGC 2 cut(s) 530, 533
ApoI RAATTY 3 cut(s) 444, 488, 926
Asp700I GAANNNNTTC 1 cut(s) 811
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 4 cut(s) 37, 37, 341, 856
BaeI ACNNNNGTAYC 4 cut(s) 405, 405, 438, 438
BalI TGGCCA 1 cut(s) 561
BarI GAAGNNNNNNTAC 4 cut(s) 152, 184, 589, 621
BbvI GCAGC 2 cut(s) 542, 545
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 2 cut(s) 829, 904
BcnI CCSGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 4 cut(s) 194, 531, 534, 745
BlsI GCNGC 4 cut(s) 195, 532, 535, 746
Bme1390I CCNGG 2 cut(s) 216, 261
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 216, 261
BmsI GCATC 3 cut(s) 748, 846, 928
BpuMI CCSGG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 909
BsaJI CCNNGG 3 cut(s) 214, 784, 886
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 275, 506
Bse1I ACTGG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 214, 784, 886
BseGI GGATG 3 cut(s) 691, 763, 919
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 3 cut(s) 192, 275, 506
BseNI ACTGG 1 cut(s) 463
BseXI GCAGC 2 cut(s) 542, 545
BshFI GGCC 2 cut(s) 561, 789
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 3 cut(s) 192, 275, 506
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 2 cut(s) 561, 789
Bsp1407I TGTACA 1 cut(s) 867
Bsp143I GATC 4 cut(s) 181, 622, 829, 904
Bsp19I CCATGG 2 cut(s) 784, 886
BspACI CCGC 4 cut(s) 193, 468, 744, 761
BspANI GGCC 2 cut(s) 561, 789
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 626
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 3 cut(s) 214, 784, 886
BssMI GATC 4 cut(s) 181, 622, 829, 904
BssNAI GTATAC 1 cut(s) 878
BssT1I CCWWGG 2 cut(s) 784, 886
Bst1107I GTATAC 1 cut(s) 878
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 819, 898
Bst6I CTCTTC 2 cut(s) 626, 666
BstAPI GCANNNNNTGC 1 cut(s) 539
BstAUI TGTACA 1 cut(s) 867
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 609, 931
BstDSI CCRYGG 2 cut(s) 784, 886
BstEII GGTNACC 1 cut(s) 844
BstF5I GGATG 3 cut(s) 691, 763, 919
BstKTI GATC 4 cut(s) 184, 625, 832, 907
BstMBI GATC 4 cut(s) 181, 622, 829, 904
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 844
BstSCI CCNGG 2 cut(s) 214, 259
BstSNI TACGTA 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 542, 545
BstZ17I GTATAC 1 cut(s) 878
BsuRI GGCC 2 cut(s) 561, 789
BtgI CCRYGG 2 cut(s) 784, 886
BtsCI GGATG 3 cut(s) 691, 763, 919
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 266
CaiI CAGNNNCTG 1 cut(s) 536
CseI GACGC 1 cut(s) 662
Csp6I GTAC 4 cut(s) 422, 606, 820, 868
CviAII CATG 3 cut(s) 775, 785, 887
CviQI GTAC 4 cut(s) 422, 606, 820, 868
DdeI CTNAG 2 cut(s) 609, 931
DpnI GATC 4 cut(s) 183, 624, 831, 906
DpnII GATC 4 cut(s) 181, 622, 829, 904
DraIII CACNNNGTG 1 cut(s) 865
EaeI YGGCCR 2 cut(s) 559, 787
Eam1104I CTCTTC 2 cut(s) 626, 666
EarI CTCTTC 2 cut(s) 626, 666
Eco105I TACGTA 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 784, 886
Eco57I CTGAAG 2 cut(s) 312, 732
Eco91I GGTNACC 1 cut(s) 844
EcoO65I GGTNACC 1 cut(s) 844
EcoRI GAATTC 2 cut(s) 444, 488
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 784, 886
ErhI CCWWGG 2 cut(s) 784, 886
FaeI CATG 3 cut(s) 778, 788, 890
FaqI GGGAC 1 cut(s) 358
FatI CATG 3 cut(s) 774, 784, 886
FbaI TGATCA 2 cut(s) 829, 904
FblI GTMKAC 3 cut(s) 222, 249, 877
Fnu4HI GCNGC 4 cut(s) 194, 531, 534, 745
FokI GGATG 3 cut(s) 698, 770, 906
Fsp4HI GCNGC 4 cut(s) 194, 531, 534, 745
FspBI CTAG 1 cut(s) 93
GluI GCNGC 4 cut(s) 194, 531, 534, 745
HaeIII GGCC 2 cut(s) 561, 789
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 662
Hin1II CATG 3 cut(s) 778, 788, 890
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 62, 219, 227, 246, 302
HpaII CCGG 1 cut(s) 261
HphI GGTGA 4 cut(s) 37, 37, 341, 856
Hpy166II GTNNAC 4 cut(s) 223, 250, 868, 878
Hpy188I TCNGA 4 cut(s) 57, 67, 501, 644
Hpy188III TCNNGA 3 cut(s) 710, 827, 902
Hpy8I GTNNAC 4 cut(s) 223, 250, 868, 878
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 707, 833
HpyCH4III ACNGT 2 cut(s) 819, 898
HpyCH4IV ACGT 3 cut(s) 5, 233, 474
HpyCH4V TGCA 3 cut(s) 455, 859, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 609, 931
HpySE526I ACGT 3 cut(s) 5, 233, 474
Hsp92II CATG 3 cut(s) 778, 788, 890
Ksp22I TGATCA 2 cut(s) 829, 904
Kzo9I GATC 4 cut(s) 181, 622, 829, 904
LguI GCTCTTC 1 cut(s) 626
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 542, 545
LweI GCATC 3 cut(s) 748, 846, 928
MaeI CTAG 1 cut(s) 93
MaeII ACGT 3 cut(s) 5, 233, 474
MaeIII GTNAC 5 cut(s) 43, 76, 329, 677, 844
MalI GATC 4 cut(s) 183, 624, 831, 906
MboI GATC 4 cut(s) 181, 622, 829, 904
MboII GAAGA 5 cut(s) 172, 218, 514, 643, 683
MlsI TGGCCA 1 cut(s) 561
MluCI AATT 7 cut(s) 352, 444, 488, 564, 792, 850, 926
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 3 cut(s) 228, 255, 296
MmeI TCCRAC 2 cut(s) 279, 574
MnlI CCTC 3 cut(s) 27, 176, 401
Mox20I TGGCCA 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 811
MscI TGGCCA 1 cut(s) 561
MseI TTAA 2 cut(s) 321, 660
Msp20I TGGCCA 1 cut(s) 561
MspA1I CMGCKG 2 cut(s) 193, 536
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 216, 261
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 539
NciI CCSGG 1 cut(s) 261
NcoI CCATGG 2 cut(s) 784, 886
NdeII GATC 4 cut(s) 181, 622, 829, 904
NlaIII CATG 3 cut(s) 778, 788, 890
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 5 cut(s) 43, 76, 329, 677, 844
PaqCI CACCTGC 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 811
PfeI GAWTC 2 cut(s) 62, 227
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 4 cut(s) 195, 532, 535, 746
PleI GAGTC 3 cut(s) 227, 254, 296
PpsI GAGTC 3 cut(s) 227, 254, 296
Ppu21I YACGTR 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 844
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 4 cut(s) 423, 607, 821, 869
RsaNI GTAC 4 cut(s) 422, 606, 820, 868
SalI GTCGAC 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 626
SaqAI TTAA 2 cut(s) 321, 660
SatI GCNGC 4 cut(s) 194, 531, 534, 745
Sau3AI GATC 4 cut(s) 181, 622, 829, 904
SchI GAGTC 3 cut(s) 228, 255, 296
ScrFI CCNGG 2 cut(s) 216, 261
SfaNI GCATC 3 cut(s) 748, 846, 928
SnaBI TACGTA 1 cut(s) 234
Sse9I AATT 7 cut(s) 352, 444, 488, 564, 792, 850, 926
SsiI CCGC 4 cut(s) 193, 468, 744, 761
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 214, 259
StyI CCWWGG 2 cut(s) 784, 886
TaaI ACNGT 2 cut(s) 819, 898
TaiI ACGT 3 cut(s) 8, 236, 477
TaqI TCGA 1 cut(s) 222
TasI AATT 7 cut(s) 352, 444, 488, 564, 792, 850, 926
TatI WGTACW 2 cut(s) 819, 867
TauI GCSGC 2 cut(s) 196, 747
TfiI GAWTC 2 cut(s) 62, 227
Tru1I TTAA 2 cut(s) 321, 660
Tru9I TTAA 2 cut(s) 321, 660
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 5 cut(s) 43, 76, 329, 677, 844
TseI GCWGC 2 cut(s) 530, 533
Tsp45I GTSAC 5 cut(s) 43, 76, 329, 677, 844
TspDTI ATGAA 2 cut(s) 501, 928
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 275
XapI RAATTY 3 cut(s) 444, 488, 926
XmiI GTMKAC 3 cut(s) 222, 249, 877
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.