Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000431

Physical Location & Seq

Genomic Coordinates Forward (+)

15121438 .. 15121836

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGGGCGAATCGCAGCATCTGGAATGATCTCACAGTTTCCAGTAAAAGGAAAGGCTCGCAGAGCAGAAGAGAACTAGAAGGTGCACATAAATTAGCCACCATTATTTACAAACGGATAGAGTTCAAGATTTTACAGCTGTCGAATGCTTTGACAAATACTCTCAAGTCTTTGTATTTTGTGCTTCCATATGTAAGAGAAGGAAAGATAACATATGTTGAGGATATAGCCCAAGGACTTGAGAATGGACCTTCTGCTTTGATCGGACTCTTCCATGGTAAGAATGTCGGGAACAACTTGTTGAAGTTGCTCGCGAGTGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0032440 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

9.79

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca	FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica	MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica	Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis	pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis	RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata	RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora	Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa	Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha	Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana	Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	127, 304
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	149, 260
BsaJI	CCNNGG	2 cut(s)	232, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	232, 274
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	28, 261
Bsp19I	CCATGG	1 cut(s)	274
Bsp68I	TCGCGA	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	232, 274
BssMI	GATC	2 cut(s)	28, 261
BssT1I	CCWWGG	2 cut(s)	232, 274
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	64, 275
BstC8I	GCNNGC	2 cut(s)	59, 312
BstDSI	CCRYGG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	31, 264
BstMBI	GATC	2 cut(s)	28, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	274
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	59, 312
CaiI	CAGNNNCTG	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	248
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	4 cut(s)	57, 98, 139, 230
CviKI_1	RGCY	4 cut(s)	57, 98, 139, 230
DpnI	GATC	2 cut(s)	30, 263
DpnII	GATC	2 cut(s)	28, 261
Eam1104I	CTCTTC	2 cut(s)	64, 275
EarI	CTCTTC	2 cut(s)	64, 275
Eco130I	CCWWGG	2 cut(s)	232, 274
Eco47I	GGWCC	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	232, 274
ErhI	CCWWGG	2 cut(s)	232, 274
FaeI	CATG	1 cut(s)	278
FaiI	YATR	7 cut(s)	90, 190, 192, 214, 216, 227, 276
FatI	CATG	1 cut(s)	274
FauNDI	CATATG	2 cut(s)	190, 214
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	2 cut(s)	10, 267
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	4 cut(s)	22, 127, 289, 313
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	74, 194, 261
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	28, 261
LpnPI	CCDG	2 cut(s)	7, 55
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	77
MalI	GATC	2 cut(s)	30, 263
MboI	GATC	2 cut(s)	28, 261
MboII	GAAGA	2 cut(s)	81, 262
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	1 cut(s)	214
MseI	TTAA	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	151
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	274
NdeI	CATATG	2 cut(s)	190, 214
NdeII	GATC	2 cut(s)	28, 261
NlaIII	CATG	1 cut(s)	278
NruI	TCGCGA	1 cut(s)	314
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	28, 261
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	85, 141, 253
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	164, 239
SmoI	CTYRAG	2 cut(s)	164, 239
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	232, 274
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TseI	GCWGC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	248
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.