Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000431

Physical Location & Seq

Genomic Coordinates Reverse (-)

5584708 .. 5587237

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACGGCGACGAACAAGCAGGTGGTATTGAAAAACTACGTGAGTGGTTTCCCTAAGGAATCCGATTTCGATTTCAAAACCACCACCGTCGAATTTAAACTTCCGGGAGGGTCTAACTCAGTTCTGGTGAAGAATCTCTACTTGTCATGCGATCCTTACATGAGGATTCGCATGGGGAAACCTGATCCTTCCACTGCTGCTCTTGCTCAAGCTTACGCTCCCGGCAAGCCAATCTTTGGGTATGGAGTGTCTAGAGTTATAGAATCTGGGCATCCAGATTACAAGAAAGGTGACTTACTCTGGGGGATAGTTGGATGGGAGGAGTATAGTGTTATTACTCCAATGACTCACATGCATTTCAAGATCCAACATACCGATATTCCATTATCTTACTACACTGGACTTCTCGGTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCCAAAGGAAGGAGAGACAGTTTATGTGTCAGCTGCATCTGGTGCTGTTGGTCAGCTTGTGGGACAATTTGCTAAGATGATGGGCTGTTATGTTGTTGGAAGCGCCGGAAGTACAGAGAAGGTTGATCTTCTGAAGACCAAGTTTGGGTTTGATGATGCATTTAACTACAAGGAAGAACCAGACCTTAGTGCTGCCCTCAAAAGGTGTTTCCCTACAGGCATTGACATATACTTTGAAAACGTAGGAGGCAAAATGCTAGACGCAGTGCTATTAAACATGAACCCACACGGACGTATCGCTGTGTGTGGAATGATCTCACAGTACAATCTTGAAAACCAAGAAGGTGTACACAACCTATCCAACATAATCTACAAAAGAATCCGCATTCAAGGCTTTGCAGTGTTTGATTTCTACGAGAAATACTCAAAGTTCTTGGATTTTGTGCTTCCGCACATTAAAGAAGGGAAGATCACGTACGTGGAAGATGTAGCTGATGGGCTTGAGAAAGGTCCTGAAGCTCTTGTGGGACTCTTCCATGGTAAGAACGTTGGAAAACAAGTTGTTGTTATTGCTCGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0032440 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

345

Amino Acids

38.12

Weight (kDa)

6.46

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	6 - 114	1e-23	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	167 - 300	5.4e-26	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	201 - 340	2.3e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26320 AT1G26320 AT3G03080 AT3G59845 AT3G59845 AT5G16960 AT5G16960 AT5G16970 AT5G16980 AT5G16980 AT5G16980 AT5G16990 AT5G17000 AT5G17000 AT5G37940 AT5G37960 AT5G37980 AT5G38000 AT5G38000 AT5G38000
fragaria_vesca	FvH4_1g00340 FvH4_1g18790 FvH4_1g23120 FvH4_1g23120
malus_domestica	MD00G1045700.v1.1 MD01G1046700.v1.1 MD02G1163900.v1.1 MD15G1145600.v1.1 MD16G1282000.v1.1
prunus_persica	Prupe.1G543700_v2.0.a1 Prupe.4G262000_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.4G262300_v2.0.a1 Prupe.6G211500_v2.0.a1 Prupe.7G269100_v2.0.a1
pyrus_communis	pycom02g00040 pycom02g13040 pycom11g16640 pycom12561g00320 pycom15g13080 pycom16g25160
rosa_chinensis	RchiOBHm_Chr2g0084641 RchiOBHm_Chr2g0084711 RchiOBHm_Chr2g0085361 RchiOBHm_Chr2g0085371 RchiOBHm_Chr2g0109651 RchiOBHm_Chr2g0117841 RchiOBHm_Chr6g0275751
rosa_laevigata	RLG00000013436 RLG00000015629 RLG00000015633 RLG00000015680 RLG00000015681 RLG00000017753 RLG00000018376
rosa_multiflora	Rmu_sc0000332.1_g000060 Rmu_sc0002352.1_g000008 Rmu_sc0002352.1_g000012 Rmu_sc0010860.1_g000005 Rmu_sc0012119.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126190 Rroxscaffold_2G00134060 Rroxscaffold_2G00155420 Rroxscaffold_2G00155430 Rroxscaffold_2G00155880 Rroxscaffold_2G00155890
rosa_rugosa	Rorug01G0455500 Rorug01G0455600 Rorug01G0459700 Rorug01G0459800 Rorug01G0459800 Rorug01G0459900 Rorug02G0161600 Rorug02G0214400
rosa_samantha	Rh2BG008800 Rh2BG282100 Rh2CG003900 Rh2CG004600 Rh2CG009500 Rh2CG009600 Rh2CG216100 Rh2CG216200 Rh2CG269100 Rh2CG269200 Rh2DG003700 Rh2DG004100 Rh2DG009900 Rh2DG219300 Rh2DG278400
rosa_wichuraiana	Rw2G000300 Rw2G000330 Rw2G000770 Rw2G000780 Rw2G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	236
AciI	CCGC	2 cut(s)	838, 905
AclI	AACGTT	1 cut(s)	1002
AclWI	GGATC	3 cut(s)	146, 179, 358
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	2 cut(s)	608, 990
AfaI	GTAC	4 cut(s)	568, 779, 804, 932
AfiI	CCNNNNNNNGG	5 cut(s)	236, 435, 464, 600, 657
AgsI	TTSAA	6 cut(s)	31, 76, 361, 692, 788, 845
AjnI	CCWGG	1 cut(s)	415
AleI	CACNNNNGTG	1 cut(s)	932
AluBI	AGCT	5 cut(s)	212, 488, 511, 947, 974
AluI	AGCT	5 cut(s)	212, 488, 511, 947, 974
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	146, 179, 358
ApeKI	GCWGC	3 cut(s)	197, 488, 647
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	965
AsuC2I	CCSGG	2 cut(s)	105, 222
AsuHPI	GGTGA	2 cut(s)	139, 302
AvaII	GGWCC	1 cut(s)	965
AxyI	CCTNAGG	1 cut(s)	54
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BarI	GAAGNNNNNNTAC	4 cut(s)	122, 154, 914, 946
BauI	CACGAG	1 cut(s)	1029
BbsI	GAAGAC	1 cut(s)	596
BbvI	GCAGC	3 cut(s)	184, 475, 634
BccI	CCATC	3 cut(s)	309, 529, 944
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	105, 222
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	252, 713
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	198, 489, 648
BlsI	GCNGC	3 cut(s)	199, 490, 649
Bme1390I	CCNGG	3 cut(s)	105, 222, 417
Bme18I	GGWCC	1 cut(s)	965
BmgT120I	GGNCC	1 cut(s)	965
BmrFI	CCNGG	3 cut(s)	105, 222, 417
BmsI	GCATC	3 cut(s)	280, 500, 601
BpiI	GAAGAC	1 cut(s)	596
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpuEI	CTTGAG	2 cut(s)	192, 977
BpuMI	CCSGG	2 cut(s)	105, 222
BsaAI	YACGTR	3 cut(s)	40, 930, 934
BsaJI	CCNNGG	1 cut(s)	991
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	5 cut(s)	236, 435, 464, 600, 657
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	991
BseGI	GGATG	2 cut(s)	271, 320
BseLI	CCNNNNNNNGG	5 cut(s)	236, 435, 464, 600, 657
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	184, 475, 634
BseYI	CCCAGC	1 cut(s)	434
BsiSI	CCGG	3 cut(s)	104, 222, 561
BsiWI	CGTACG	1 cut(s)	930
BslFI	GGGAC	2 cut(s)	531, 996
BslI	CCNNNNNNNGG	5 cut(s)	236, 435, 464, 600, 657
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	531, 996
BsmI	GAATGC	1 cut(s)	840
Bsp1407I	TGTACA	1 cut(s)	802
Bsp143I	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
Bsp19I	CCATGG	1 cut(s)	991
BspACI	CCGC	2 cut(s)	838, 905
BspCNI	CTCAG	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	3 cut(s)	146, 179, 358
BsrGI	TGTACA	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	991
BssMI	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
BssSI	CACGAG	1 cut(s)	1029
BssT1I	CCWWGG	1 cut(s)	991
Bst2BI	CACGAG	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	88, 475, 777
Bst6I	CTCTTC	1 cut(s)	992
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	802
BstBAI	YACGTR	3 cut(s)	40, 930, 934
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	4 cut(s)	54, 118, 528, 641
BstDSI	CCRYGG	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	271, 320
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	6 cut(s)	154, 187, 366, 583, 771, 927
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 497, 846
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	103, 220, 415
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	3 cut(s)	184, 475, 634
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	991
BtsCI	GGATG	2 cut(s)	271, 320
BtsI	GCAGTG	3 cut(s)	192, 726, 861
BtsIMutI	CAGTG	4 cut(s)	192, 396, 726, 861
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	965
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	4 cut(s)	567, 778, 803, 931
CviAII	CATG	6 cut(s)	147, 160, 172, 352, 733, 992
CviJI	RGCY	9 cut(s)	212, 229, 488, 511, 540, 849, 947, 955, 974
CviKI_1	RGCY	9 cut(s)	212, 229, 488, 511, 540, 849, 947, 955, 974
CviQI	GTAC	4 cut(s)	567, 778, 803, 931
DdeI	CTNAG	4 cut(s)	54, 118, 528, 641
DpnI	GATC	6 cut(s)	153, 186, 365, 582, 770, 926
DpnII	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
DraI	TTTAAA	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	992
EarI	CTCTTC	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	965
Eco57I	CTGAAG	2 cut(s)	608, 990
Eco81I	CCTNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	965
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	991
EcoT22I	ATGCAT	2 cut(s)	357, 616
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	6 cut(s)	150, 163, 175, 355, 736, 995
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	531, 996
FatI	CATG	6 cut(s)	146, 159, 171, 351, 732, 991
Fnu4HI	GCNGC	3 cut(s)	198, 489, 648
FokI	GGATG	2 cut(s)	258, 327
Fsp4HI	GCNGC	3 cut(s)	198, 489, 648
FspBI	CTAG	2 cut(s)	252, 713
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	3 cut(s)	198, 489, 648
GsaI	CCCAGC	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	561
HapII	CCGG	3 cut(s)	104, 222, 561
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	6 cut(s)	150, 163, 175, 355, 736, 995
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	7 cut(s)	59, 133, 166, 263, 346, 834, 984
HpaII	CCGG	3 cut(s)	104, 222, 561
HphI	GGTGA	2 cut(s)	139, 302
Hpy166II	GTNNAC	2 cut(s)	803, 805
Hpy188I	TCNGA	2 cut(s)	64, 588
Hpy188III	TCNNGA	6 cut(s)	252, 275, 361, 785, 968, 1031
Hpy8I	GTNNAC	2 cut(s)	803, 805
Hpy99I	CGWCG	2 cut(s)	13, 92
HpyAV	CCTTC	5 cut(s)	198, 458, 568, 791, 911
HpyCH4III	ACNGT	3 cut(s)	88, 475, 777
HpyCH4IV	ACGT	6 cut(s)	39, 696, 748, 929, 933, 1002
HpyCH4V	TGCA	4 cut(s)	355, 491, 614, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 497, 846
HpyF3I	CTNAG	4 cut(s)	54, 118, 528, 641
HpySE526I	ACGT	6 cut(s)	39, 696, 748, 929, 933, 1002
Hsp92II	CATG	6 cut(s)	150, 163, 175, 355, 736, 995
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	3 cut(s)	184, 475, 634
LweI	GCATC	3 cut(s)	280, 500, 601
MaeI	CTAG	2 cut(s)	252, 713
MaeII	ACGT	6 cut(s)	39, 696, 748, 929, 933, 1002
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	6 cut(s)	153, 186, 365, 582, 770, 926
MboI	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
MboII	GAAGA	7 cut(s)	142, 575, 601, 641, 934, 950, 979
MflI	RGATCY	1 cut(s)	363
MluCI	AATT	2 cut(s)	92, 521
MlyI	GAGTC	2 cut(s)	340, 978
MmeI	TCCRAC	5 cut(s)	292, 391, 532, 840, 985
MnlI	CCTC	5 cut(s)	101, 156, 313, 662, 695
Mph1103I	ATGCAT	2 cut(s)	357, 616
MseI	TTAA	4 cut(s)	96, 618, 728, 912
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	104, 222, 561
MspR9I	CCNGG	3 cut(s)	105, 222, 417
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	203, 497, 846
NciI	CCSGG	2 cut(s)	105, 222
NcoI	CCATGG	1 cut(s)	991
NdeII	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
NlaIII	CATG	6 cut(s)	150, 163, 175, 355, 736, 995
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	2 cut(s)	357, 616
NspI	RCATGY	1 cut(s)	355
OliI	CACNNNNGTG	1 cut(s)	932
PaqCI	CACCTGC	1 cut(s)	10
PctI	GAATGC	1 cut(s)	840
PfeI	GAWTC	5 cut(s)	59, 133, 166, 263, 834
Pfl23II	CGTACG	1 cut(s)	930
PflMI	CCANNNNNTGG	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	199, 490, 649
PleI	GAGTC	2 cut(s)	340, 978
PpsI	GAGTC	2 cut(s)	340, 978
Ppu21I	YACGTR	3 cut(s)	40, 930, 934
PpuMI	RGGWCCY	1 cut(s)	965
Psp1406I	AACGTT	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	965
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	415
PspLI	CGTACG	1 cut(s)	930
PspPI	GGNCC	1 cut(s)	965
PspPPI	RGGWCCY	1 cut(s)	965
PsuI	RGATCY	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	4 cut(s)	568, 779, 804, 932
RsaNI	GTAC	4 cut(s)	567, 778, 803, 931
RseI	CAYNNNNRTG	1 cut(s)	932
SaqAI	TTAA	4 cut(s)	96, 618, 728, 912
SatI	GCNGC	3 cut(s)	198, 489, 648
Sau3AI	GATC	6 cut(s)	151, 184, 363, 580, 768, 924
Sau96I	GGNCC	1 cut(s)	965
SchI	GAGTC	2 cut(s)	340, 978
ScrFI	CCNGG	3 cut(s)	105, 222, 417
SfaNI	GCATC	3 cut(s)	280, 500, 601
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	965
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	2 cut(s)	207, 956
SmoI	CTYRAG	2 cut(s)	207, 956
Sse9I	AATT	2 cut(s)	92, 521
SsiI	CCGC	2 cut(s)	838, 905
SspMI	CTAG	2 cut(s)	252, 713
StyD4I	CCNGG	3 cut(s)	103, 220, 415
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	3 cut(s)	88, 475, 777
TaiI	ACGT	6 cut(s)	42, 699, 751, 932, 936, 1005
TaqI	TCGA	2 cut(s)	69, 90
TasI	AATT	2 cut(s)	92, 521
TatI	WGTACW	3 cut(s)	566, 777, 802
TfiI	GAWTC	5 cut(s)	59, 133, 166, 263, 834
Tru1I	TTAA	4 cut(s)	96, 618, 728, 912
Tru9I	TTAA	4 cut(s)	96, 618, 728, 912
TscAI	CASTG	4 cut(s)	199, 403, 726, 861
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	3 cut(s)	197, 488, 647
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	459, 749
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	4 cut(s)	199, 403, 726, 861
Van91I	CCANNNNNTGG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	2 cut(s)	252, 713
Zsp2I	ATGCAT	2 cut(s)	357, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.